BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17570.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480651 jgi|Araly1|480651|fgenesh2_kg.3__3352__AT2G17570.1 1563 0.0
> Ahg480651 jgi|Araly1|480651|fgenesh2_kg.3__3352__AT2G17570.1
Length=1155
Score = 1563 bits (846), Expect = 0.0
Identities = 1071/1171 (91%), Gaps = 49/1171 (4%)
Strand=Plus/Plus
Query 235 GGAATCTCAAATGGCTGAACTTCCTGGTCAAATAAGACATATAG-GCGGTCGAATGAGTC 293
|||||||||||||||||||||||| ||||||||||||| ||| | ||||| |||| ||||
Sbjct 26 GGAATCTCAAATGGCTGAACTTCCAGGTCAAATAAGACGTAT-GAGCGGTGGAATTAGTC 84
Query 294 AACTGCTAGAGCAGATATATGGGTTTTCGAGAAGATCTTTGTTTCGGGTCATATCTATGG 353
|| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 85 AATTGATAGAGCAGATATACGGGTTTTCGAGAAGATGTTTGTTTCGGGTCATATCTATGG 144
Query 354 GTCCTATACCTTGTCATATTGCCTTTATCATGGATGGAAATCGGAGATATGCAAAGAAGT 413
||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| |||
Sbjct 145 GTCCTATACCTAGTCATCTCGCCTTTATCATGGATGGAAATAGGAGATATGCAAAAAAGC 204
Query 414 GTGGTCTTTTAGATGGGTCTGGTCA-CAAAGCGGGGTTTTCTGCGCTTATGTCGATGCTG 472
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 205 ACGGTCTAGAAGATGGGTCTGGTCATC-AAGCGGGGTTTTCTGCGCTTATGTCGATGCTG 263
Query 473 CAATACTGCTACGAGCTGGGTATCAAGTATGTAACGATATACGCATTTAGCATAGATAAT 532
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CAGTACTGCTACGAGCTAGGTATCAAGTATGTAACGATATACGCATTTAGCATAGATAAT 323
Query 533 TTTAGAAGAAAACCTGAGGAGGTTGAGTCTGTAATGGATTTGATGCTGGAAAAGATAAAG 592
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 324 TTTAGAAGACAACCTGAGGAGGTTCAGTCTCTAATGGATTTGATGTTGGAAAAGATAAAG 383
Query 593 TCTTTGCTTGAAAAAGAGAGTATTGTGCATCAGTATGGGATTCGGGTCTATTTTATCGGT 652
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 384 TCTTTGCTTGAGAAAGAGAGTATCGTGCATCAGTATGGGATTCGGGTCTATTTTATTGGT 443
Query 653 AACTTAGCGCTTCTAAATGACCAAGTGAGAGCTGCTGCAGAAAAAGTCATGAAAGCCACA 712
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 444 AACTTGGCGCTTCTAAATGACCAAGTGAGAGCTGCTGCCGAAAAAGTCATGAAGGCCACA 503
Query 713 GCTAAGAATAGTCGGGTAGTGCTTCTCATTTGCATTGCCTATAACTCGACAGATGAGATC 772
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 504 GCTAAGAATAGTCGGGTAGTGCTTCTCATCTGCATTGCCTATAACTCGACAAATGAGATC 563
Query 773 GTACAAGCTGTCAAGAAATCTTGTATTAACAAGTCAGACAATATTGAAGCATCT---AAT 829
||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||
Sbjct 564 GTACAAGCTGTCAAGAAATCTTGTATTAACACGTCAGACAATATGGAAGCATCTGGAAAC 623
Query 830 TATAAACACGAGGATAGCGATAGTGATATAGAAGGAACAGATATGGAGAACCAAGAGAAG 889
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TATAAACACGAGGATAGAGATAGTGATATAGAAGGAACAGATATGGAGAACCAAGAGAAG 683
Query 890 AAGATACAGTTGGTGGATATTGAGGAGAATATGCAGATGAGCGTGGCGCCGAATCCTGAT 949
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 AGGATACAGTTGGTGGATATTGAGGAGAATATGCAGATGAGCGTGGCGCCGAATCCTGAT 743
Query 950 ATACTCATCAGGAGTTCAGGAGAGACGAGGCTGAGCAATTTTCTCTTATGGCAAACAGGT 1009
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 744 ATACTCATCAGGAGTTCAGGAGAGACGAGGCTGAGCAATTTTCTTTTATGGCAAACAGGT 803
Query 1010 AATACCCAGCTCTGCTCTCCGGCTGCTCTGTGGCCTGAGATTGGTTTGAGGCATCTGCTC 1069
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 804 AATACCCAGCTCTTCTCTCCGGCTGCTCTGTGGCCTGAGATTGGTCTGAGGCATCTGCTC 863
Query 1070 TGGGCTATATTGAACTTCCAAAGAAATCATTCATACTTGGAAAAGAGGAAGAAACAATTA 1129
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 864 TGGGCTGTATTGAACTTCCAAAGAAATCATTCATACTTGGAGAAGAGGAAGAAACAATTG 923
Query 1130 TGATTGTCTTGAAAGGAGACTAGTGAAGGATATACAAAAGCTCTCTTCTCTATTTGGCTT 1189
|||||||| |||| | | | |||||||||||||||||||||| ||| ||||||||
Sbjct 924 TGATTGTCCTGAA-G-----T-G--AAGGATATACAAAAGCTCTCTTTTCTTTTTGGCTT 974
Query 1190 TGTAATGTGATGTGATGCTCTTGTGGTATACTATCAAAAGGAAACTTGGGATTACATAGA 1249
|||||||||||||||||||||||||| | | || | ||||||
Sbjct 975 TGTAATGTGATGTGATGCTCTTGTGG-------------G-A---TT---A---CATAGA 1011
Query 1250 ACAAGCAATGTATTTTACACACGAACTCATTTGAGTTTTTCTTTATGAATCCTTAACCAA 1309
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1012 ACAAGCAATGTATTTTACACACGAACTCATTTGAGTTTTTCTTTATGAACCCTTAACCAA 1071
Query 1310 AACTCCAAAAGTCCTCTCTAAAGACATCTTACTTCCTGTTCTGT-CTTGTAAGATCCAGA 1368
|| ||| ||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1072 AAGTCC-----TCC-CT--AAAGACATCTTACTTCCTGTTCTGTTCTTGTAAGATCCAGA 1123
Query 1369 ATCTT-AACATTTGTGTTTCACGAGTGtttt 1398
|||| || ||||||||||||||||||||||
Sbjct 1124 CTCTTTAAGATTTGTGTTTCACGAGTGTTTT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5