BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17680.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931629 jgi|Araly1|931629|scaffold_304086.1 1386 0.0
Ahg944315 jgi|Araly1|944315|scaffold_700544.1 220 2e-56
Ahg491077 jgi|Araly1|491077|fgenesh2_kg.7__510__AT4G35710.1 163 3e-39
> Ahg931629 jgi|Araly1|931629|scaffold_304086.1
Length=926
Score = 1386 bits (750), Expect = 0.0
Identities = 869/927 (94%), Gaps = 5/927 (1%)
Strand=Plus/Plus
Query 213 AACAACAAAACTCAAACCAATATGGTGATGATGATGATCAAGAACCATGTAAGATCTATA 272
||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 AACAACAAAGCTCAAACCAATATGGCGATGAAGATGATCAAGAACCATGTAAGATCTATT 60
Query 273 AGCTTACAATCAAGATCTCATCCTAGCACAGCAGCGATCGAGGAGTCGCTCGACAAATTT 332
||||||| ||||||||||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 61 AGCTTACCATCAAGATCTCATCCTAGCACCGCAGCGATTGAGGAGTCGCTGGAAAAATTT 120
Query 333 CTTATCACTATGAACACGTCGACAATGGCGTCGTCTGAGTCGGTTCACTCCGGTTTATCG 392
|||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||
Sbjct 121 ATTATCACTATGAACACGTCGACAATGACGTCGTCTAAGTCCGTTTACTCCGGTTTATCG 180
Query 393 GGGTTGGAGGATCTGTACGACTGTTCGGAAGATCTTCTGAAGATGGGTTCGACGCAAAGG 452
||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 181 GGGCTGGAGGATCTGTACGACTGTACCGAAGATCTTCTTAAGATGGGTTCGACGCAAAGA 240
Query 453 GTGTTGTCGTTTAGTGATGagaagaagaagaagaagaGGAA-A-G-TGAAGGGAGAGTTT 509
||||||||||||| ||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 241 GTGTTGTCGTTTAATGATGAGAAGAAGAAGAAGAAGAAGAAGATGATGAAGGGAGAGTTT 300
Query 510 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCGAGGGAT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCGAGGGAT 360
Query 570 CTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGAAGGAAA 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGAAGGAAA 420
Query 630 GATGTCGACGTCTCGGGATATGTCGGGTTTAGGAAAAACATGAGGAAAGAAGTGAAGAAG 689
||| |||| |||||||| |||||||| |||||||| || |||||||||||||||||||||
Sbjct 421 GATTTCGATGTCTCGGGCTATGTCGGATTTAGGAAGAATATGAGGAAAGAAGTGAAGAAG 480
Query 690 CTTCTTGGATCTTTAAAGAACATTAATGTAGGGTTAGTGATGAGAGATCATGGTTATGAT 749
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 481 CTTCTTGGATCGTTAAAGAACATTAATGTAGGGTTAGTAATGAAAGATCATGGTTATGAT 540
Query 750 CAAGACGGTGATATTCATTTCTTGGCCGTGATTCATGCAATGAGACGTGTCGTTT-ATAT 808
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 541 CAAGACGGTGATATTCATTTATTGGCCGTGATTCATGCAATGAGACGTGTCGTTTCA-AT 599
Query 809 GACAGTTTCGGTCTTAAAGTCTTTCTTTGAGTTCTTGTCGGGACGACAAAACGGGAACGA 868
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 600 GACAGTTTCGGTCTTGAAGTCGTTCTTGGAGTTCTTGTCGGGACGACAAAACGGGAATGA 659
Query 869 CGTAAGGAGCAAGTTGGCTTTAGTTCTCATGAACAAGAAGTTTCATGATCACGATAAGAT 928
| |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 660 CATAAGGAGCAAATTGGCTTTGGTCCTCATGAACAAGAAGTTTCATGATCACGATAAGAT 719
Query 929 GGTCAAAAACGAGTTGGAGAATGTAGATTCCGCGATTTGTGGAGATTCTATCTCTCATGA 988
||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 720 GGTCAAAAATGAGTTGGAGAATGTAGATTCAGCGATTTGTGGAGATTCTATCTCTTATGA 779
Query 989 TGATCTTCATGAGAAGCTTGAGGAAGTTGAGGTATGGATTGGAAAATTCGAGAAGAGTCT 1048
||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 780 TGATCTTCATGTGAAGCTTGAGGAAGTTGAGGTATGGATTCGAAGGTTCGAGAAGAGTCT 839
Query 1049 TGAAGGATTGTTTCGAGGGTTGATTAAAACACGAGCCTCGCTTCTCAACATAATCTCTCA 1108
|||| ||| ||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 840 AGAAGAATTATTTCGAGGGATGATTAGAACACGAGCCTTGCTTCTCAACATAATCTCTCA 899
Query 1109 ATAGGTGTTTATGTAATATTGTCATCT 1135
|||||||| ||||||||||||||||||
Sbjct 900 ATAGGTGTATATGTAATATTGTCATCT 926
> Ahg944315 jgi|Araly1|944315|scaffold_700544.1
Length=892
Score = 220 bits (119), Expect = 2e-56
Identities = 491/658 (75%), Gaps = 76/658 (12%)
Strand=Plus/Plus
Query 504 GAGTTTATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCG 563
||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 255 GAGTTCATGGAGGAAATGCTTGACGGTTCGTTGAGGCTAATGGATATATGCAGCGTTTCG 314
Query 564 AGGGATCTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCA-----GTCTT-GT-G- 615
|||||||||||||| |||||||| |||||||||| |||| |||| ||||| | |
Sbjct 315 AGGGATCTCATGGTGGAGACTCACGAGCATGTTCGTGGTGTTCAATCATGTCTTAGGAGA 374
Query 616 ------TTAG--G-AGAAGGA-A--A----GATGTCGACGTCTCGGGATATGTCGGGTTT 659
|||| | || |||| | | ||||| | | ||||||| |||||||| |||
Sbjct 375 AAGAAATTAGCCGGAGGAGGAGACCAACTCGATGTTGCCATCTCGGGGTATGTCGGATTT 434
Query 660 AGGAAA-AACATGAGGAAAGAAG-TGAAGAAGCTTCTTGGATCTTTAAAGAACATTAATG 717
|| ||| |||||||||||||||| | ||||||||||||||||| || ||||||||| |||
Sbjct 435 AG-AAAGAACATGAGGAAAGAAGCT-AAGAAGCTTCTTGGATCCTTGAAGAACATTGATG 492
Query 718 TAGGGTTA-GTG-ATGAGAGATCATGGT---TA-TGATCAAGACGGT-GATATTCAT-TT 769
||| ||| || || ||| ||| || || ||| || | || | ||| ||
Sbjct 493 GAGGATTAAGTTCATCTTT-ATC--GGTAAATAATGGTCA-GAAAGAAGA-A--CATCTT 545
Query 770 CTTGGCCGTGATTCATGCAATGAGACGTGTCGTTTATATGA-CAGTTTCGGTCTTAAAGT 828
| ||| || | ||||||||||| || |||| | | | || ||||| || | ||
Sbjct 546 GT-GGCGGTTACAAATGCAATGAGAAAAGTAGTTTCCGTTAGC-GTCTCGGTGTTGAGGT 603
Query 829 CTTTCTTTG-AGTTCTTGTCGGGACGACAA-AACGGGAACGACGTAAGGAGCAAGTTGGC 886
| || |||| ||||||| | |||| || || || | ||| | |||| |||||| ||||
Sbjct 604 CGTT-TTTGGAGTTCTTATTGGGAAGAAAACAAAGT-AAC-AT-TAAG-AGCAAGCTGGC 658
Query 887 TTTAGTTCTCATGAACAAGAAGTTTCATGATCACGATAAGATGGTCAAAAACGAGTTGGA 946
|| || || | ||| |||||| ||||| || || ||| ||| |||||||||||
Sbjct 659 TTCGGTACTAAAGAAAAAGAAGGTTCATCATGTTGAGGAGAC---CAAGAACGAGTTGGA 715
Query 947 GAATGTAGATTCCGCGATTTG-TGGAGATTCTATCTCTCATGATGATCTTCATGAGAAGC 1005
|| | | ||||| ||||| || || || || | |||||||||||| |||||||
Sbjct 716 GAGTTTGGATTCGGCGATATGCTG------CT--CT-TG-TGATGATCTTCAAGAGAAGC 765
Query 1006 TTGAGGAAGTTGAGGTATG-G-ATTGGAAAA-TTCGAGAAGAGTCTTGAAGGATTGTTTC 1062
||||||| |||||| ||| | || | | |||||||||| ||| ||||| || ||||
Sbjct 766 TTGAGGAGGTTGAG--ATGAGCATCG-ATGGGTTCGAGAAGAATCTAGAAGGGTTATTTC 822
Query 1063 GAGGGTTGATTAA-AACACGAGCCTCGCTTCTCAACATAATCTCTCAATAGGTGTTTA 1119
|| ||||||| || ||||||||||||||||||||||||||| ||||| ||| | ||||
Sbjct 823 GAAGGTTGAT-AAGAACACGAGCCTCGCTTCTCAACATAATATCTCATTAGAT-TTTA 878
> Ahg491077 jgi|Araly1|491077|fgenesh2_kg.7__510__AT4G35710.1
Length=843
Score = 163 bits (88), Expect = 3e-39
Identities = 114/127 (90%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 504 GAGTTTATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCG 563
||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 229 GAGTTCATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATATGCAGCGTCTCA 288
Query 564 AGGGATCTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGA 623
|||||||| ||||| || ||||| |||||||||| |||| ||||||| |||||||| |||
Sbjct 289 AGGGATCTAATGGTGGATACTCACGAGCATGTTCGTGGTGTTCAGTCATGTGTTAGAAGA 348
Query 624 AGGAAAG 630
| |||||
Sbjct 349 AAGAAAG 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5