BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17670.1
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480659 jgi|Araly1|480659|fgenesh2_kg.3__3360__AT2G17670.1 2265 0.0
> Ahg480659 jgi|Araly1|480659|fgenesh2_kg.3__3360__AT2G17670.1
Length=1494
Score = 2265 bits (1226), Expect = 0.0
Identities = 1385/1462 (95%), Gaps = 9/1462 (1%)
Strand=Plus/Plus
Query 65 AAAAAATGGGGAAAGTTCCGTCGTCGTTTCGTAG-TATGCCGGCGAACTTATTGGTCAGA 123
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |
Sbjct 39 AAAAAATGGGGAAAGTTCCATCGTCGTTTCG-CGCTATGCCGGCGAACTTATTGGTCA-A 96
Query 124 AAAA-CAACACCATCTCCTCCAGCGCCGCCGCGAGATTTTCGCAACAGAACCGCCGTGGG 182
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 97 AAAACCAACACCATCTCCTCCAGCGCCGCCGCGTGATTTTCGCAACAGAACCGCCGT--G 154
Query 183 AGGAGATTCAGCCAAACTTCCCCAGAATACTCAAGCCCCTCGCGAGCCCTCCTTGAGGAA 242
| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 155 A-GAGATTCAACTAAACTTCCCGAGAATACTCAAGCCCCTCGCGAGCCCTCCTTGAGGAA 213
Query 243 TCCATTCAAGTCACCAAATCTCTCAGACGCTAAAAGCCTCTTCAATTCAATCGCCGCCAC 302
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 214 CCCTTTCAAGTCACCAAATCTCTCAGACGCCAAAAGTCTCTTCAATTCAATCGCCGCCAC 273
Query 303 TTCACGAATCCCACTCGATCTCAAGTTCCACAACTCTGTTCTTCAATCATACGGTTCAAT 362
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 274 TTCAAGAATCCCACTCGATCTCAAATTCCACAACTCTGTTCTTCAATCCTACGCTTCAAT 333
Query 363 CGCCGTCGTCAACGATACGGTGAAACTCTTTCAGCATATTTTGAAATCGCAGCCTAATTT 422
||||| ||| ||||||||||||| | |||||||||||||||||||| |||||||| ||
Sbjct 334 CGCCGCCGTTGACGATACGGTGAAGTTGTTTCAGCATATTTTGAAATCTCAGCCTAAGTT 393
Query 423 CAGGCCGGGACGTTCAACGTTCCTTATCTTGCTTTCACATGCTTGTAGAGCTCCTGATTC 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CAGGCCGGGACGTTCTACGTTCCTTATCTTGCTTTCACATGCTTGTAGAGCTCCTGATTC 453
Query 483 GTCGATTTCGAATGTTCATAGAGTTCTTAATCTCATGGTTAATAATGGTTTAGAGCCTGA 542
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 454 ATCGATTTCGAATGTTCATAGAGTTCTTAATCTCATGGTGAATAATGGTTTAGAGCCTGA 513
Query 543 TCAAGTAACTACCGATATCGCGGTGAGGTCTCTTTGCGAAACGGGTCGGGTTGATGAAGC 602
||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 514 TCAAGTAACAACCGATATCGCGGTTCGGTCTCTTTGCGAAACCGGTCGGGTTGATGAAGC 573
Query 603 TAAGGATTTGATGAAGGAGCTCACTGAGAAACACTCTCCTCCGGATACATATACTTATAA 662
||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 574 TAAGGATTTGATGAAGGAGCTGACGGAGAAACATTCCCCTCCGGATACATATACTTATAA 633
Query 663 CTTTCTACTGAAGCATTTGTGCAAATGCAAAGATCTTCATGTTGTTTATGAGTTTGTTGA 722
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 634 CTTTCTACTGAAGCATTTGTGCAAATGCAAAGATCTACATGTTGTTTATGAGTTTGTTGA 693
Query 723 TGAGATGAGAGATGATTTCGATGTTAAGCCGGATCTTGTTAGCTTCACTATCTTGATTGA 782
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 694 TGAGATGAGGGATGATTTCGATGTGAAGCCGGACCTTGTTAGCTTCACTATCTTGATTGA 753
Query 783 TAATGTTTGTAACTCTAAGAACTTGAGGGAGGCAATGTATCTAGTTAGTAAGTTAGGTAA 842
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TAATGTGTGTAACTCTAAGAACTTGAGGGAGGCAATGTATCTAGTTAGTAAGTTAGGTAA 813
Query 843 TGCTGGGTTTAAGCCGGATTGTTTCCTCTATAACACGATTATGAAAGGTTTTTGCACACT 902
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 814 TGCTGGGTTTAAGCCGGATTGTTTCCTCTATAACACCATTATGAAAGGTTTTTGCACACT 873
Query 903 GAGTAAAGGGAGTGAGGCGGTTGGTGTGTATAAGAAAATGAAGGAAGAAGGTGTTGAGCC 962
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 874 GAGTAAAGGGAGCGAGGCGGTTGGTGTTTATAAGAAAATGAAGGAAGAAGGTGTTGAGCC 933
Query 963 AGATCAGATTACCTACAATACTTTGATATTTGGACTGTCGAAAGCTGGTAGAGTTGAGGA 1022
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 934 AGATCAGATTACTTACAATACTTTGATATTTGGATTGTCGAAATCTGGTAGAGTTGAGGA 993
Query 1023 AGCTAGGATGTATTTGAAAACTATGGTTGATGCGGGGTATGAGCCGGATACTGCTACTTA 1082
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 994 AGCTAGGATGTACTTGAAAACTATGGTTGATGCGGGTTATGAGCCGGATACTGCCACTTA 1053
Query 1083 CACATCACTGATGAATGGAATGTGTAGAAAAGGTGAGTCTTTAGGTGCGTTGAGTTTGTT 1142
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1054 CACGTCGCTGATGAATGGAATGTGTAGAAAAGGCGAGTCTTTAGGTGCGTTGAGTTTGTT 1113
Query 1143 AGAAGAAATGGAAGCAAGAGGGTGTGCTCCAAATGATTGTACTTATAATACTTTGCTTCA 1202
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1114 AGAAGAAATGGAAGCAAGAGGGTGTGCTCCAAATGATTGCACTTATAATACTTTGCTTCA 1173
Query 1203 TGGATTGTGTAAAGCAAGGTTGATGGATAAAGGGATGGAGTTATATGAAATGATGAAATC 1262
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1174 TGGATTGTGCAAGGCAAGGTTGATGGATAAAGGGATGGAGTTATATGAATTGATGAAATC 1233
Query 1263 AAGTGGTGTAAAGCTTGAGAGTAATGGTTATGCTACACTTGTGAGGTCTCTGGTTAAAAG 1322
||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1234 AAGCGGTGTAAAGCTTGAGACCAATGGTTATGCCACTCTTGTGAGGTCTCTGGTTAAAAG 1293
Query 1323 TGGCAAGGTCGCAGAGGCTTATGAAGTGTTTGATTATGCAGTTGATAGCAAGAGTTTGTC 1382
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1294 TGGCAAGGTCGCAGAGGCTTATGAAGTGTTTGATTATGCAGTTGATAGCAAGAGTTTGAC 1353
Query 1383 AGATGCTTCTGCGTACTCTACACTTGAAACTACCTTGAAATGGTTGAAAAAAGCTAAAGA 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 AGATGCTTCTGCGTACTCTACACTTGAAACTACCTTGAAATGGTTGAAAAAAGCTAAAGA 1413
Query 1443 ACAAGGCTTGGTTC-CATAAATGGTATCCTCTAGCTGAGCTTTACCGACTTTCTTCTTTA 1501
||||||||||||| | ||| ||||||||||||||| |||||| || ||||||||||||
Sbjct 1414 ACAAGGCTTGGTTGTC-TAAGTGGTATCCTCTAGCTAAGCTTTTCCAACTTTCTTCTTTG 1472
Query 1502 TGCAAGTCCATATTTCATTTTT 1523
| | ||||||||||||||||||
Sbjct 1473 TACGAGTCCATATTTCATTTTT 1494
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 6 CAAAAACCTCTGCAAGAACCCTAAAGCTAAAACCTTTT 43
||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAAACCTCTGCAAGAACCCTAAAGCTAAAACCTTTT 38
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67838726345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5