BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17540.2
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480644 jgi|Araly1|480644|fgenesh2_kg.3__3345__AT2G17540.1 1419 0.0
> Ahg480644 jgi|Araly1|480644|fgenesh2_kg.3__3345__AT2G17540.1
Length=1238
Score = 1419 bits (768), Expect = 0.0
Identities = 1128/1285 (88%), Gaps = 91/1285 (7%)
Strand=Plus/Plus
Query 1 AACAAAtctcctctcttctctatcttcttccccatttctctgaaaaccctaatttctcca 60
||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||
Sbjct 13 AACAAATCTCCTCTC-TATCTATCTT-TTCCCCATTTCTC--AAAACCCTAATTTCTCCA 68
Query 61 tctctcaatctctctgtgtttgtatctctcatctctGTTTGAGAGATGATAAGGTAACTT 120
|||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 69 TCTCTC-ATCTCTGTGTGTTTGTATCTCTCATCTCTGTTTGAGAGATCATAAGGTAACTT 127
Query 121 CAAAGCATCCTCGTGAATTCATCTTGTAATTTCAGATTCTATAATGTGATCCTGATTTAG 180
||||||| ||||||||||||||||||||||||||| || | | | |||| |
Sbjct 128 CAAAGCAGCCTCGTGAATTCATCTTGTAATTTCAG----------GT-A-CTTCATTT-G 174
Query 181 GATTTTAATTCGAGATAAATGGCGACAAATGCGTGCCTTGAGTCCGATTCGCTTCTACCT 240
| || | ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 175 G-----AA--C-----AAATGGCGACAAATGCGAGCCTTGAATCCGATTCGCTTCTACCT 222
Query 241 CCACGGAAGCGTTTACTCGCCGGATTCAAGAACCAGAACTCGAGAATCAGCAATGAATCT 300
|||||||||||||||||||||||||||||||| |||||||||| || | ||||||||||
Sbjct 223 CCACGGAAGCGTTTACTCGCCGGATTCAAGAAACAGAACTCGAAAAGCGGCAATGAATCG 282
Query 301 CCGAGTCCTCCTTTCGCTTCTTCGTCCTCGTCTACTACAACTTCAAATGGTTCCTCTGCT 360
||||| ||||||||||||||||| | || |||| |||||||||||||||||||||||||
Sbjct 283 CCGAGCCCTCCTTTCGCTTCTTC-T--TCTTCTATTACAACTTCAAATGGTTCCTCTGCT 339
Query 361 TCAGCAGTTGTGCACACTCA--T----CATC--TCGACCAT--CTACTCAATGACCAGAC 410
||| ||| |||||| ||||| | |||| | || | | | ||| |||||||||||
Sbjct 340 TCAACAGATGTGCAGACTCATCTAGGCCATCTATTGA-CTTCCCAACTTAATGACCAGAC 398
Query 411 TCGGTCCCCGGAAGAGCTTGCTCAGGCGTCGAAA-GCAACCGCTGCTTTAGCGGTTAAGG 469
|||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct 399 TCGGTCTCCGGAAGAGCTAGCTCAGGCGTC-AAAGGCAACCGCTGCTTTAGCGGTTAAGG 457
Query 470 TTGCAAAGGCGGCGAGAGCTACTGCTAATGAGAAGGCCATCATTGCTTCTAAAGCAGTGG 529
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 458 TTGCAAAGGCGGCGAGAGCTACTGCTAATGAGAAGGCCATCATTGCTTCAAAAGCAGTGG 517
Query 530 CTGCAGCCAAGAA-TGCGTTGGAATTGTTTGCTTCTTTTCCCGCAGCTGAGACGGTTTCT 588
| ||||| || || ||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 518 CGGCAGCGAA-AAGTGCGTTGGAATTGTTCGCTTCTTTTCCCGT---TGAGGCGGTTTCT 573
Query 589 TGTAA--AGAGC-CTAGGTTGATTCGAGCTATAAACAATTCTCCTAGAGTCTTGACGGAT 645
||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 574 TGTAAGGAGAGGTCTAGGTTGAATCGAGCTATAAACAATTCCCCTAGAGTCTTGACGGAT 633
Query 646 TGTTCTGGTCACAGAAACAAGAAGCAAAAGACTC-TGACTAGTACTATGAACGATGGGAA 704
|||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 634 TGTTCTGGTCACAGAAACAAGAAGCAAAAGAC-CGTAACTAGTACTATGTACGATGGGAA 692
Query 705 TGATGTTGCTGGTGTTGTGGATTCAGATGACGGAACCAGAGTAAACGGGAAGCTGCTCTT 764
|||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 693 TGATGTTGCTGGTGTTGTAGATTCAGACAACAGAACCAGAGTAAACGGGAAGCTGCTCTT 752
Query 765 ATGCGATAACACGCTAAAGGAGAAAACAGAGGAAGAGAGTAGCTCATTAGGGAAAAGAAG 824
|||||||||| | || ||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 753 ATGCGATAACGCTCTGAAGGAGAAAACAGGGGGAGAGAGTAGCTCATTGGGGAAAAGAAG 812
Query 825 AGGAAGAGT---G--AA-GC--TC-CCTTTGAGCATGTGTGCCTAC-AAGGATCAAGAAA 874
||||||||| | || | | ||||||||||||||||||| | || ||||||||||
Sbjct 813 AGGAAGAGTAAAGTTAAAGAAGTTACCTTTGAGCATGTGTGCCT-CTAAAGATCAAGAAA 871
Query 875 ACGGTATCACATTAGAGGAAAACAATCTAAGTGTAAGTAAGTCGGAAGGTTATAATGGTG 934
||||||||||||||| |||||||||| |||| ||||||||| ||||||||| ||||||||
Sbjct 872 ACGGTATCACATTAGCGGAAAACAATGTAAGCGTAAGTAAGCCGGAAGGTTCTAATGGTG 931
Query 935 GTGTGGCTCAGGTTATAGAACGACCATCATGGAAGTGTCAGGACTTAAAGTCACCGGAAT 994
|||||| |||||| |||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 932 GTGTGGGTCAGGTCATAGAAGGACCATCATGGAAGTGTCAGGACCTCAAGTCACCGGAAT 991
Query 995 GTGTGAAGCAGAACAAAGTTGTACGTTCATAGTCTTCTTATATGTATTTACACCTAAAAG 1054
||||||||||||||||||||||||||||||||| | | | ||||||
Sbjct 992 GTGTGAAGCAGAACAAAGTTGTACGTTCATAGT------A----------C-C-TAAAAG 1033
Query 1055 AGGTAAGAAGGTGCAGATTCAACAGCATTGTCATTTTCAGTACAATCTTAAtgttgttta 1114
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1034 AGGTAAGAAGGTGCAGATTCAACAGCATTGCCATTTTCAGTAGAATCTTAATGTTGTTTA 1093
Query 1115 tttttatcttgttttgcttttttgggtaatgtgtttgattttatgtt----gtatatttt 1170
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1094 TTTTTATCTTGTTTTGCTTTTTTGGGTAATGTGTTTGAATTTATGTTACTTGTATATTTT 1153
Query 1171 gGGAATAATATCTAGATACATAGATTTTGTATAT--GTATGTTGGTTGTTTAATCAGTGT 1228
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 1154 GGGAATAATATCTAGATACATAGATTTTATATATATGTATGTTGGTTGTTGAATCATTGT 1213
Query 1229 AAGTGTTGTTATTAAAGTGATGACT 1253
|||||||||| ||||||||||||||
Sbjct 1214 AAGTGTTGTTGTTAAAGTGATGACT 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5