BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17560.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480649 jgi|Araly1|480649|fgenesh2_kg.3__3350__AT2G17560.1 946 0.0
Ahg896923 jgi|Araly1|896923|Al_scaffold_0005_889 135 4e-31
> Ahg480649 jgi|Araly1|480649|fgenesh2_kg.3__3350__AT2G17560.1
Length=752
Score = 946 bits (512), Expect = 0.0
Identities = 688/765 (90%), Gaps = 44/765 (6%)
Strand=Plus/Plus
Query 39 TACTCACTCATACGCTCTCTCGTCAAACaaa-aaaaaaaaaCCTAAAGAAACTTCGACAT 97
|||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||
Sbjct 1 TACTCACTCATACGCTCT-TCGTCAAACAAACAAAAAAAACCCTACAGAAACTTCGACAT 59
Query 98 GAAAGGCGGCGAATCCAAAGCTGAAGCAACGAGCACTGATCAGAGACTCAAAACCAGAGG 157
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 GAAAGGCGGCGAATCCAAAGCTGAAGCTACGAGCACTGATCAGAGACTCAAAACCAGAGG 119
Query 158 TAGAAAGGCTGGGAAGAAGACGAAGAAGGATCCAAATCAACCTAAGAGACCTCCAAGTGC 217
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAGAAAGCCTGGGAAGAAGACGAAGAAGGATCCAAATCAACCTAAGAGACCTCCAAGTGC 179
Query 218 TTTCTTCGTCTTCCTTGAGGATTTCCGAAAAGAGTTTAACCTAGCGAATCCTAATAACAA 277
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TTTCTTCGTCTTCCTTGAGGATTTCCGAAAAGAGTTTAACCTAGCGAATCCGAATAACAA 239
Query 278 ATCCGTCGCTACTGTTGGTAAGGCTGCTGGAGCTAGATGGAAGGCAATGACTGATGAAGA 337
||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 240 ATCCGTCGCTACTGTTGGTAAGGCTGCTGGAGCTAGATGGAAGTCTATGACTGAGGAAGA 299
Query 338 TAAAGCTCCTTACGTCGCTAAGGCTGAGAGCAGAAAGACTGAATATATTAAGAATGTGCA 397
|||||| ||||| ||||| ||||| ||||||||||||||||||||| |||||| | ||||
Sbjct 300 TAAAGCGCCTTATGTCGCCAAGGCCGAGAGCAGAAAGACTGAATATCTTAAGACTATGCA 359
Query 398 ACAGTACAACTTGAAACTGGCTAGTGGAACCAATAGAG---AAGAGGATGACTCTGACAA 454
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 ACAGTACAACATGAAACTGGCTAGTGGAACCAATAGAGGTGAAGAGGATGACTCTGACAA 419
Query 455 ATCCAAGTCTGAAGTTGATGAAGCAGTAAGCGAAGAGG-----AGGCAG-A--AG-A--- 502
||||||||||||||| |||||||||| ||||||||||| | |||| | || |
Sbjct 420 ATCCAAGTCTGAAGTGGATGAAGCAGGAAGCGAAGAGGTTTTTATGCAGGAGGAGGAAGA 479
Query 503 CGACGATTGAAGCAT-CTA---GGTCTTGCTATTGACTTGACTCAGATTTGAGAATGTAA 558
|||||||||| || | ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 480 CGACGATTGAGGCTTTCTACTAGGTCTTGCGATTGACTTGACTCAGATTTGAGAATGTAA 539
Query 559 ACTTGCTTAG-GTTTATGACCAAAAACTTTTAAAAAACTCTTATTTATGCTTTGTGTTTG 617
|||||||||| | ||||||||||||||| |||| || | | ||||||||||||||
Sbjct 540 ACTTGCTTAGAG---ATGACCAAAAACTTT-AAAA--CTGGT-T--ATGCTTTGTGTTTG 590
Query 618 TGATATTTGAACCTCATTTGCTACATCAATGTTGTTTTAGGTCAGTCTGTAGGGATAATA 677
|| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 591 TGGTATTTGAACCTCATTTGCTACTTCAATGTGGTTTTAGGTCAGTTTGTAGGGATAATA 650
Query 678 TCACTTGACTGCTATATTT-CCCCTATTTCCTTATGTTTT-ACTAGTATTCATATGTTCT 735
||||||||||||||||||| |||| ||||| || ||||| ||||| ||| ||||||| |
Sbjct 651 TCACTTGACTGCTATATTTTCCCC-ATTTCATT--GTTTTCACTAGAATTTATATGTTGT 707
Query 736 TCAACTTTG--TA--TG--A-G-TTTTAGTATCAGTTTTATTTCT 772
||||||||| || || | | |||||||||||| |||||||||
Sbjct 708 TCAACTTTGGATAAGTGGTATGGTTTTAGTATCAGCTTTATTTCT 752
> Ahg896923 jgi|Araly1|896923|Al_scaffold_0005_889
Length=264
Score = 135 bits (73), Expect = 4e-31
Identities = 75/76 (99%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 141 AGACTCAAAACCAGAGGTAGAAAGGCTGGGAAGAAGACGAAGAAGGATCCAAATCAACCT 200
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 154 AGACTCAAAACCAGAGGTAGAAAGCCTGGGAAGAAGACGAAGAAGGATCCAAATCAACCT 213
Query 201 AAGAGACCTCCAAGTG 216
||||||||||||||||
Sbjct 214 AAGAGACCTCCAAGTG 229
Score = 110 bits (59), Expect = 2e-23
Identities = 59/59 (100%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 84 AGAAACTTCGACATGAAAGGCGGCGAATCCAAAGCTGAAGCAACGAGCACTGATCAGAG 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AGAAACTTCGACATGAAAGGCGGCGAATCCAAAGCTGAAGCAACGAGCACTGATCAGAG 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5