BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17570.1 Length=1413 Score E Sequences producing significant alignments: (Bits) Value Ahg480651 jgi|Araly1|480651|fgenesh2_kg.3__3352__AT2G17570.1 1563 0.0 > Ahg480651 jgi|Araly1|480651|fgenesh2_kg.3__3352__AT2G17570.1 Length=1155 Score = 1563 bits (846), Expect = 0.0 Identities = 1071/1171 (91%), Gaps = 49/1171 (4%) Strand=Plus/Plus Query 235 GGAATCTCAAATGGCTGAACTTCCTGGTCAAATAAGACATATAG-GCGGTCGAATGAGTC 293 |||||||||||||||||||||||| ||||||||||||| ||| | ||||| |||| |||| Sbjct 26 GGAATCTCAAATGGCTGAACTTCCAGGTCAAATAAGACGTAT-GAGCGGTGGAATTAGTC 84 Query 294 AACTGCTAGAGCAGATATATGGGTTTTCGAGAAGATCTTTGTTTCGGGTCATATCTATGG 353 || || ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 85 AATTGATAGAGCAGATATACGGGTTTTCGAGAAGATGTTTGTTTCGGGTCATATCTATGG 144 Query 354 GTCCTATACCTTGTCATATTGCCTTTATCATGGATGGAAATCGGAGATATGCAAAGAAGT 413 ||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| ||| Sbjct 145 GTCCTATACCTAGTCATCTCGCCTTTATCATGGATGGAAATAGGAGATATGCAAAAAAGC 204 Query 414 GTGGTCTTTTAGATGGGTCTGGTCA-CAAAGCGGGGTTTTCTGCGCTTATGTCGATGCTG 472 ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 205 ACGGTCTAGAAGATGGGTCTGGTCATC-AAGCGGGGTTTTCTGCGCTTATGTCGATGCTG 263 Query 473 CAATACTGCTACGAGCTGGGTATCAAGTATGTAACGATATACGCATTTAGCATAGATAAT 532 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 264 CAGTACTGCTACGAGCTAGGTATCAAGTATGTAACGATATACGCATTTAGCATAGATAAT 323 Query 533 TTTAGAAGAAAACCTGAGGAGGTTGAGTCTGTAATGGATTTGATGCTGGAAAAGATAAAG 592 ||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 324 TTTAGAAGACAACCTGAGGAGGTTCAGTCTCTAATGGATTTGATGTTGGAAAAGATAAAG 383 Query 593 TCTTTGCTTGAAAAAGAGAGTATTGTGCATCAGTATGGGATTCGGGTCTATTTTATCGGT 652 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 384 TCTTTGCTTGAGAAAGAGAGTATCGTGCATCAGTATGGGATTCGGGTCTATTTTATTGGT 443 Query 653 AACTTAGCGCTTCTAAATGACCAAGTGAGAGCTGCTGCAGAAAAAGTCATGAAAGCCACA 712 ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 444 AACTTGGCGCTTCTAAATGACCAAGTGAGAGCTGCTGCCGAAAAAGTCATGAAGGCCACA 503 Query 713 GCTAAGAATAGTCGGGTAGTGCTTCTCATTTGCATTGCCTATAACTCGACAGATGAGATC 772 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 504 GCTAAGAATAGTCGGGTAGTGCTTCTCATCTGCATTGCCTATAACTCGACAAATGAGATC 563 Query 773 GTACAAGCTGTCAAGAAATCTTGTATTAACAAGTCAGACAATATTGAAGCATCT---AAT 829 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || Sbjct 564 GTACAAGCTGTCAAGAAATCTTGTATTAACACGTCAGACAATATGGAAGCATCTGGAAAC 623 Query 830 TATAAACACGAGGATAGCGATAGTGATATAGAAGGAACAGATATGGAGAACCAAGAGAAG 889 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 624 TATAAACACGAGGATAGAGATAGTGATATAGAAGGAACAGATATGGAGAACCAAGAGAAG 683 Query 890 AAGATACAGTTGGTGGATATTGAGGAGAATATGCAGATGAGCGTGGCGCCGAATCCTGAT 949 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 AGGATACAGTTGGTGGATATTGAGGAGAATATGCAGATGAGCGTGGCGCCGAATCCTGAT 743 Query 950 ATACTCATCAGGAGTTCAGGAGAGACGAGGCTGAGCAATTTTCTCTTATGGCAAACAGGT 1009 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 744 ATACTCATCAGGAGTTCAGGAGAGACGAGGCTGAGCAATTTTCTTTTATGGCAAACAGGT 803 Query 1010 AATACCCAGCTCTGCTCTCCGGCTGCTCTGTGGCCTGAGATTGGTTTGAGGCATCTGCTC 1069 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 804 AATACCCAGCTCTTCTCTCCGGCTGCTCTGTGGCCTGAGATTGGTCTGAGGCATCTGCTC 863 Query 1070 TGGGCTATATTGAACTTCCAAAGAAATCATTCATACTTGGAAAAGAGGAAGAAACAATTA 1129 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 864 TGGGCTGTATTGAACTTCCAAAGAAATCATTCATACTTGGAGAAGAGGAAGAAACAATTG 923 Query 1130 TGATTGTCTTGAAAGGAGACTAGTGAAGGATATACAAAAGCTCTCTTCTCTATTTGGCTT 1189 |||||||| |||| | | | |||||||||||||||||||||| ||| |||||||| Sbjct 924 TGATTGTCCTGAA-G-----T-G--AAGGATATACAAAAGCTCTCTTTTCTTTTTGGCTT 974 Query 1190 TGTAATGTGATGTGATGCTCTTGTGGTATACTATCAAAAGGAAACTTGGGATTACATAGA 1249 |||||||||||||||||||||||||| | | || | |||||| Sbjct 975 TGTAATGTGATGTGATGCTCTTGTGG-------------G-A---TT---A---CATAGA 1011 Query 1250 ACAAGCAATGTATTTTACACACGAACTCATTTGAGTTTTTCTTTATGAATCCTTAACCAA 1309 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1012 ACAAGCAATGTATTTTACACACGAACTCATTTGAGTTTTTCTTTATGAACCCTTAACCAA 1071 Query 1310 AACTCCAAAAGTCCTCTCTAAAGACATCTTACTTCCTGTTCTGT-CTTGTAAGATCCAGA 1368 || ||| ||| || ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1072 AAGTCC-----TCC-CT--AAAGACATCTTACTTCCTGTTCTGTTCTTGTAAGATCCAGA 1123 Query 1369 ATCTT-AACATTTGTGTTTCACGAGTGtttt 1398 |||| || |||||||||||||||||||||| Sbjct 1124 CTCTTTAAGATTTGTGTTTCACGAGTGTTTT 1154 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52831169815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5