BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17620.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931622 jgi|Araly1|931622|scaffold_304079.1 1790 0.0
Ahg491085 jgi|Araly1|491085|fgenesh2_kg.7__518__AT4G35620.1 837 0.0
> Ahg931622 jgi|Araly1|931622|scaffold_304079.1
Length=1325
Score = 1790 bits (969), Expect = 0.0
Identities = 1184/1285 (92%), Gaps = 25/1285 (2%)
Strand=Plus/Plus
Query 96 AACCCACTTCAACGACGATTCTTCAAGATGAAACAAGAAGTAGAAAATTCGGACAAGAGA 155
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 AACCCAC-T--ACAACGATTCTTCAAGATGAAACAAGAAGTAGAAAATTCGGACAAGAGA 94
Query 156 TGAAGAGGGAGAAGAGAAGAGTGTTGCGTGTGATTAACCAGAATCTCGCTGGTGCAAGAG 215
|||||| |||||||||||||||||| |||||||||| |||||||| | |||||||| ||
Sbjct 95 TGAAGAAAGAGAAGAGAAGAGTGTTGGGTGTGATTAATCAGAATCTTGTTGGTGCAAAAG 154
Query 216 TTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTG---TCTAATaagcaagaagaag 272
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 155 TTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTGTTATCTAATAAGC---AAGAAG 211
Query 273 aagaaggatgtcaaaagaagaagTTTGATTCTTTGCGTCCTTCAGTTACAAGATCTGGAG 332
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 212 AAGAAGGATGTCAAGAGAAGAAGTTTGATTCTTTGCGTCCTTCAATTACAAGATCTGGAG 271
Query 333 TTGAGGAAGAGACTAACAAGAAGCTGAAGCCCTCAGTTCC-A--AGTGCTAACGACTTCG 389
|||| || |||||||| |||||||||||||| || ||||| | ||||| || | ||||
Sbjct 272 TTGAAGAGGAGACTAAGAAGAAGCTGAAGCCATCTGTTCCAAGTAGTGCAAATGGTTTCG 331
Query 390 GTGATTGTATATTTATTGATGAGGAGGAAGCTACATTGGACCTTCCAATGCCAATGTCGC 449
|||| ||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 332 GTGACTGTATATTTGTTGATGAAGAGGAAGCTACATTGGACCATCCGATGCCAATGTCGC 391
Query 450 TT--GA----G---A-AACCATACATTGAAGCTGATCCAATGGAAGAAGTTGAGATGGAG 499
|| || | | || ||| |||||||||||| |||||||| |||||||||||||||
Sbjct 392 TTGAGAGGCCGTTCACAAGCAT-CATTGAAGCTGACCCAATGGAGGAAGTTGAGATGGAG 450
Query 500 GATGTAACAGTGGAAGAACCGATCGTGGATATCGATGTCTTAGACT-CGAAGAACTCGCT 558
|||||||||||||||||||| ||| ||||||||||||||| ||| | |||||||||| ||
Sbjct 451 GATGTAACAGTGGAAGAACCAATCTTGGATATCGATGTCTCAGA-TGCGAAGAACTCACT 509
Query 559 TGCGGCTGTTGAATATGTTCAAGATCTTTACGCATTTTACAGAACAATGGAGAGATTTAG 618
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 510 TGCAGCTGTTGAATATGTCCAAGATCTTTACGCATTTTACAGAACAATGGAGAGCTTTAG 569
Query 619 TTGTGTTCCAGTAGACTATATGATGCAACAAATCGACTTAAACGAGAAGATGAGAGCAAT 678
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 570 TTGTGTTCCAGTAGATTATATGATGCAACAAATAGACTTAAACGAGAAGATGAGAGCAAT 629
Query 679 ACTAATCGACTGGTTAATCGAGGTACATGACAAGTTTGATCTGATAAACGAGACACTGTT 738
|||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 630 ACTAATTGACTGGTTAATCGAGGTGCATGATAAGTTTGATCTGATGAACGAGACACTGTT 689
Query 739 TCTGACAGTGAATCTGATAGATAGATTCTTGTCCAAGCAAAATGTTATGAGAAAGAAGCT 798
||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 690 TCTGACAGTCAATCTGATAGATAGATTCTTGGCCAAGCAAGCTGTTATGAGAAAGAAGCT 749
Query 799 TCAGCTTGTAGGGTTAGTAGCTTTGCTGTTAGCTTGTAAGTATGAGGAGGTTTCGGTTCC 858
|||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||||||
Sbjct 750 TCAGCTTGTAGGGTTAGTGGCTTTGCTCTTAGCTTGCAAGTACGAAGAGGTTTCGGTTCC 809
Query 859 TGTTGTCGAAGATTTAGTACTCATTTCGGACAAAGCGTATACGAGGAACGATGTTCTAGA 918
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 810 TGTTGTCGAAGATTTAGTACTCATTTCAGACAAAGCTTATACGAGGAACGATGTTCTAGA 869
Query 919 GATGGAGAAAACAATGTTGAGTACTTTGCAATTCAATATCTCGTTACCGACACAATACCC 978
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 870 GATGGAGAAAACAATGTTGAGTACTTTGCAATTCAATATCTCGTTGCCGACACAATACCC 929
Query 979 GTTCTTGAAAAGATTCCTCAAGGCAGCTCAAGCAGACAAGAAGTGTGAGGTCTTGGCGTC 1038
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 930 TTTCTTGAAAAGATTTCTCAAGGCAGCTCAAGCAGACAAGAAGTGTGAGGTCTTGGCATC 989
Query 1039 GTTCTTGATCGAGCTTGCCCTTGTGGAGTACGAGATGCTTCGGTTTCCACCATCATTACT 1098
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 990 GTTCTTGATCGAGCTTGCGCTTGTGGAGTATGAGATGCTTCGGTTTCCACCATCATTACT 1049
Query 1099 AGCTGCCACATCTGTGTACACTGCTCAATGTACACTTGATGGTTCCAGGAAATGGAACAG 1158
||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 1050 AGCTGCCACATCTGTGTACACTGCTCAATGTACACTTCATGGTTTCAGGCAATGGAACAG 1109
Query 1159 TACATGTGAATTCCATTGTCATTACTCTGAAGACCAGCTCATGGAATGTTCACGGAAGCT 1218
||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 1110 TACATGTGAATTCTATTGTCATTACTCTGAAGATCAGCTCATGGAATGTTTGCGGAAACT 1169
Query 1219 GGTGAGTCTGCATCAGAGGGCGGCGACAGGAAACTTAACAGGAGTATATAGGAAGTACAG 1278
||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1170 GGTGAGTCTTCATCAGAGGGCGGCGACAGGGAACTTGACAGGAGTATATAGGAAGTACAA 1229
Query 1279 CACAAGCAAATTTGGTTACATAGCAAAATGTGAAGCTGCACACTTTCTAGTGTCTGAGTC 1338
|||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1230 CACATCCAAATTTGGGTACATAGCAAAATGTGAAGCTGCACACTTTCTATTGTCTGAGTC 1289
Query 1339 TCATCATTCTTAATCCAAAAGGACA 1363
||||||| ||||| ||||||| |||
Sbjct 1290 TCATCATCCTTAAGCCAAAAGAACA 1314
> Ahg491085 jgi|Araly1|491085|fgenesh2_kg.7__518__AT4G35620.1
Length=1557
Score = 837 bits (453), Expect = 0.0
Identities = 1033/1298 (80%), Gaps = 99/1298 (8%)
Strand=Plus/Plus
Query 95 AAACCCACTTCAAC-GACGATTCTTCAAGATGA--A-ACAAGAAGTAGAAAATTCGGACA 150
||||||| || || || ||||||||||||||| | || ||||| ||||||||||||
Sbjct 147 AAACCCA-TT--ACAGA-GATTCTTCAAGATGATGATACGAGAAGCAGAAAATTCGGATT 202
Query 151 AGAGATGAAGAGGGAGAAGAGAAGAGTGTTGCGTGTGATTAACCAGAATCTCGCTGGTGC 210
|||| ||||||| |||| ||||||| ||| |||||||||| |||||||||| |||| |
Sbjct 203 AGAGGTGAAGAGACAGAACAGAAGAGCATTGGGTGTGATTAATCAGAATCTCGTTGGTTC 262
Query 211 -AAGAGTTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTGTCTAATaagcaagaag 269
|| || ||||||||| ||||| ||||||||| || ||||| || | || ||||
Sbjct 263 TAA-AGCTTATCCTTGCGTTGTTAACAAGAGAAGAGGCTTA---TC---TGAG--AGAA- 312
Query 270 aagaagaaggatgtcaaaagaagaagTTTGATTCTTTGCGTCCTTCAGTTACAAGATCTG 329
|| ||||| | ||| | ||||||||| ||||||| || | ||| ||| || |||||||
Sbjct 313 AACAAGAAAGCTGTGAGAAGAAGAAGCTTGATTCATTACATCCGTCAATTGCAAGATC-- 370
Query 330 GAGTTGAGGAAGAGACTAACAAGAAGCTGAAGCCCTCAGTTCCAAGTGCTAACGACTTCG 389
| ||||||||||| ||||||||||| | ||||||| ||||| || |
Sbjct 371 ----TCAGGAAGAGACT---AAGAAGCTGAA------A---CCAAGTGGGAACGAGTTTG 414
Query 390 GTGATTGTATATTTATTGAT---------GAG--G-A-G--GAAGCTACATTGGACCTTC 434
||||||||||||| |||||| ||| | | | |||||||||||||||| |
Sbjct 415 GTGATTGTATATTCATTGATGAAGAAGAAGAGAAGAATGAAGAAGCTACATTGGACCAAC 474
Query 435 CAATGCCAATGTCGCTT-GAGAAACCATACATTGAAGCTGATCCAAT---GGAAGAAGTT 490
| ||||||||||| || ||||||||||||| |||| | |||||||| ||||||||||
Sbjct 475 CTATGCCAATGTC-ATTGGAGAAACCATACAATGAATCCGATCCAATGGAGGAAGAAGTT 533
Query 491 GAGATGGAGG--AT-G--TAA-CAG-TG--GAAGAACCGATCGTGGATATCGATGTCTTA 541
|||||||||| || | || || | |||||||| || |||||||||| | ||
Sbjct 534 GAGATGGAGGATATAGAAGAAGAAGAAGAAGAAGAACCAATTTTGGATATCGACG-AATA 592
Query 542 -GACT-CGAAGAACTCGCTTGCGGCTGTTGAATATGTTCA-AGATCTTTACGCATTTTAC 598
|| | | || ||||| ||||| | ||||||||||| ||| |||||||||| ||| |||
Sbjct 593 CGA-TGCAAACAACTCTCTTGCAGTTGTTGAATATG-TCAGTGATCTTTACGAATTCTAC 650
Query 599 AG-AACAATGGAGAGATTTAGTTGTGTTCCAGTAGACTATATGATGCAACAAATCGACTT 657
| || || ||||||||||| |||||||| |||| |||||| |||||| | || |
Sbjct 651 CGTAA-AACCGAGAGATTTAGCTGTGTTCCTCTAGATTATATGGCGCAACAGTTTGA--T 707
Query 658 A-AAC-GAGAAGATGAGAGCAATACTAATCGACTGGTTAATCGAGGTACATGACAAGTTT 715
| ||| || || |||||||||||||| ||||| ||| | || |||||||||||||| |||
Sbjct 708 ATAACTGATAAAATGAGAGCAATACTTATCGATTGGCTCATAGAGGTACATGACAAATTT 767
Query 716 GATCTGATAAACGAGACACTGTTTCTGACAGTGAATCTGATAGATAGATTCTTGTCCAAG 775
|| || || ||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 768 GAGCTAATGAACGAGACATTGTTTCTAACAGTGAATCTGATAGATAGATTCCTGTCCAAG 827
Query 776 CAAAATGTTATGAGAAAGAAGCTTCAGCTTGTAGGGTTAGTAGCTTTGCTGTTAGCTTGT 835
||| |||| |||||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct 828 CAAGCTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCTTGC 887
Query 836 AAGTATGAGGAGGTTTCGGTTCCTGTTGTCGAAGATTTAGTACTCATTTCGGACAAAGCG 895
||||| || |||||||| || ||| |||| |||||||| ||| ||||||||||||||||
Sbjct 888 AAGTACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAAGCT 947
Query 896 TATACGAGGAACGATGTTCTAGAGATGGAGAAAACAATG-TTGAGTACTTTGCAATTCAA 954
|||| ||||||||| ||| |||| |||||||| | ||| || |||||||||||||||||
Sbjct 948 TATATGAGGAACGAAGTTTTAGAAATGGAGAAGATTATGCTT-AGTACTTTGCAATTCAA 1006
Query 955 TATCTCGTTACCGACACAATACCCGTTCTTGAAAAGATTCCTCAAGGCAGCTCAAGCAGA 1014
||| |||||||| || |||||||| |||||||| || |||||||||||||||||| ||||
Sbjct 1007 TATGTCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCAGA 1066
Query 1015 CAAGAAG-TGTGAGGTCTTGGCGTCGTTCTTGATCGAGCTTGCCCTTGTGGAGTACGAGA 1073
||||||| | |||| |||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 1067 CAAGAAGCT-TGAGATCTTGGCGTCGTTCTTGATCGAGCTTGCTCTTGTGGACTACGAAA 1125
Query 1074 TGCTTCGGTTTCCACCATCATTACTAGCTGCCACAT-CTGTGTACACTGCTCAATGTACA 1132
|| |||||| ||||||||| || ||||| ||||| | | |||||||| ||||||||||||
Sbjct 1126 TGGTTCGGTATCCACCATCGTTGCTAGCCGCCAC-TGCAGTGTACACAGCTCAATGTACA 1184
Query 1133 CTTGATGG-TTCCAG-GAAATGGAACAGTACATGTGAATTCCATTGTCATTACTCTGAAG 1190
| |||| ||| || ||| |||||||| || ||||||||||| |||| |||||||||
Sbjct 1185 ATCCATGGCTTC-AGTGAA-TGGAACAGCACTTGTGAATTCCACAGTCACTACTCTGAAA 1242
Query 1191 ACCAGCTCATGGAATGTTC-ACGGAAGC-TGGTGAGTCTGCATCAGAGGGC-GGCGACAG 1247
| || ||||| ||||||| | | ||| ||||||| || ||||||| ||| || ||| |
Sbjct 1243 ATCAACTCATAGAATGTTGTA-G-AAGAATGGTGAGACTACATCAGAAGGCTGG-GACTG 1299
Query 1248 G-AAACTTAACAGGAGTATATAGGAAGTACAGCACAAGCAAATTTGGTTACATAGCAA-A 1305
||||| ||||||| || |||| || |||||| | |||||| || |||||||||| |
Sbjct 1300 ATAAACT-AACAGGAATACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACA 1358
Query 1306 ATGT--GAAGCTGCACACTTTCTAGTGTCTGAGTCTCA 1341
| || ||||||||||||||||| ||||| || |||||
Sbjct 1359 AAGTATGAAGCTGCACACTTTCTTGTGTCAGATTCTCA 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5