BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17580.1
Length=2572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931619 jgi|Araly1|931619|scaffold_304076.1 3565 0.0
> Ahg931619 jgi|Araly1|931619|scaffold_304076.1
Length=2327
Score = 3565 bits (1930), Expect = 0.0
Identities = 2198/2327 (94%), Gaps = 20/2327 (1%)
Strand=Plus/Plus
Query 26 ATGTTTTCGAGTCTTTGCCATGGCGGGTTTCATTAAACGCAAAGGCAACGTATTTTTTCA 85
||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 3 ATGTTTTCGAGTCTTTGCCATGGCGGGTTTCATTAGGCGCAACGGAAACGTATTATTTCG 62
Query 86 TTCTCAAGCCTTAGCTGCTGTCTACTCCAAGTTGCAGAGAAGTAATTGCACGCTTGCTGA 145
||||||| || || | ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 63 TTCTCAAACCCTATCCGCTATCTACTCCAAGTTGCAGAGAAGTAACTGCACGCTTGCTGA 122
Query 146 GGGATTCATGGAGAAGTGTTCTAGCATTCG-TCAAGTTATTGATGAAGATATAAATTCAG 204
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 123 GGGAGTCATGGAGAAGTGTTCTAGCATTCGTTC-AGTTATTGATGAAGATATAAATTCAG 181
Query 205 TTGATACATCTAAGTGGAAGAAGGTACGAGCAAGTGATGCTGGAATTAAAAATTCAATGA 264
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 182 TTGATACATCGAAGTGGAAGAAGGTACGAGCAAGTGATGCTGGAATTAGAAATTCAATGA 241
Query 265 TCCCTGAATCCTCTATGAATGTCTTGAGACTCCTTAGACGTCAAGGTTTCGATGCATACC 324
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 242 TCCCTGAATCCTCTATGAATGTCTTGAGACTCCTTAGACGGCAAGGTTTCGATGCATACC 301
Query 325 TTGTTGGTGGATGTGTAAGGGATTTAATACTGAATAGAGTGCCAAAAGACTATGATGTGA 384
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 302 TTGTTGGTGGATGTGTAAGGGATTTGATACTGCATAGAGTGCCAAAAGACTATGATGTGA 361
Query 385 TCACTACAGCTGATCTTAAGCAGATCCGGCGGCTGTTTCATCGTGCTCAGGTTATTGGGA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCACTACAGCTGATCTTAAGCAGATCCGGCGGCTGTTTCATCGTGCTCAGGTTATTGGGA 421
Query 445 AACGGTTTCCTATTTGTCATGTTTGGATGGGAGGTTCGATAATTGAGGTGTCCAGTTTTG 504
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 422 AACGGTTTCCTATTTGTCATGTGTGGATGGGAGGTTCGATAATTGAGGTGTCCAGTTTTG 481
Query 505 ATACCGTGG--CAC----ACAGTGA-CA-G----TGATTTGGAGAAGTCTAAAGAGAAAT 552
||||||||| ||| ||||||| || | ||||||||||||||||||||||||||
Sbjct 482 ATACCGTGGCACACAGTGACAGTGAGCATGAAAATGATTTGGAGAAGTCTAAAGAGAAAT 541
Query 553 CTGGTGTCTCACTGGATACCAAGGCAAACAAGAATAACAGCCTCTTCAAAATGTATTCTG 612
||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 542 CTGGTGTTTCACTGGATACCAAGGCAAACAAAAATAACAGCCTCTTCACAATGTATTCTG 601
Query 613 GTTGGGACATTAAAGACTGCAAACGCTGGAGGAATAGCTTGCAGCGGGATTTCACTATTA 672
||||||| | |||||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 602 GTTGGGATGTAAAAGACTGTAATCGTTGGAGGAATAGCTTGCAGCGGGATTTCACAATTA 661
Query 673 ACAGCTTGTTCTATAATCCCTTTGATTTTACAATTTATGACTACGCCAATGGAATGGAAG 732
|||| || ||||||||||||||||| || | |||||||||||| ||||||||||||||||
Sbjct 662 ACAGTTTATTCTATAATCCCTTTGAGTTAAAAATTTATGACTATGCCAATGGAATGGAAG 721
Query 733 ACTTGACGGATCTTAAGCTTCGTACACTTGTCCCTGCACATTTATCATTCAAGGAAGATT 792
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 722 ACTTGACGGATCTTAAGCTTCGTACACTTGTCCCTGCACATTTGTCATTCAAGGAAGATT 781
Query 793 GTGCTAGAATTCTTAGGGGGTTAAGAATTGCAGCACGATTGGGTCTATCATTGTCAAAGG 852
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTGCTAGAATTCTGAGGGGGTTAAGAATTGCAGCACGATTGGGTCTATCATTGTCAAAGG 841
Query 853 ATGTTAAGACTGCAATACCTGAATTTGTATCTTCCGTTGCAAATCTGGACCAGTTTAGAT 912
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 842 ATGTTGAGACTGCAATACCTGAATTTGTATCTTCCGTTGCAAATTTGGACCAGTTTAGAT 901
Query 913 TAATCATGGAAATGAATTATATGCTTGCGTATGGAGCTGCTGCGCCGTCCATCCTTCTTC 972
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 902 TAATCATGGAAATGAATTATATGCTTGCGTATGGAGCTGCTGCGCCTTCCATCCTTCTTC 961
Query 973 TCATGAAGTTCAAACTACTTCATGTGTTACTTCCTTTTCAGGCAGCTTACCTGGATCAAG 1032
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 962 TCATGAAGTTCAAACTACTTCACGTGTTACTTCCTTTTCAGGCAGCTTACCTGGATCAAG 1021
Query 1033 CTAGTAAAACATCTCTATCAAGTTCCTTGATGCTAGTGAGGTTATTCTCCAATATGGATA 1092
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1022 CTAGTGAAACATCTCTATCAAGTTCCTTGATGCTAGTGAGATTATTCTCCAATATGGATA 1081
Query 1093 AATTGGTTTCCTGCGATCAACCTGCTGACCCCAAACTATGGATTGCAGTGTTGGCTTTTC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1082 AATTGGTTTCCTGCGATCAACCTGCTGACCCCAAACTATGGATTGCAGTGTTGGCCTTTC 1141
Query 1153 ACATTGCACTAGTGCGTAACCCCCAAGAGGCTATTGTGGTGCGCGCTTTTGCTGCTTTGC 1212
||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 1142 ACATTGCACTAGTGCGTAACCCCCAGGAGGCTATTGTGGTGCGTGCTTTCGCCGCTTTGC 1201
Query 1213 TCTACCATGGAAACTGGAGCAAAGCTGTCGAATTTGCTAGAGAACATGAAACTTCAGT-G 1271
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
Sbjct 1202 TCTACCATGGAAACTGGAACAAAGCTGTCAAATTTGCTAGAGAACATGAAACTTCAGTAG 1261
Query 1272 ATCGGATACGCTCCTGAGGTATCTAAATCTTCGAGAAAGAGATCTGATGAAGATCTTGCA 1331
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1262 -TCGGATACGCTCCTGAGGTATCTAAATTTTCGAGAAAGAGATCTGATGAAGATCTTGCA 1320
Query 1332 GAAGCAGTTTCAGAATTCACATGTCTATTAAAAGATACTCAATACGTTCTGACTGATAAA 1391
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1321 GAAGCAGTTTCAGAATTCACATGTCTTTTAAAAGATACTCAATACGTTCTGACTGATATA 1380
Query 1392 GAGGCTCTCCGGGAAGCCCTATACCTATACCCGGATTTCAAATTCTCTGGTTTGGTGTTT 1451
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 GAGGCTCTCCGCGAAGCCCTATACCTATACCCGGATTTCAAATTCTCTGGTCTGGTGTTT 1440
Query 1452 ATACCGAAGAAAAAGGGGAGAGATGTAGCAGAAGGGTTTATGAGATTGAGTGATGTGGAA 1511
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1441 ATACCGAAGAAAAAGGCGAGAGATGTAGCAGAAGGGTTTGCGAGATTGAGTGATGTTGAA 1500
Query 1512 TCATATGAAAGCCAAAAAG-AGGGATTCTCTATCGACTATGTCTTGCTTGGGAAGGGAAA 1570
||||| |||||| |||||| ||||| ||||||| |||||| ||| ||||||||||||||
Sbjct 1501 TCATACGAAAGC-AAAAAGGAGGGAATCTCTATTGACTATCTCTCACTTGGGAAGGGAAA 1559
Query 1571 TCCATGCGAAGTAAGATTTGTTCTTGGCAAAATCATTCTGGACACCATCACAGAAGGTAC 1630
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1560 TCCATGCGAAGTAAGATTTGTTCTTGGCAAAATCATTCTGGACACCATTACAGAAGGTAT 1619
Query 1631 CGTCATCGAACCTCTAAACTCTGTCAAGAAGAAGCAGAGCACCAGAAATCATATTGTTCC 1690
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1620 CGTCATTGAACCTCTAAACTCTGTCAAGAAGAAGCAGAGCACCAGTAATCAAATTGTTCC 1679
Query 1691 AGCGGCTTGCTTGGAGAAGAAGGATGAGTTGTTCGTTTCTAAATCGTCAAAAGAGGATAA 1750
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1680 AGCAGCTTGCTTGGAGAAGAAGGATGAGTTGTTCGTTTCTAAATCCTCAAAGGAGGATAA 1739
Query 1751 CAACAATCAAACTCCAGTCCATGACTCAAATGCATCATCTGTTCTAAAGATTTTGAAGAG 1810
||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1740 CAACAATCACACTCCAGTCTATGACTCAAATGCATCATCTGTTCTGAAGATTTTGAAGAG 1799
Query 1811 GACGAGAGAAGACAGTGAGCAGAACAAT-GACCAAGAGACCGAGGTATGTCCAAGAACCC 1869
|||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||
Sbjct 1800 GACGAGAGAAGACAGTGAGCAGAAGA-TCGACCAAGAGACCGAGGTATGTCCAAGCACCC 1858
Query 1870 CCTCTGGTCCAGCAAAGAATCAAGATCAGTCTGTAGTTCAAATGCTTAAAAGACGGCGTA 1929
|||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 1859 TCTCTGGTCCAGCAAAGAATCAAGATCAGTCGGTAGTTCAAAAGCTGAAAAGACGGCGTA 1918
Query 1930 GCAAAGAAGCACCAGTCTCTGAGCCGCCTAAGCAAAAGACTTCAAAGAGGTCGAGATCAG 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1919 GCAAAGAAGCACCAGTCTCTGAGCCGCCTAAGCAAAAGACTTCAAAGAGGTCGAGATTAG 1978
Query 1990 ATGACCAAGAGGCGGTTGGAAGTCTCTCTGTTCCAGCAAAGATTCAGCATCAGAGTAACA 2049
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 1979 ATGACCAAGAGGCGGTTGGAAGTATCTCTGTTCCAGCAAAAAATCAGCATCAGAGTAACA 2038
Query 2050 AGCATGACACAAATGCACCGATCTGTGAGCTACCTAAGCAAAAGACTTCAAAGAACCATT 2109
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 2039 AGCATGACACAAATGCACCGATCTGTGAGCCGCCTAAACAAAAGACTTCAAAGAACCGTT 2098
Query 2110 CGAAGGAGTCACGAAAAGTGAAACACAACGACTTGCCTGTGAAGGAGATTAAAGAAGCAA 2169
|||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 2099 CGAAGGAGACACAAAAAGTGAAACACAACGACTTGCCTACGAAGGAGATTCAAGAAGCAA 2158
Query 2170 AACAAGGCTTTGTTTCTGACAAATCTATGAGTGATCTTCTACAAGTTCTTGAGAAATCAA 2229
|||| ||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 2159 AACACGGCTTGGTGTCTGATAAATCTATGAGTGATCTTCTAAAAGTTCTTGAGAAATCAA 2218
Query 2230 GTCAGCAAGTGTCTAGCAAAGAGGAGAACAACTCTTTATCATCAGAGAAGACGAATAGAC 2289
||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| ||||
Sbjct 2219 GTCAGCAAGTGTCTAGCAAAGAGGAGAGCGACTCCTTATTATCAGAGAAGACGAAGAGAC 2278
Query 2290 CGAGAAAACTCTCAAGTCTCTTCAGGTGAAATGGTTACCTTATTGGT 2336
||||||| |||||||||||||| |||||||||||||||| || ||||
Sbjct 2279 CGAGAAATCTCTCAAGTCTCTTTAGGTGAAATGGTTACCCTACTGGT 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96977763770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5