BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17530.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480640 jgi|Araly1|480640|fgenesh2_kg.3__3341__AT2G17530.1 2569 0.0
Ahg343373 jgi|Araly1|343373|fgenesh1_pg.C_scaffold_3003136 2265 0.0
Ahg491097 jgi|Araly1|491097|fgenesh2_kg.7__530__AT4G35500.1 1293 0.0
> Ahg480640 jgi|Araly1|480640|fgenesh2_kg.3__3341__AT2G17530.1
Length=1912
Score = 2569 bits (1391), Expect = 0.0
Identities = 1631/1741 (94%), Gaps = 39/1741 (2%)
Strand=Plus/Plus
Query 45 ctctctttctcGAGAAAACTAAAGAAAAGGGGGCTCTTTTATTCAAAGATCCAAACTTTG 104
|||||| | ||||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 28 CTCTCTCT-TCGAGAAAATTAAAGAAAAGGGAGCTCTTTCATTCAAAGATCCAAACTTTG 86
Query 105 ACAATTCAAAATCCAACATAGAACACGGATCAAGCTTTCAAATTCAGACAGAGATATGTC 164
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 87 ACAATTCAAAATCC-ACACAGAACACGGATCAAGCTTTGAAATTCAGACAGAGATATGTC 145
Query 165 GTGTTCATCCTCATCTGGATCAGAGGAAGACGATGAGGGTTTCGATGCTTACCGTAAAGG 224
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 146 GTGTTCATCCTCATCTGGATCAGATGAAGACGATGAGGGTTTCGATGCTTACCGTAAAGG 205
Query 225 TGGATATCACGCCGTTAGAATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TGGATATCACGCCGTTAGAATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAG 265
Query 285 AAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACTTCTAA 344
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 266 AAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACCTCTAA 325
Query 345 TTATGTTGCTTTGAAGATTCAGAAGAGCGCCTTACAATTTGCTCAAGCTGCACTTCATGA 404
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 326 TTATGTTGCTTTGAAGATTCAGAAGAGCGCTTTACAATTTGCTCAAGCTGCACTTCACGA 385
Query 405 AATCGAACTTCTTCAAGCTGCTGCTGATGGGGATCCTGAAAATACCAAGTGTGTTATTCG 464
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||
Sbjct 386 AATCGAACTTCTTCAAGCTGCTGCTGATGGGGATCCTGGAAATACCAAATGTGTTGTTCG 445
Query 465 TCTTATTGATGACTTCAAGCACGCAGGTCCCAACGGGCAGCATTTATGCATGGTGCTCGA 524
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 446 TCTTATTGATGACTTCAAGCACGCAGGTCCCAATGGGCAGCATTTATGCATGGTGCTTGA 505
Query 525 GTTTCTTGGCGATAGCTTGCTGCGTTTGATTAAATATAACCGTTATAAAGGGATGGAGTT 584
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 506 GTTTCTTGGCGATAGCTTGCTGCGTTTGATCAAATACAACCGTTATAAAGGGATGGAGTT 565
Query 585 AAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTGGTCTAGATTATTTGCACCGTGA 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTGGTCTAGATTATTTGCACCGTGA 625
Query 645 ACTCGGTATGATTCACTCCGACTTAAAACCCGAAAACATTCTTCTTTGTTCCACCATTGA 704
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 ACTTGGTATGATTCACTCCGACTTAAAACCCGAAAACATTCTTCTTTGTTCCACCATTGA 685
Query 705 CCCTGCCAAGGATCCTATCAGATCCGGACTAACACCGATACTAGAAAAGCCCGAGGGGAA 764
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 686 CCCTGCCAAGGATCCCATCAGATCCGGACTAACACCAATACTAGAAAAGCCTGAGGGTAA 745
Query 765 CCAAAACGGTACATCAACAATGAATCTGATTGAGAAGAAGTTGAAGAGGAGAGCaaaaaa 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 746 CCAAAACGGTACATCAACAATGAATCTGATTGAGAAGAAGTTGAAGAGGAGAGCGAAAAA 805
Query 825 aGCGGCTGCTAAAATATCAGGAAGAAGAGTTTCGATAGTAGGTTTAAGTGAAACACCGAA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GGCGGCTGCTAAAATATCAGGAAGAAGAGTTTCGATAGTAGGTTTAAGTGAAACACCGAC 865
Query 885 AAAGAACAAGAGAAACTTGGATGGGATTGATATGAGATGCAAAGTTGTCGACTTCGGGAA 944
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 866 AAAGAACAAGAGAAATTTGGATGGGATTGATATGAGATGCAAAGTTGTCGACTTTGGGAA 925
Query 945 CGGGTGTTGGGCTGATAACAAATTTGCAGAAGAAATACAAACAAGACAGTACAGAGCTCC 1004
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CGGGTGTTGGGCTGATAAGAAATTTGCAGAAGAAATACAAACAAGACAGTACAGAGCTCC 985
Query 1005 TGAAGTAATACTTCAGTCAGGTTACTCTTACTCTGTTGATATGTGGTCTTTCGCTTGTAC 1064
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 986 TGAAGTAATACTTCAGTCAGGTTACTCTTACTCTGTTGATATGTGGTCTTTCGCGTGTAC 1045
Query 1065 TGCTTTTGAGCTTGCTACAGGCGATATGCTTTTCGCTCCAAAAGAGGGAAATGGTTACGG 1124
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1046 TGCTTTCGAGCTTGCTACAGGTGATATGCTTTTCGCTCCAAAAGAGGGTAATGGTTACGG 1105
Query 1125 AGAAGACGAGGACCACCTTGCTCTTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGAT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AGAAGACGAGGACCACCTTGCTCTTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGAT 1165
Query 1185 TGCCATTGGAGGTGCGAGATCAAAGGATTACTTTGACAGACACGGCGACTTGAAGAGGAT 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TGCCATTGGAGGTGCGAGATCAAAGGATTACTTTGACAGACACGGCGACTTGAAGAGGAT 1225
Query 1245 CCGGAGATTAAAATACTGGCCACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 CCGGAGATTAAAATACTGGCCACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGA 1285
Query 1305 AGCAGAAGCACGAGAATTTGCGGATTTTCTCTGCCCGATAATGGATTTTGCACCTGAGAA 1364
||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1286 AGCAGAATCACGGGAATTTGCGGAATTTCTCTGCCCGATTATGGATTTTGCACCTGAGAA 1345
Query 1365 ACGACCAACTGCACAACAATGTCTGCAACATCCATGGTTGAATCTAAGGACACAGAACAA 1424
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1346 ACGACCAACTGCTCAACAATGTCTGCAACATCCATGGTTGAATCTCAGGACACAGAACAA 1405
Query 1425 TGAAGATGATATAGAAGGTCAGATGAGTAACATGCAGATCAAAGGTTCATGTTCTTGAtt 1484
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TGAAGATCAAATAGAAGGTCAGATGAGTAACATGCAGATCAAAGGTTCATGTTCTTGATT 1465
Query 1485 tttttttGCTTACAAATGATATAGAACTGctctctctctctTTTT-GG-TTAATTCTTTG 1542
||||| ||||||| |||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1466 TTTTT--GCTTACATATGATATAGAACTGCTCTCTCTCTCTTTTTTGGGTTCATTCTTTG 1523
Query 1543 GTTCGTTTCCATTTGAATATTGTTAAAAGAATAtttgttttgttcttttttctttctttt 1602
||||||| ||| | | ||| || ||||| || |||||||||| ||| ||
Sbjct 1524 GTTCGTT-CCA----A-T-TTG--AA-----TATTT-TT--GTTCTTTTTT-TTT-TTGA 1564
Query 1603 tttttGTCTTGGAAGATATGATCAATGACTAACAATGGGTTTCATATAAACATATAATGT 1662
|||| | | |||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 1565 ACTTTG----G-A-GATATGATCAATGACTAACAATCGTTTTCATATAAACATATAATAT 1618
Query 1663 AGTTCACTGCTC-TCTTTTAGTGGTAGTGACTA-GTGAGTGATATCAAACCAAATTTTAA 1720
|| || ||| | | | | | | ||| | | | |||||||||||||| || ||||||
Sbjct 1619 AGCACATTGCGAATGTATGATTTG-AGTT-CAAAGAGAGTGATATCAAACTAAGTTTTAA 1676
Query 1721 TTCCGATTATTCTTATTAGTTTGTCtttttttgttttttttttAACTCTAATTACAAGAA 1780
||||||| |||||||||| ||||||||||||| |||| || || | |||||||||||
Sbjct 1677 TTCCGATAATTCTTATTACTTTGTCTTTTTTT-TTTTCTTAC-AA-TA-AATTACAAGAA 1732
Query 1781 A 1781
|
Sbjct 1733 A 1733
Score = 195 bits (105), Expect = 1e-48
Identities = 121/129 (94%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 1878 GGCCAAGGCTTGATTTCTCAGTTGTGATTGTTACTCAACATATGGTTAAGCCAGAGAGAT 1937
||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 1784 GGCCAAGGCTTGATTACTCAGTTGTGATCGTTACTCTTCATATGGTTAAGCGAGAGAGAT 1843
Query 1938 GGAAGTATTACCAAATCAAGAACACAGAATGGGAGTTCCTAGATGTGGTCGAAGCCAAAT 1997
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1844 GGAAGTATTACCAAATCAAGAACACAGAATGGGAGTTCCTAAATGTGGTCGAAGCCAAAT 1903
Query 1998 TTGTGTTTC 2006
||| ||||
Sbjct 1904 CTGTCTTTC 1912
> Ahg343373 jgi|Araly1|343373|fgenesh1_pg.C_scaffold_3003136
Length=3171
Score = 2265 bits (1226), Expect = 0.0
Identities = 1296/1331 (97%), Gaps = 0/1331 (0%)
Strand=Plus/Plus
Query 152 ACAGAGATATGTCGTGTTCATCCTCATCTGGATCAGAGGAAGACGATGAGGGTTTCGATG 211
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1841 ACAGAGATATGTCGTGTTCATCCTCATCTGGATCAGATGAAGACGATGAGGGTTTCGATG 1900
Query 212 CTTACCGTAAAGGTGGATATCACGCCGTTAGAATCGGAGACCAGTTTGCCGGTGGCCGTT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 CTTACCGTAAAGGTGGATATCACGCCGTTAGAATCGGAGACCAGTTTGCCGGTGGCCGTT 1960
Query 272 ACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATA 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 ACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATA 2020
Query 332 CTCGCACTTCTAATTATGTTGCTTTGAAGATTCAGAAGAGCGCCTTACAATTTGCTCAAG 391
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2021 CTCGCACCTCTAATTATGTTGCTTTGAAGATTCAGAAGAGCGCTTTACAATTTGCTCAAG 2080
Query 392 CTGCACTTCATGAAATCGAACTTCTTCAAGCTGCTGCTGATGGGGATCCTGAAAATACCA 451
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2081 CTGCACTTCACGAAATCGAACTTCTTCAAGCTGCTGCTGATGGGGATCCTGGAAATACCA 2140
Query 452 AGTGTGTTATTCGTCTTATTGATGACTTCAAGCACGCAGGTCCCAACGGGCAGCATTTAT 511
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2141 AATGTGTTGTTCGTCTTATTGATGACTTCAAGCACGCAGGTCCCAATGGGCAGCATTTAT 2200
Query 512 GCATGGTGCTCGAGTTTCTTGGCGATAGCTTGCTGCGTTTGATTAAATATAACCGTTATA 571
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2201 GCATGGTGCTTGAGTTTCTTGGCGATAGCTTGCTGCGTTTGATCAAATACAACCGTTATA 2260
Query 572 AAGGGATGGAGTTAAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTGGTCTAGATT 631
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 AAGGGATGGAGTTGAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTGGTCTAGATT 2320
Query 632 ATTTGCACCGTGAACTCGGTATGATTCACTCCGACTTAAAACCCGAAAACATTCTTCTTT 691
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 ATTTGCACCGTGAACTTGGTATGATTCACTCCGACTTAAAACCCGAAAACATTCTTCTTT 2380
Query 692 GTTCCACCATTGACCCTGCCAAGGATCCTATCAGATCCGGACTAACACCGATACTAGAAA 751
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2381 GTTCCACCATTGACCCTGCCAAGGATCCCATCAGATCCGGACTAACACCAATACTAGAAA 2440
Query 752 AGCCCGAGGGGAACCAAAACGGTACATCAACAATGAATCTGATTGAGAAGAAGTTGAAGA 811
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 AGCCTGAGGGTAACCAAAACGGTACATCAACAATGAATCTGATTGAGAAGAAGTTGAAGA 2500
Query 812 GGAGAGCaaaaaaaGCGGCTGCTAAAATATCAGGAAGAAGAGTTTCGATAGTAGGTTTAA 871
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2501 GGAGAGCGAAAAAGGCGGCTGCTAAAATATCAGGAAGAAGAGTTTCGATAGTAGGTTTAA 2560
Query 872 GTGAAACACCGAAAAAGAACAAGAGAAACTTGGATGGGATTGATATGAGATGCAAAGTTG 931
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2561 GTGAAACACCGACAAAGAACAAGAGAAATTTGGATGGGATTGATATGAGATGCAAAGTTG 2620
Query 932 TCGACTTCGGGAACGGGTGTTGGGCTGATAACAAATTTGCAGAAGAAATACAAACAAGAC 991
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2621 TCGACTTTGGGAACGGGTGTTGGGCTGATAAGAAATTTGCAGAAGAAATACAAACAAGAC 2680
Query 992 AGTACAGAGCTCCTGAAGTAATACTTCAGTCAGGTTACTCTTACTCTGTTGATATGTGGT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2681 AGTACAGAGCTCCTGAAGTAATACTTCAGTCAGGTTACTCTTACTCTGTTGATATGTGGT 2740
Query 1052 CTTTCGCTTGTACTGCTTTTGAGCTTGCTACAGGCGATATGCTTTTCGCTCCAAAAGAGG 1111
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2741 CTTTCGCGTGTACTGCTTTCGAGCTTGCTACAGGTGATATGCTTTTCGCTCCAAAAGAGG 2800
Query 1112 GAAATGGTTACGGAGAAGACGAGGACCACCTTGCTCTTATGATGGAACTCTTAGGAAAAA 1171
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 GTAATGGTTACGGAGAAGACGAGGACCACCTTGCTCTTATGATGGAACTCTTAGGAAAAA 2860
Query 1172 TGCCTCGAAAGATTGCCATTGGAGGTGCGAGATCAAAGGATTACTTTGACAGACACGGCG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2861 TGCCTCGAAAGATTGCCATTGGAGGTGCGAGATCAAAGGATTACTTTGACAGACACGGCG 2920
Query 1232 ACTTGAAGAGGATCCGGAGATTAAAATACTGGCCACTCGACCGTTTACTGATTGATAAAT 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2921 ACTTGAAGAGGATCCGGAGATTAAAATACTGGCCACTCGACCGTTTACTGATTGATAAAT 2980
Query 1292 ACAAGCTTCCAGAAGCAGAAGCACGAGAATTTGCGGATTTTCTCTGCCCGATAATGGATT 1351
|||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||
Sbjct 2981 ACAAGCTTCCAGAAGCAGAATCACGGGAATTTGCGGAATTTCTCTGCCCGATTATGGATT 3040
Query 1352 TTGCACCTGAGAAACGACCAACTGCACAACAATGTCTGCAACATCCATGGTTGAATCTAA 1411
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 3041 TTGCACCTGAGAAACGACCAACTGCTCAACAATGTCTGCAACATCCATGGTTGAATCTCA 3100
Query 1412 GGACACAGAACAATGAAGATGATATAGAAGGTCAGATGAGTAACATGCAGATCAAAGGTT 1471
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 3101 GGACACAGAACAATGAAGATCAAATAGAAGGTCAGATGAGTAACATGCAGATCAAAGGTT 3160
Query 1472 CATGTTCTTGA 1482
|||||||||||
Sbjct 3161 CATGTTCTTGA 3171
> Ahg491097 jgi|Araly1|491097|fgenesh2_kg.7__530__AT4G35500.1
Length=1627
Score = 1293 bits (700), Expect = 0.0
Identities = 1140/1348 (85%), Gaps = 47/1348 (3%)
Strand=Plus/Plus
Query 150 AGACAGAGATATGTCGTGTTCATCCTCATCTGGATCAG-AGGAAGACGATGAGGGTTTCG 208
||| |||||||||||||||||||| || || ||||||| ||| ||| || || |||||||
Sbjct 130 AGATAGAGATATGTCGTGTTCATCTTCTTCCGGATCAGAAGG-AGAAGAAGAAGGTTTCG 188
Query 209 ATGCTTACCGTAAAGGTGGATATCACGCCGTTAGAATCGGAGA-CCAGTTTGCCGGTGGC 267
||||||||||||||||||| ||||||||||| || ||||| || || ||| |||||||
Sbjct 189 ATGCTTACCGTAAAGGTGGTTATCACGCCGTCAGGATCGGCGATCC-TTTTTCCGGTGGT 247
Query 268 CGTTACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTAT 327
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 248 CGTTACATCGCTCAGAGAAAGCTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCCTAC 307
Query 328 GATACTCGCACTTCTAATTATGTTGCTTTGAAGATTCAGAAGAGCGC-CTTACAATTTGC 386
||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 308 GATACTCGCACCTCTAATTATGTTGCTTTGAAGATTCAGAAGAGCGCAC-AACAGTTTGC 366
Query 387 TCAAGCTGCACTTCATGAAATCGAACTT-C-TTCAAGCTGCTGCTGATGGGGATCCT-GA 443
||||||||||||||| ||||||| | || | ||| ||||||||||||||| ||| || |
Sbjct 367 TCAAGCTGCACTTCACGAAATCG-AGTTCCTTTC-AGCTGCTGCTGATGGAGAT-CTCGC 423
Query 444 AAATACCAAGTGTGTTATTCGTCTTATTGATGACTTCAAGCACGCAGGTCCCAACGGGCA 503
||||| || |||||| ||||||||||||| | |||||||| | ||||| || |||||
Sbjct 424 CAATACGAAATGTGTTGTTCGTCTTATTGACCATTTCAAGCATACTGGTCCAAATGGGCA 483
Query 504 GCATTTATGCATGGTGCTCGAGTTTCTTGGCGATAGCTTGCTGCGTTTGATTAAATATAA 563
||||||||| |||||||| ||||||||||| ||||||||||| ||||| || | ||| ||
Sbjct 484 GCATTTATGTATGGTGCTTGAGTTTCTTGGTGATAGCTTGCTCCGTTTAATCAGATACAA 543
Query 564 CCGTTATAAAGGGATGGAGTTAAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTGG 623
|| ||| ||||| || | ||| |||||| |||||||| |||| ||||||| |||||||
Sbjct 544 CCATTACAAAGGTCTGAAAATAAATAAAGTCCGGGAGATTTGCAGATGTATATTGACTGG 603
Query 624 TCTAGATTATTTGCACCGTGAACTCGGTATGATTCACTCCGACTTAAAACCCGAAAACAT 683
| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 604 TTTAGATTATTTGCACCGTGAGCTCGGTATGATTCACTCCGACTTAAAACCTGAAAACAT 663
Query 684 TCTTCTTTGTTCCACCATTGACCCTGCCAAGGATCCTATCAGATCCGGACTAACACCGA- 742
|||||||||||||||||||||||||||||| ||||| | ||||| |||||||| || |
Sbjct 664 TCTTCTTTGTTCCACCATTGACCCTGCCAAAGATCCCGTTAGATCTGGACTAACCCC-AC 722
Query 743 TACTAGAAAAGCCCGAGGGGAAC-CAAAACGGTAC---ATCAACAATGAATCTGATTGAG 798
|| |||||||||| ||||| ||| |||| |||| ||| || |||||||||||||||
Sbjct 723 TATTAGAAAAGCCAGAGGGAAACGCAAA-CGGTGGTGGATCCACTATGAATCTGATTGAG 781
Query 799 AAGAAGTTGAAGAGGAGAGCaaaaaaaGCGGCTGCTAAAATATCAGGAAGAAGAGTTTCG 858
|||||| | ||||| |||||||||| ||||| |||||||||||||| ||||||||| ||
Sbjct 782 AAGAAGCTAAAGAGAAGAGCAAAAAGAGCGGTTGCTAAAATATCAGAAAGAAGAGTCTCA 841
Query 859 ATAGTAGGTT-TA-AG-TGAA-A--CACCGAAA-AAGA-ACAAGAGAAA-CTTGGATGGG 909
|| || ||| || || |||| | || | | |||| | || |||| |||| |||||
Sbjct 842 ATGGTGGGTGCTACAGGTGAAGAAGCATC-ATCGAAGACAGAA-AGAAGTCTTG-ATGGG 898
Query 910 ATTGATATGAGATGCAAAGTTGTCGACTTCGGGAACGGGTGTTGGGCTGATAA-CAAATT 968
|||||||||||||||||||| || ||||| || |||| |||||||||||||| || ||
Sbjct 899 ATTGATATGAGATGCAAAGTGGTTGACTTTGGTAACGCTTGTTGGGCTGATAAACAG-TT 957
Query 969 TGCAGAAGAAATACAAACAAGACAGTACAGAGCTCCTGAAGTAATACTTCAGTCAGGTTA 1028
||| ||||| |||||||| |||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 958 TGCGGAAGAGATACAAACGAGACAGTATAGAGCTCCTGAAGTAATACTTAAGTCAGGATA 1017
Query 1029 CTCTTACTCTGTTGATATGTGGTCTTTCGCTTGTACTGCTTTTGAGCTTG-CTACAGGCG 1087
||||| |||||||||| |||||||||| | |||||| ||||| ||||||| | ||||| |
Sbjct 1018 CTCTTTCTCTGTTGATGTGTGGTCTTTTGGTTGTACGGCTTTCGAGCTTGTC-ACAGGAG 1076
Query 1088 ATATGCT-TTTCGCTCCAAAAGAGGGAAATGGTTACGGAGAAGACGAGGACCACCTTGCT 1146
||||||| ||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1077 ATATGCTATTT-GCTCCTAAAGATGGAAATGGTTATGGAGAAGACGAGGATCACCTTGCT 1135
Query 1147 CTTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGATTGCCATTGGAGGTGCGAGATC- 1205
||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||| |||
Sbjct 1136 CTTATGATGGAACTCCTAGGAAAGATGCCTCGAAAGATTGCGATTGGAGGGGCGAAATCC 1195
Query 1206 AAAGGATTACTTTGACAGACACGGCGACTTGAAGAGGATCCGGAGATTAAAATACTGGCC 1265
|||| | ||||||||||||||||| || || ||||| |||||| | || || || |||||
Sbjct 1196 AAAG-ACTACTTTGACAGACACGGGGATTTAAAGAGAATCCGGCGGTTGAAGTATTGGCC 1254
Query 1266 ACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGAAGCAGAAGCACGAGAATTT-G 1324
||| || || || |||||||||||||| |||||||| |||||||||||| || |||| |
Sbjct 1255 ACTTGATCGCTTGCTGATTGATAAATATAAGCTTCCGGAAGCAGAAGCAA-AGGATTTTG 1313
Query 1325 CGGATTTTCT--CTGCCCGATAATGGATTTTGCACCTGAGAAACGACCAACTGCACAACA 1382
| || ||||| || || ||| | || ||||| || ||||||||||||||||| |||||
Sbjct 1314 CCGAGTTTCTGACT-CC-GATTCTTGAGTTTGCGCCAGAGAAACGACCAACTGCTCAACA 1371
Query 1383 ATGTCT-GCAACATCCATGGTTGAATCTAAGGACACAGAACAATGAAGATGATATAGAAG 1441
|| || | ||||||||||| ||||| ||| |||||| |||||| |||| || |||| |
Sbjct 1372 GTG-CTTGGAACATCCATGGATGAATGTAACAACACAGGACAATGCAGATAATGTAGATG 1430
Query 1442 GTCAGATGAGTAACATGCAGATCAAAGG 1469
|| |||| ||| |||||||||||||
Sbjct 1431 CCCAAATGAACAACTTGCAGATCAAAGG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5