BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17630.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931623 jgi|Araly1|931623|scaffold_304080.1 2052 0.0
Ahg491084 jgi|Araly1|491084|fgenesh2_kg.7__517__AT4G35630.1 1254 0.0
> Ahg931623 jgi|Araly1|931623|scaffold_304080.1
Length=1305
Score = 2052 bits (1111), Expect = 0.0
Identities = 1246/1311 (95%), Gaps = 9/1311 (1%)
Strand=Plus/Plus
Query 34 ttCCTCAAGATCAACGATAATGGCGGCGTCAACGAACTCATTCCTCATCGGAAACCAAAC 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TTCCTCAAGATCAACGATAATGGCGGCGTCAACGAACTCATTCCTCATCGGAAACCAAAC 62
Query 94 CCAAATCCCTTCTTTGAAACCCAAATCAATATCCCAATCCTTTATCCACTTCACTAAACC 153
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 63 CCAAATCCCTTCCCTGAAACCCAAATCAATTTCCCAATCCTTTATCCACTTCACCAAACC 122
Query 154 CAACACCATCAACCTCACCACCCGAACCAAATCCGTTTCAATCCGATGCGCTTCCGCTTC 213
||||||||||||||||||||| |||||| |||| ||||||| |||| | ||||||
Sbjct 123 TAACACCATCAACCTCACCACCAGAACCACATCCATTTCAATTCGAT--G----CGCTTC 176
Query 214 AACCACCGTCGGATCCGAGCAGCGAGTCATCAATTTCGCCGCAGGTCCAGCCGCATTACC 273
||||||||| | ||||||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 177 AACCACCGTAGAATCCGAGCAACGAGTCTTCAATTTCGCCGCCGGTCCAGCCGCATTACC 236
Query 274 GGAAAACGTCCTCCTCAAAGCTCAATCAGATCTCTATAACTGGCGTGGATCTGGTATGAG 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGAAAACGTCCTCCTCAAAGCTCAATCAGATCTCTATAACTGGCGTGGATCTGGTATGAG 296
Query 334 TGTTATGGAGATGAGTCATCGCGGTAAAGAGTTTCTCTCAATCATTCAAAAAGCTGAATC 393
||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 297 TGTCATGGAGATGAGTCACCGTGGTAAAGAGTTTCTCTCAATCATACAAAAAGCTGAATC 356
Query 394 TGATCTCCGTCAGCTTCTCGAGATTCCATCGGAATATTCCGTTTTGTTCTTACAAGGTGG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 TGATCTCCGTCAGCTTCTCGAGATTCCATCGGAATATTCCGTTTTGTTCTTACAAGGCGG 416
Query 454 TGCCACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGTAAATCTGATGATTCCGTTGA 513
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 417 TGCCACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGCAAATCTGATGATTCTGTTGA 476
Query 514 TTACATTGTTACTGGATCTTGGGGAGATAAAGCTTTTAAGGAAGCTAAGAAATATTGTAA 573
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 TTACGTTGTTACTGGATCTTGGGGAGATAAAGCTTTTAAGGAAGCGAAGAAATATTGTAA 536
Query 574 CCCTAAAGTGATTTGGTCTGGTAAATCTGAGAAATATACTAAAGTTCCAACCTTTGATGG 633
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 537 CCCTAAAGTGATTTGGTCTGGTAAATCTGAGAAATATACTAAAGTTCCATCCTTTGATGG 596
Query 634 ATTGGAGCAGAGTTCGGACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCATGG 693
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATTGGAGCAGACTTCGCACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCATGG 656
Query 694 TGTTGAATTTAAAGATTATCCTCTTGTTGAAAACCCTGATGGTGTTCTTATTGCTGATAT 753
||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 657 TGTTGAATTCAAAGATTATCCTGTTGTTAAAAACCCTGATGGTATTCTTATTGCTGATAT 716
Query 754 GTCTTCGAATTTCTGTTCTAAGCCGGTGGATGTATCGAAGTTCGGTGTGATTTACGCTGG 813
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 GTCTTCCAATTTCTGTTCGAAGCCGGTGGATGTATCGAAATTCGGTGTGATTTACGCTGG 776
Query 814 TGCTCAGAAGAATGTTGGTCCTTCTGGTGTCACCATTGTGATCATTCGAAAGGATTTGAT 873
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 TGCGCAGAAGAATGTTGGTCCTTCTGGTGTCACCATTGTGATAATTCGAAAGGATTTGAT 836
Query 874 TGGGAATGCTAGAGATATAACTCCGGTGATGCTTGATTACAAGATTCATGATGAGAACAG 933
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGGAACGCTAGAGATATTACTCCGGTGATGCTTGATTACAAGATTCATGATGAGAACAG 896
Query 934 CTCGTTGTATAACACGCCACCGTGTTTCGGGATTTATATGTGTGGTCTTGTGTTTGATGA 993
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 897 TTCGTTGTATAACACGCCACCGTGTTTCGGGATTTACATGTGTGGTCTTGTGTTTGATGA 956
Query 994 TTTGTTGGAGCAAGGTGGTTTGAAGGAAGTGGAGAAGAAGAACCAGAGGAAAGCTGA-GT 1052
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | ||
Sbjct 957 TTTGTTGGAGCAAGGTGGGTTGAAGGAAGTGGAGAAGAAGAATCAGAGGAAAGCT-ATGT 1015
Query 1053 TGTTGTACAATGCGATTGATGAGAGTAGAGGGTTTTTCAGGTGTCCTGTTGAGAAGTCTG 1112
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1016 TGTTGTACAATGCAATTGATGAGAGTAGAGGTTTTTTCAGGTGTCCTGTTGAGAAATCTG 1075
Query 1113 TGAGGTCTTTGATGAATGTTCCTTTTACGTTGGAGAAATCGGAGTTGGAAGCTGAGTTTA 1172
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1076 TGAGGTCTTTGATGAATGTTCCTTTTACGTTGGAGAAATCGGAATTGGAAGCTGAGTTTA 1135
Query 1173 TTAAAGAAGCTGCTAAGGAGAAGATGGTGCAGCTTAAGGGACATAGATCAGTGGGAGGTA 1232
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1136 TTAAAGAAGCTGCTAAGGAGAAGATGGTGCAGCTCAAGGGACATAGATCAGTGGGAGGTA 1195
Query 1233 TGAGAGCTTCTATTTACAATGCGATGCCATTGGCTGGTGTCGAAAAGCTTGTTGCTTTCA 1292
|||||||||||||||||||||| ||||| ||||| || || || ||||| ||||||||||
Sbjct 1196 TGAGAGCTTCTATTTACAATGCAATGCCGTTGGCCGGCGTTGAGAAGCTAGTTGCTTTCA 1255
Query 1293 TGAAAGATTTTCAGGCAAGGCATGCTTGATTCTTTTTTGTTTTCTAGTCAT 1343
||||||||||||||||| ||||||||||||||||||| | ||||| |||||
Sbjct 1256 TGAAAGATTTTCAGGCACGGCATGCTTGATTCTTTTT-GCTTTCTGGTCAT 1305
> Ahg491084 jgi|Araly1|491084|fgenesh2_kg.7__517__AT4G35630.1
Length=1657
Score = 1254 bits (679), Expect = 0.0
Identities = 1036/1204 (86%), Gaps = 42/1204 (3%)
Strand=Plus/Plus
Query 219 CCGTCGGAT-CCGAGCAGCGAGTCATCAATTTCGCCGCAGGTCCAGCCGCATTACCGGAA 277
||||||||| || || | || || | || ||||| || ||||||||| | ||||| ||
Sbjct 343 CCGTCGGATCCCAAG-AACGGGTTTTTAACTTCGCGGCGGGTCCAGCCACTTTACCTGAG 401
Query 278 AACGTCCTCCTCAAAGCTCAATCAGATCTCTATAACTGGCGTGGATCTGGTATGAGTGTT 337
||||| ||||| |||||||| | ||||| || ||||||||||||||||| ||||||||
Sbjct 402 AACGTTCTCCTAAAAGCTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTG 461
Query 338 ATGGAGATGAGTCATC-GCGGTAAAGAGTTTCTCTCAATCATTCAAAAAGCTGAATCTGA 396
|||||||||||||| | | || |||||||||||||| || || |||||||||||||| ||
Sbjct 462 ATGGAGATGAGTCA-CAGAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGA 520
Query 397 TCTCCGTCAGCTTC-TCGAGATTCCATC-GGAATATTCCGTTTTGTTCTTACAAGGTGGT 454
||| ||||||| || | |||||||| || |||||||||||||||||||||||||||||||
Sbjct 521 TCTTCGTCAGC-TCTTAGAGATTCC-TCAGGAATATTCCGTTTTGTTCTTACAAGGTGGT 578
Query 455 GCCACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGTAAATCTGATGATTCCGTTGAT 514
|| ||||||||||||||||||||||||||||||||||| ||||| |||||| | || |||
Sbjct 579 GCGACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGAT 638
Query 515 TACATTGTTACTGGATCTTGGGGAGATAAAGCTTTTAAGGAAGCTAAGAAATATTGTAAC 574
| | |||||||||| || ||||||||||||||| | |||||||| ||||| ||||| ||
Sbjct 639 TTCGTTGTTACTGGTTCGTGGGGAGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAG 698
Query 575 CCTAAAGTGATTTGGTCTGGTAAATCTGAGAAATATACTAAA-GTTCCAACCTTTGATGG 633
| || |||||||||||||| |||||||||||||| || ||| |||||| | ||||| ||
Sbjct 699 ACGAATGTGATTTGGTCTGGGAAATCTGAGAAATACAC-AAAGGTTCCATCTTTTGA-GG 756
Query 634 A-TTGGAGCAGAGTTC-GGACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCAT 691
| |||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 AGTTGGAGCA-AACTCTTGACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCAT 815
Query 692 GGTGTTGAATTTAAAGATTATCCTCTTGTTGAAAACCCTGATGGTGTTCTTA-TTGCTGA 750
|| ||||| ||||||||||| ||| || | ||||||||||||| |||||| |||||||
Sbjct 816 GGAGTTGAGTTTAAAGATTACCCTGTTCCTAAAAACCCTGATGG-GTTCTTGGTTGCTGA 874
Query 751 TATGTCTTCGAATTTCTGTTCTAAGCCGGTGGATGTATCGAAGTTCGGTGTGATTTACGC 810
||||||||| || |||||||| || || || |||||||| ||||| |||||||||||||
Sbjct 875 TATGTCTTCTAACTTCTGTTCGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGG 934
Query 811 TGGTGCTCAGAAGAATGTTGGTCCTTCTGGTGTCACCATTGTGATCATTCG-AAAGGATT 869
|||||| |||||||| |||||||| ||||||||||| |||||||||||||| |||| |||
Sbjct 935 TGGTGCACAGAAGAACGTTGGTCCATCTGGTGTCACAATTGTGATCATTCGTAAAG-ATT 993
Query 870 TGATTGGGAATGCTAGAGATATAACTCCGGTGATGCTTGATTACAAGATTCATGATGAGA 929
||||||| || ||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 994 TGATTGGAAACGCTCGAGATATCACTCCTGTGATGCTTGATTACAAGATTCATGATGAGA 1053
Query 930 ACAGCTCGTTGTATAACACGCCACCGTG-TTTCGGGATTTATATGTGTGGTCTTGTGTTT 988
|||| ||| |||| |||||||| || || ||| |||||||| ||||||||||||||||||
Sbjct 1054 ACAGTTCGCTGTACAACACGCCTCCTTGCTTT-GGGATTTACATGTGTGGTCTTGTGTTT 1112
Query 989 GATGATTTGTTGGAGCAAGGTGGTTTGAAGGAAGTGGAGAAGAAGAACCAGAGGAAAGCT 1048
|| ||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1113 GAAGATCTGTTGGAGCAAGGTGGATTGAAAGAAGTGGAGAAGAAGAATCAGAGGAAAGCT 1172
Query 1049 GAGTTG-TTGTACAATGCGATTGATGAGAGTAGAGGGTTTTTCAGGTGTCCTGTTGAGAA 1107
|| ||| || |||||||| ||||| || || | ||| |||||||||||||||||||||||
Sbjct 1173 GATTTGCTT-TACAATGCCATTGAAGAAAGCAAAGGCTTTTTCAGGTGTCCTGTTGAGAA 1231
Query 1108 GTCTGTGAGGTCTTTGATGAATGTTCCTTTTACGTTGGAGAAATCGGAGTTGGAAGCTGA 1167
|| |||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||
Sbjct 1232 ATCAGTGAGGTCGTTGATGAATGTGCCTTTTACATTGGAGAAATCTGAATTGGAAGCTGA 1291
Query 1168 GTTTATTAAAGAAGCTGCTAAGGAGAAGATGGTGCAGCTTAA-GGGACATAGATCAGTGG 1226
|||||| || ||||||||||| ||||||||||||||||| || ||| |||||||||||||
Sbjct 1292 GTTTATCAAGGAAGCTGCTAAAGAGAAGATGGTGCAGCTCAAAGGG-CATAGATCAGTGG 1350
Query 1227 GAGGTATGAGAGCTTCTATTTACAATGCGATGCCATTGGCTGGTGTCGAAAAGCTTGTTG 1286
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1351 GAGGTATGAGAGCTTCTATTTACAATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTG 1410
Query 1287 CTTTCATGAAAGATTTTCAGGC-AAGGCATGCTT-GATTCT-----TTTTTGT-TTTCTA 1338
|||||||||||||||| ||||| ||| ||||||| | || | |||||| ||| |
Sbjct 1411 CTTTCATGAAAGATTTCCAGGCTAAG-CATGCTTAGTTT-TAAGGGTTTTTGCATTT-TG 1467
Query 1339 GTCATCTT-GTTGTTT-ATTATGTAAGCTTTGATGCTTATGATTTTGAGTTTTCGTTCCT 1396
|| || || |||| | || || ||||||| | ||||||||||| | |||||| ||| |
Sbjct 1468 GTTATGTTTGTTGGGTGATGAT--AAGCTTTAAAGCTTATGATTT-G-GTTTTCTTTC-T 1522
Query 1397 TCTT 1400
||||
Sbjct 1523 TCTT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5