BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17650.1
Length=1937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480657 jgi|Araly1|480657|fgenesh2_kg.3__3358__AT2G17650.1 2820 0.0
> Ahg480657 jgi|Araly1|480657|fgenesh2_kg.3__3358__AT2G17650.1
Length=1897
Score = 2820 bits (1527), Expect = 0.0
Identities = 1797/1924 (93%), Gaps = 31/1924 (2%)
Strand=Plus/Plus
Query 7 CCAAATCAAAGTGTTAACCATGAGATTCTTGTTAACCAAAAGAGCATTCAGAATCTTCAA 66
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 1 CCAAATCAAAGTGTTAACCATGAGATTCTTGTTATCCAAAAGAGCATTCAAAATCTTC-A 59
Query 67 C-CCACGTTTCCAGAGACTGTGGTTAACTTCTTCTCCCTTCTCCTCAACCTCAAATTCCG 125
| |||||||||||||| |||||||| |||| ||||||||||||||||| | ||
Sbjct 60 CTCCACGTTTCCAGAGTCTGTGGTTCACTTATTCTCCCTTCTCCTCAA---C-----CC- 110
Query 126 GCGGATTTCCCGACGATTCCGAGCCGGAATCATGGAGAACTATAGAGGGTCTTCTCCGTT 185
| || ||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 111 -C-GA-ATCCCGGCGATTCCGAGCCGGAATCATGGAGAACTATGGAGGGTCTTCTCCGAT 167
Query 186 CCCCTGCAAATTTCTCTCCTTTATCTCCAATCACGTTCTTGGAGCGATCCGCTAAGGTTT 245
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 168 CCCCTGCAAATTTCTCTCCTTTATCTCCAATCACGTTCTTGGAACGATCCGCAAAAGTTT 227
Query 246 ACAGAGACAGAACCTCTCTTGTGTTTGGTTCCGTTAAACACACTTGGTTCCAAACTTATC 305
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 228 ACAGAGACAGAACCTCTCTTGTGTTTGGTTCCGTTAAACATACTTGGTTCCAAACTTATC 287
Query 306 AACGTTGTCTCCGTCTTGCCTCTGCTCTTACCAATCTCGGAATCTCTCGTGGCGATGTGG 365
||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||
Sbjct 288 AACGTTGTCTCCGTCTTGCTTCTGCTCTTACCCACCTCGGAATTTCTCGTGGCGATGTGG 347
Query 366 TTGCAGCTTTAGCTCCGAATGTTCCAGCTATGCATGAGCTTCATTTCGCTGTTCCTATGG 425
|||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 348 TTGCAGCTTTGGCACCGAATGTTCCAGCAATGCATGAGCTTCATTTCGCTGTTCCAATGG 407
Query 426 CTGGTTTGATTCTTTGTCCGCTTAATACTCGACTTGATCCTTCCACATTGTCGGTTTTGT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CTGGTTTGATTCTTTGTCCGCTTAATACTCGACTTGATCCTTCCACATTGTCGGTTTTGT 467
Query 486 TAGCACACTCCGAGGCCAAAATCCTCTTTGTTGATCATCAGTTACTTGAGATTGCTCATG 545
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 468 TAGCACATTCGGAGGCCAAAATCCTCTTTGTTGATCACCAGTTACTTGAGATTGCTCATG 527
Query 546 GAGCTCTTGATCTTCTTGCTAAATCAGATAAAACTAGAAAAAGTCTGAAGCTTGTGTTGA 605
|||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 528 GAGCTCTTGATCTTCTTGCTAAATCAGATAGAACAAGAAAAAGTTTGAAGCTTGTGTTGA 587
Query 606 TCTCTCAGTCTAATGATGATGATGATAGTGATGAAGATAGCTCATCTACCTTTGCTTCAA 665
||||||||||||||||||||| | | | |||| ||||||||||| |||||| ||||
Sbjct 588 TCTCTCAGTCTAATGATGATG--G-T--T-ATGA---TAGCTCATCTAGCTTTGCGTCAA 638
Query 666 AGTACTCTTTTGATTACGAATATGAAACTCTGCTTAAATCCGGAGATAGC-GAGTTTGAG 724
||||||| |||||||||||||||||||||||||||||||||||| ||| | || || |||
Sbjct 639 AGTACTCGTTTGATTACGAATATGAAACTCTGCTTAAATCCGGAAATA-CTGAATTCGAG 697
Query 725 ATAATCAAACCGAGATGCGAATGGGATCCTATTAGTATAAACTACACTTCAGGGACGACT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 698 ATAATCAAACCGAGATGCGAATGGGATCCTATTAGTATAAACTACACTTCAGGAACGACT 757
Query 785 TCGAGACCTAAGGGTGTAGTGTATAGCCATAGAGGAGCTTATCTCAATTCTCTTGCTACA 844
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TCGAGACCTAAAGGTGTAGTGTATAGCCATAGAGGAGCTTATCTCAATTCTCTTGCTACA 817
Query 845 GTCTTTCTTCACCAGATGTCTGTTTATCCGGTGTATTTATGGACAGTGCCGATGTTTCAC 904
|| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 818 GTTTTTCTTCACCAGATGTCTGTTTATCCAGTTTATTTATGGACTGTGCCGATGTTTCAC 877
Query 905 TGTAACGGATGGTGTCTTGTTTGGGGAGTAGCAGCTCAAGGTGGTACTAATATCTGTCTC 964
|||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 878 TGTAACGGATGGTGCCTTATTTGGGGAGTAGCAGCTCAAGGTGGTACCAATATCTGCCTC 937
Query 965 AGGAAAGTCTCTCCTAAGATGATCTTTAAGAACATTGCTATGCATAAAGTGACTCACATG 1024
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AGGAAAGTCTCTCCTAAGTTGATCTTTAAGAACATTGCTATGCATAAAGTGACTCACATG 997
Query 1025 GGAGGAGCCCCAACTGTGT-TGAATATGATTGTGAACTATACTGTGACTGAACATAAACC 1083
||||||||||| || || | |||| ||||||||||||| | ||||||| |||||||||||
Sbjct 998 GGAGGAGCCCCTACGGT-TCTGAACATGATTGTGAACTCTCCTGTGACCGAACATAAACC 1056
Query 1084 GCTTCCTCACAGGGTTGAGATCATGACAGGTGGGTCACCGCCTCTA-CCGCAGATCCTGG 1142
||| ||||||||||||||||||||||||||||||||||| |||| | || ||||| || |
Sbjct 1057 GCTGCCTCACAGGGTTGAGATCATGACAGGTGGGTCACCACCTC-AGCCACAGATACTCG 1115
Query 1143 CTAAGATGGAAGAATTAGGTTTCAATGTGTCTCATCTTTATGGTTTGACAGAGACATACG 1202
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1116 CAAAGATGGAAGAATTAGGTTTCAATGTGTCTCATCTATACGGTTTGACAGAGACATACG 1175
Query 1203 GTCCAGGGACACATTGCGTGTGGAAACCTGAATGGGATTCACTTTCGTTGGAGGAGAGAA 1262
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1176 GTCCAGGGACACACTGCGTGTGGAAACCTGAATGGGATTCTCTTTCGTTGGAGGAGAGAA 1235
Query 1263 CTAAGTTGAAGGCTAGACAAGGAGTGCAGCATTTGGGTCTAGAAGGGCTCGATGTGAAAG 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CTAAGTTGAAGGCTAGACAAGGAGTGCAGCATTTGGGTCTAGAAGGGCTCGATGTGAAAG 1295
Query 1323 ATCCGCTGACAATGGAGACTGTCCCTGATGATGGTTTAACCATGGGTGAGGTTATGTTCA 1382
||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1296 ATCCGGTGACAATGGAGACTGTCCCTGACGATGGTGTAACCATGGGTGAGGTTATGTTCA 1355
Query 1383 GAGGAAACACTGTGATGAGTGGATATTTCAAGGACATAGAGGCAACACGAAAAGCTTTCG 1442
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1356 GAGGAAACACTGTGATGAGTGGATATTTCAAGGACTTAGAGGCAACACGAAAAGCTTTCG 1415
Query 1443 AGGGAGATTGGTTCCACAGTGGTGATCTCGCTGTTAAGTATCCAGACGGGTACATAGAGA 1502
| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 1416 AAGGAGATTGGTTCCATAGTGGTGATCTCGCTGTTAAGCATCCGGACGGGTACATAGAAA 1475
Query 1503 TAAAAGACCGGTTAAAAGATGTGATCATCTCAGGAGGAGAAAACATAAGCTCAGTGGAGG 1562
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1476 TAAAAGATCGGTTAAAAGATGTGATAATCTCAGGAGGAGAAAACATAAGCTCGGTGGAGG 1535
Query 1563 TTGAGAGAGTTTTGTGCAGCCATCAAGCGGTTCTTGAAGCTGCTGTTGTAGCACGTCCAG 1622
| || || |||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1536 TCGAAAGTGTTTTGTGTAGCCATCAAGCGGTTCTTGAAGCCGCTGTTGTGGCACGTCCGG 1595
Query 1623 ATCATCACTGGGGACAGACTCCTTGCGGTTTTGTAAAGCTGAAAGAAGGATTTGATACCA 1682
|| |||| |||||||||||||||||||| || || ||||||||||| || ||||||||||
Sbjct 1596 ATAATCATTGGGGACAGACTCCTTGCGGGTTCGTGAAGCTGAAAGACGGGTTTGATACCA 1655
Query 1683 TCAAACCCGAGGAGATTATCGGGTTCTGTCGAGATCATTTGCCGCATTACATGGCTCCAA 1742
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1656 TCAAACCCGAGGAGATTATCGGGTTCTGTAGAGATCATTTGCCTCACTACATGGCTCCAA 1715
Query 1743 AGACTATAGTTTTCGGGGACATACCTAAAACCTCGACGGGGAAAGTACAAAAGTATCTTC 1802
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1716 AGACTATTGTTTTTGGGGACATACCTAAAACCTCGACAGGGAAAGTACAAAAATATCTTC 1775
Query 1803 TGAGGAAGAAAGCTGATGAAATGGGTAGCTTGTAATCGCCATGTAAGAAACAAAAAAGCT 1862
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1776 TGAGGAAGAAAGCTGATGAAATGGGCAGCTTGTAATCGCCATGTAAGAAACAAAAAAGCT 1835
Query 1863 TAGTCTCTGGTTCATGTGTGTATGTAAGGAAACAAAGATCAGAGAATCATAAAACCACCG 1922
| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1836 TGGTCTCTAGTTCATGTGTGTAT--AAGGAAACAAAGATCAGAGAATCATAAAACCACCG 1893
Query 1923 CGTG 1926
||||
Sbjct 1894 CGTG 1897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790458195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5