BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17600.1

Length=1743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906590 jgi|Araly1|906590|Al_scaffold_0003_3718                    518    7e-146


> Ahg906590 jgi|Araly1|906590|Al_scaffold_0003_3718
Length=621

 Score =  518 bits (280),  Expect = 7e-146
 Identities = 305/316 (97%), Gaps = 5/316 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTGCTAATGAAGAAGAGCCAATATGTCGTTTGTCTCATCCAACTCACTCTCACACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1    ATGGCTGCTAATGAAGAAGAGCCAATATGTCGTTTGTCTCATCCAACTCACCCTCACACC  60

Query  61   CTCTCCCGTAGAGCCGGAAGAATCCCTCCATCGGGTTGCTTCGCATGCGACAAAGAAGAA  120
            ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct  61   CTCTCCCGTAGAGCCGGAAGAATCCCTCCATTGGGTTGCTTCGCGTGCGACAAAGAAGAA  120

Query  121  CCCTCACCATGTTCTACCTTCCATTACTCCTGCACCACTTGTGATGTGGAGTTCCACGAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  CCCTCACCATGTTCTACCTTCCATTACTCCTGCACCACTTGTGATGTTGAGTTCCACGAT  180

Query  181  ATTTGTCACGTGTATCCGAGGAAGCTCACACACCCTTATCACCTTCAACATCCTCTCACC  240
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  181  ATTTGTCACGTGTATCCGAGGAAGTTCACACACCCTTATCACCTTCAACATCCTCTCACC  240

Query  241  CTCACCACTCAAAACACTGAAATAGAGATCATATCTAA--AAACCCCGAATATGGTTACA  298
            ||||||||||||| ||||||||||||||||||||||||  |||||  |||||||||||||
Sbjct  241  CTCACCACTCAAATCACTGAAATAGAGATCATATCTAACCAAACC--GAATATGGTTACA  298

Query  299  TATTCAAAAATTGTAA  314
            ||||||||||| ||||
Sbjct  299  TATTCAAAAAT-GTAA  313


 Score =  254 bits (137),  Expect = 2e-66
 Identities = 148/153 (97%), Gaps = 1/153 (1%)
 Strand=Plus/Plus

Query  1104  GTCCACTGGTTTCAGGTACAAATGTTCAAAAACTGATTGCGATGATGAGATAACAATTCA  1163
             |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct  316   GTCCACTGGTTT-AGGTACAAATGCTCAAAAACTGATTGCGACGATGAGATAACGATTCA  374

Query  1164  GATAGATTTTCGATGCATTTTAGTTCCTGATTGTTTCACCCACAAAAGTCATGAACATCC  1223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  375   GATAGATTTTCGATGCATTTTAGTTCCTGATTGTTTCACCCACAAAAGTCATGAACATCC  434

Query  1224  TTTATTCATCTCCACATCATATTCTAGAAAAGG  1256
             |||||||||||||||||| ||||||||||||||
Sbjct  435   TTTATTCATCTCCACATCCTATTCTAGAAAAGG  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65400950665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5