BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17550.1
Length=3172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343376 jgi|Araly1|343376|fgenesh1_pg.C_scaffold_3003139 3568 0.0
> Ahg343376 jgi|Araly1|343376|fgenesh1_pg.C_scaffold_3003139
Length=2346
Score = 3568 bits (1932), Expect = 0.0
Identities = 2227/2364 (94%), Gaps = 42/2364 (2%)
Strand=Plus/Plus
Query 621 ATGGGAGGATTATTGCATCTCTTCGATTTCCACAACAACAGTTTCTCCCGTAAAGTTTTC 680
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGAGGATTATTGCATCTCTTCGATTTCCACAACAACAGTTTCTCCCGGAAAGTTTTC 60
Query 681 TCTCATCACAAAAACCGCGACGAAGATCTGGAAGCTCCAAGAAATAGTTTCGAGCTTCAA 740
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCTCATCACAAAAGCCGCGACGAAGATCTGGAAGCTCCAAGAAATAGTTTTGAGCTTCAA 120
Query 741 GTCGACAACTTTCATACATACCATAACGGGAAAGATAAACCGAGTAATGGATTTGAGGAA 800
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GTCGATAACTTTCATACATACCATAACGAGAAAGATAAACCGAGTAATGGATTTGAGGAA 180
Query 801 GAGGAATGGTACGAGAGAAGTTGTTATCCAATAGAGGAATCAATGAAGAAGAAGATAATC 860
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 181 GAGGAATGGTACGAGAGAAGTTGTTACCCAATTGAGGAGTCAATGAAGAAGAAGATCATC 240
Query 861 GAGGAGCTTTCGAAACGTTCCAACGATAAGCAGAACACGCCGAGTCTTGTAGCTAAGTTA 920
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GAGGAGCTTTCGAAACGGTCCAACGATAAACAGAACACGCCGAGTCTTGTAGCTAAGTTG 300
Query 921 ATGGGAATGGATGCACTTCCTTTAGAGTCTGTTAAGTCATCGTCGGCTTGGATCTATCCT 980
||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||
Sbjct 301 ATGGGAATGGATGCACTTCCTTTGGAGTCTGCTAAGTCA---TCGGCTTGGATCTATCCT 357
Query 981 CGTCAGAGTAAAGTGAATAGATTTGATGATGAGAAAGGAGGAAGAAG---AAGTAGAAAA 1037
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 358 CGTCAGAGTAAAGTGAATCGATTTGATGATGAGAAAGGAGGAAGAAGAAAAAGTAGAAAA 417
Query 1038 GGGAGGTTATCTTCAGCAGTGACCGCATTGGATGTAATGGAGACACCAATGCGTAGAGAA 1097
|| |||||||||||| | |||| |||||||||||||||||||||||||| |||||||||
Sbjct 418 GGAAGGTTATCTTCATCGGTGATTGCATTGGATGTAATGGAGACACCAATCCGTAGAGAA 477
Query 1098 CATCCTCAAGAAGAGGAGCTACAAAGATTCAGAAGAGAGTTTGAAGCTTGGCAAGCTGAT 1157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 CATCCTCAAGAAGAGGAGCTACAAAGATTTAGAAGAGAGTTTGAAGCTTGGCAAGCTGAT 537
Query 1158 AAAAGGTTTAAAGATTGTTCAAGAATCGTTGATTCGGGCTGCGTGGTGGCTCGGGATGAG 1217
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAAAGGTTTCAAGATTGTTCAAGAATCGTTGATTCGGGCTGCGTGGTGGCTCGGGATGAG 597
Query 1218 AATAAAGAGAGGCTTTTCACGAGAACTAGGAGCTTTGGTAGAGATTTTACCTTGAAATCT 1277
||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 598 ---AAAGAGAGGCTTTTCACAAGAACTAGGAGCTTTGGTAGGGATTTTATCTTGAAATCT 654
Query 1278 GATAGAACTGCTCCAACTAGGATTGTTGTACTGAGACCTGGTCTTCAGAGAGCTTATGAT 1337
||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 655 GATAGGACTGCTCCAACTAGGATTGTGGTTCTGAGACCTGGTCTTCAGAGAGCGTATGAT 714
Query 1338 TACGAAGATTCGTTGACTACTTCTTCAGGGACGACAATGGAAGGAAGCAGAGGAAGTAGT 1397
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 715 TACGAAGATTCGTTGACTACTTCTTCAGGGACGACCATGGAAGGAAGCAGAGGAAGTAGC 774
Query 1398 ATAGAAGAGTTTCTTGAGGAAGTTAAAGAGAGGTTAAAAGGTGAGCTTCAAGGAAAAGCA 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATAGAAGAGTTTCTTGAGGAAGTTAAAGAGAGGTTAAAAGGTGAGCTTCAAGGAAAAGCA 834
Query 1458 GCTCTCAAGAGAAGTTCATCAGTTAGAGGAAGCGGGATCGAGACTCCTTTCAGCGAAAGA 1517
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 835 GCTCTCAAGAGAAGTTCATCAGTGAGAGGAAGCGGTATCGAGACTCCTTTCAGCGAAAGA 894
Query 1518 CCTTCTCCGAGGTCTGAATCGATGAGATCATATGCAGTGAGTGAGGTTCAGTGCAATGCA 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CCTTCTCCGAGGTCTGAATCGATGAGATCATATGCAGTGAGTGAGGTTCAGTGCAATGCA 954
Query 1578 CCAGACTCTCCTACTGAGTTTATAAGTAGAGATACTAGAAAACTTTTGGCAGAGAGATTG 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 955 CCAGACTCTCCTACTGAGTTTATAAGTAGAGATACTAGAAAACTTTTGGCAGACAGATTG 1014
Query 1638 AAGAATGTTTTGAGAAAAGAGATGACTCCTTCACATGATTCTGTGACCAAATCTAGTAGC 1697
|||||||||||||||||||| || ||||||||| ||||||||||| |||| |||||||
Sbjct 1015 AAGAATGTTTTGAGAAAAGAAATTACTCCTTCAGATGATTCTGTGGTTAAATGTAGTAGC 1074
Query 1698 CGTTTGCGACCTACTGTGTCGGATGCAGCGAAACAAGCTGAGGAAATCAATCAAGAAGA- 1756
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1075 CGTTTACGACCTACTGTGTCGGATGCAGCGAAACAAGCTGAGGAAATTAATCAAGAAGAC 1134
Query 1757 T-G----T---T-----T----CTAAGAAAGAGTCTTTATCACCAAGAAATCTCAAAAGA 1799
| | | | | |||||||||| |||||||||||||||||||||||||||
Sbjct 1135 TCGAGAATAAATGGAGATGTTTCTAAGAAAGATTCTTTATCACCAAGAAATCTCAAAAGA 1194
Query 1800 TCACTATCTGCTCCTGTCTCAGGGACATCGTTTGGTAAGCTTTTGTTAGAGGACCGGCAT 1859
||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 1195 TCATTATCTGCTCCTGTCTCAGGAACATCATTTGGTAAGCTTCTGTTAGAGGACCGGCAT 1254
Query 1860 GTTTTGACAGGCGCACAGATCATGAGGAAGCACGAGGCTACAATAACAGAGCGAGAAGAA 1919
|||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1255 GTTTTGACTGGCGCGCAGATCATGAGAAAGCACGAGGCTACGATAACAGAGCGAGAAGAA 1314
Query 1920 ACAGAATCAGAAACAGAACCTGTTGTTGTTGATCCAATCAGGAGGAAAGAAAGATTCAAT 1979
|||||| | ||| |||||| | ||||| ||||||||||||||||||||||||
Sbjct 1315 ACAGAA-C-----CAGT---TGTTGT-G--GATCCTATCAGGAGGAAAGAAAGATTCAAT 1362
Query 1980 CTTAGGAAGAAAGTGTCCAGCTTTAGATCAACTCTTAGAGGAAGAATCTTTGGTAAGAAG 2039
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CTTAGGAAGAAAGTTTCCAGCTTTAGATCAACTCTTAGAGGAAGAATCTTTGGTAAGAAG 1422
Query 2040 ATACGTTCAATGATCGAATCAAACAGTTTCGAGGATGAATCAATCAAAGACTTCGTGACC 2099
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1423 ATACGTTCAATGATCGAGTCAAACAGTTTCGAGGATGAATCAATCAAAGATTTCGTGACG 1482
Query 2100 GGATCGAAGTTTAACAACTTTTACGATCGAAATGAGAATTCAACAGAAGTGCCTCCAAGC 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GGATCGAAGTTTAACAACTTTTACGATCGAAATGAGAATTCAACAGAAGTGCCTCCAAGC 1542
Query 2160 CCTGCATCAGTCTGCAGTAGTACACCAGAAGAGTTCTGGAGAAATGTCGATTATCTCAGC 2219
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1543 CCTGCATCAGTCTGCAGCAGTACACCAGAAGAGTTCTGGAGGAATGTCGATTATCTCAGC 1602
Query 2220 CAGGTTTCAACACCTGACGTGACTGTATCGGATGAGAATGGTATGCCTCAAGTTTTCAGA 2279
|||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1603 CAGGTTTCGACACCCGATGTGACTGTATCGGATGAGAATGGTATGCCTCAAGTCTTCAGA 1662
Query 2280 GACATTAGTTCCAATCTAAGTGAACTAAGAAGACAGATAAATGAGCTTGAATCCGAGGTA 2339
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1663 GACATCAGTTCTAATCTAAGTGAACTAAGAAGACAGATAAATGAGCTTGAGTCCGATGTA 1722
Query 2340 CAAGTGCGAACACCTGTGGAAGAAGAACCGATTCAAGAGATTGAGACCATAGTTGATTTA 2399
|||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1723 CAAGTGAGAACGCCTGTGGAAGAAGAACCGACTCAAGAGACTGAGACCATAGTTGATTTA 1782
Query 2400 GGAAATCCAGACAAAGTATTTGTGAGAGATCTTCTTGTGGCTTCTGGTTTGTATGAAGGC 2459
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1783 GGAAATCCAGACAAAGTATTTGTGAGAGATCTTCTTGTGGTTTCTGGTTTGTATGAAGGG 1842
Query 2460 ACATCAGATATATCATTGTCTAGATGGGATCCATTAGCAAAGCTTATAAAAAAGTCTGTT 2519
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1843 ACATCAGATATATCATTGTCTAGATGGGATCCATTAGCAAAGCCTATAAAAAAGTCTGTT 1902
Query 2520 CTTgaagaaacaaaagagaatctcaagaaaagaagcaatcagaatcaagaagaCGACGAC 2579
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1903 CTTGAAGAAGCAAAAGAGAATCTCAAGAAAAGAAGCAATCAGAATCAAGAAGACGAAGAT 1962
Query 2580 ACAGGAGAGACTA---CTATAAGTGAAGAAAATCACAACATACTGTTTGATCTTCTGAAT 2636
|| ||||||| || |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1963 ACCGGAGAGAATAATACTATAAGTGAAGAAAACCATAACATACTGTTTGATCTTCTGAAT 2022
Query 2637 GAAGTACTTACGGTGGTGCTTGGACCATTGACAAAGTCAGGTTTCAAGAACAAACTTTTG 2696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 GAAGTACTTACGGTGGTGCTTGGACCATTGACAAAGTCAGGTTTCAAGAACAAACTTTTG 2082
Query 2697 AGTTCATCTGTGTCTGAATCAACGACTATACGAGGTAAATATCTGTTAGAATCAACATGG 2756
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2083 AGTTCATCGGTGTCTGAATCGACGACTATACGAGGTAAATATCTGTTGGAATCAACATGG 2142
Query 2757 AAGATCATGTCGGAGTATTTATATTCTCAGCCAGAGAGACCTTTTTGTTCATTGGATGGG 2816
| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2143 AGGATCATGTCCGAGTATTTATATTCTCAGCCAGAGAAACCTTTCTGTTCATTGGATGGG 2202
Query 2817 ATCATTGGTTGGGACATGGATAGGTTTCCATGGAGTGCTTTGATTGGTGAAGAAGTTAAT 2876
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2203 ATCATTGGTTGGGACATGGATAGGTTTCCATGGAGTGGTTTGATTAGTGAAGAAGTTAAT 2262
Query 2877 GTGTTGGGGAAAGAAGTTGAAGGTATGATCATGGCAGATCTTGTTGAGGAACTTGTTAAG 2936
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2263 GTGTTGGGGAAAGAAGTTGAAGGTATGATCATGGCGGATCTTGTTGAGGAGCTTGTTAAG 2322
Query 2937 GATCTAAGAAGACAAATATGTTAA 2960
|||||||||||||||||||| |||
Sbjct 2323 GATCTAAGAAGACAAATATGCTAA 2346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119831910770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5