BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17660.1
Length=431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931626 jgi|Araly1|931626|scaffold_304083.1 387 5e-107
> Ahg931626 jgi|Araly1|931626|scaffold_304083.1
Length=251
Score = 387 bits (209), Expect = 5e-107
Identities = 233/245 (95%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 57 TTGTTACTTTCTTGATCGATAATGGCGTCGAATGAAGCTGGAAGGGCATTGCCGAAATTC 116
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1 TTGTTACTTTCTTGATCGAAAATGGCATCGAATGAAGCTGGAAGGGCATTGCCGAAATTC 60
Query 117 GGGGAATGGGATGTGAATGATCCAGCGACGGCGGATGGATTCACGGTGATATTCAGCAAA 176
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 61 GGGGAATGGGATGTGAATGATCCGGCGACAGCGGATGGATTCACGGTGATATTTAGCAAA 120
Query 177 GCCGGTGAAGATAAAAAGACGGGACGGAGTTCGACGAAGACGAATTCACAGAGGAAACAA 236
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 GCCGGTGAAGATAAAAAGACTGGACGGAGTTCGACGAAGACAAATTCTCAGAGGAAACAA 180
Query 237 GATGGTGATAAACCAGCGGTCAAGAAATGGCTCTGTTTCACTTTTGCTTAATCttttttt 296
|| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 181 GACGGTGATAAACCAGCGGTCAAGAAATGGCTCTGTTTCACTTTTACTTGATCTTTTTTT 240
Query 297 tttGT 301
||||
Sbjct 241 ATTGT 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15529324723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5