BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17640.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480656 jgi|Araly1|480656|fgenesh2_kg.3__3357__AT2G17640.1 1722 0.0
> Ahg480656 jgi|Araly1|480656|fgenesh2_kg.3__3357__AT2G17640.1
Length=1271
Score = 1722 bits (932), Expect = 0.0
Identities = 1066/1130 (94%), Gaps = 11/1130 (1%)
Strand=Plus/Plus
Query 154 TCAAAGTTTCT-CATCATATCCATTAAAGTAGCCTCCTTTTTGCTTTCTCCGTCTCTCTC 212
||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 95 TCAAAGTTT-TGCATAATATCCATTAAAGTAGCCTCCTTTTTGCTTTCTCCG----TCTC 149
Query 213 TCTTTTGTCCAATCAAAAAGAGTTTGTGATTCTTCTTTATCGTCTCCTTGGAGAGATATG 272
|||||||||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||
Sbjct 150 TCTTTTGTCCAATC-AAAAGAGTTTGTGATTCTTCTTCATCGTCTTCTT-G-GAGATATG 206
Query 273 AATGGCGATGAGCTTCCTTTCGAGAGTGGTTTCGAGGTTTACGCTAAGGGAACTCATAAG 332
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 207 AACGGCGATGAGCTTCCTTTCGAGAGGGGTTTCGAGGTTTACGCTAAGGGAACGCATAAG 266
Query 333 TCAGAGTTTGACTCGAATTTGCTTGATCCTCGTTCTGATCCTATTTGGGATGCTATAAGA 392
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 267 TCAGAGTTTGACTCGAATTTGCTTGATTCTCGTTCTGATCCTATTTGGGATGCTATAAGA 326
Query 393 GAAGAAGCTAAACTTGAGGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGT 452
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GAAGAAGCTAAGCTTGAGGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGT 386
Query 453 ATCTTAGCACATGATTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCCAA 512
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 ATCTTGGCACATGACTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCCAA 446
Query 513 AACCCAACCTTGTTGGCAACACAACTCTTGGATATATTTTATGGTGTTATGATGCATGAC 572
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 447 AACCCAACCTTGTTGGCAACTCAACTTTTGGACATATTTTATGGTGTTATGATGCATGAC 506
Query 573 AAAGGTATTCAGAGTTCGATTCGCCATGATCTCCAGGCATTTAAAGATCGTGATCCTGCT 632
||| |||||||||||||||||||||||||| | |||||||||||||| || |||||||||
Sbjct 507 AAAAGTATTCAGAGTTCGATTCGCCATGATATTCAGGCATTTAAAGACCGGGATCCTGCT 566
Query 633 TGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGGGTTATCATGCGTTACAAGCATAT 692
||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 567 TGTCTCTCGTATAGTTCTGCTATTTTACATCTGAAGGGGTATCACGCGTTGCAAGCATAC 626
Query 693 AGGGTTGCGCATAAACTGTGGAATGAAGGGAGGAAACTATTAGCTCTTGCATTGCAAAGC 752
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 627 AGGGTTGCGCATAAACTGTGGAATGAAGGGCGGAAACTATTAGCTCTTGCATTGCAAAGC 686
Query 753 CGAATAAGCGAGGTTTTTGGCATTGACATACATCCAGCGGCAAGAATTGGGGAGGGAATA 812
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 687 CGAATAAGCGAGGTTTTTGGAATCGACATTCATCCAGCGGCAAGAATTGGGGAGGGAATA 746
Query 813 TTGTTGGATCATGGAACTGGAGTGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTC 872
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 747 TTGTTGGATCATGGAACTGGAGTGGTCATCGGTGAGACCGCTGTGATAGGAAACGGTGTC 806
Query 873 TCGATCTTACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGCGATCGCCACCCA 932
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 807 TCGATCTTACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGTGATCGTCACCCA 866
Query 933 AAGATAGGTGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGTAACATAAGCATA 992
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 867 AAAATAGGTGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGGAACATAAGTATA 926
Query 993 GGTGCTGGAGCAATGGTAGCTGCAGGTTCACTTGTGTTAAAAGACGTTCCTTCGCATAGT 1052
|||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||
Sbjct 927 GGTGCTGGGGCAATGGTAGCCGCGGGTTCACTTGTATTAAAGGACGTTCCTTCGCATAGT 986
Query 1053 GTGGTGGCTGGAAATCCTGCAAAACTGATCAGGGTCATGGAAGAGCAAGACCCGTCTCTA 1112
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 987 GTGGTGGCTGGAAATCCTGCGAAACTGATCAGGGTCATGGAAGAGCAAGACCCATCTCTA 1046
Query 1113 GCAATGAAACACGATGCTACTAAAGAGTTCTTTCGACATGTAGCTGATGGTTACAAAGGG 1172
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1047 GCAATGAAACACGATGCTACTAAAGAGTTCTTTCGGCATGTAGCTGATGGTTACAGAGGG 1106
Query 1173 GCACAATCTAACGGACCATCACTTTCAGCAGGAGATACAGAGAAAGGACACACTAACAGC 1232
||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 1107 GCACATTCTAATGGACCATCAGTTTCAGGAGGAGATACAGAGAAAGGACACACTAACTGC 1166
Query 1233 ACATCATGAGATCTTTGTATGCAAATTT-CTTACCATCATAAGCTAATTC 1281
| ||||||||||| |||||||| | ||| |||| |||||||||| |||||
Sbjct 1167 AAATCATGAGATCCTTGTATGCGA-TTTGCTTATCATCATAAGCCAATTC 1215
Score = 152 bits (82), Expect = 6e-36
Identities = 91/95 (96%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 28 GTAGAACCATTCAAAGCGGTGGACACTGGaacacaacacaaacacaagatcaacgagaaa 87
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GTAGAACCATTCAAAGCGGTGGACACTGGAACACAACAC-AACACAAGATCAACGAGAAA 59
Query 88 ccaaacaacaacaGCGACCATCGAGAGAATCCACT 122
||||||| ||||| |||||||| ||||||||||||
Sbjct 60 CCAAACATCAACAACGACCATCAAGAGAATCCACT 94
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5