BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17695.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480662 jgi|Araly1|480662|fgenesh2_kg.3__3363__AT2G17695.1 1184 0.0
Ahg929297 jgi|Araly1|929297|scaffold_301754.1 575 2e-163
> Ahg480662 jgi|Araly1|480662|fgenesh2_kg.3__3363__AT2G17695.1
Length=813
Score = 1184 bits (641), Expect = 0.0
Identities = 718/755 (95%), Gaps = 6/755 (1%)
Strand=Plus/Plus
Query 136 TTTT-TGGGTCTGCTTCAATTGCAGTGGAAGAGATGGTGTTCTTGAGTTGGGGCCGTCCA 194
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 62 TTTTATGGGTCTGCTTCAATTGCTGTGGAAGAGATGGTGTTCTTGAGTTGGGGCCGTCCA 121
Query 195 TCTTCCGAGCAACAGCAACAAGTCATCAACAAAACAGGAACCTTCAATTATGACAACAAG 254
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 122 TCTTCCGAGCAACAGCAACAAGTAATTAACAAAACAGGAACCTTCAATTATGACAACAAG 181
Query 255 TACAGAGGAGTTTCGTCTAGGTCTATTGCTAAACTTAAGGAAGATTCAGAGATTGATAAA 314
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 182 TACAGAGGAGTTTCGTCTAGGTCTATAGCTAAACTTAAGGAAGATTCAGAGGTTGATAAA 241
Query 315 GATGGATTCTTGATCAATCATGCTCGTGTTTTAGTCGGTTCTGGTAGAGAGAGTTAT-GA 373
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||
Sbjct 242 GATGGATTCTTGATCAATCATGCTCGTGTTTTAGTTGGTTCGGGTAGAGAGAGTT-TCGA 300
Query 374 GAAGGGCAAAAAAGCTCTCCAGAATTGGAAGCATTTTGGTATGGATTGGGCATTTGTTGA 433
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGGGCAAAAAAGCTCTACAGAATTGGAAGCATTTTGGTATGGATTGGGCATTTGTTGA 360
Query 434 TCCTGCAACACCTGTTGAAACCGGTAAGAAGTTTTGCATTTGCGTGAAAGAAGTTCTTCC 493
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 TCCTGCAACTCCTGTTGAAACCGGTAAGAAGTTTTGCATTTGTGTGAAAGAAGTTCTTCC 420
Query 494 ATGGGTGATGCTTCCTCTACAAGTGGTTTATGTTGACGAAAGCCGGAAATCAAGAAAAGG 553
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 ATGGGTGATACTTCCTCTACAAGTGGTTTATGTTGACGAGAGCCGGAAATCAAGAAAAGG 480
Query 554 CCCTGCGCATTTCGGTTACGGAAGCGGTACTCTTCAGGGACATTTACTCGCTGGAGAAGA 613
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 481 CCCTGCGCATTTCGGTTACGGAAGCGGTACTCTCCAGGGACATTTATTGGCTGGAGAAGA 540
Query 614 AAAGTTTTCGATAGAGCTTGATGGAAATGGTGAGGTATGGTATGAGATAACGTCTTTCTC 673
| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 ACGGTTTTCTATAGAGCTTGATGGAAATGGTGAGGTATGGTATGAGATAACATCTTTCTC 600
Query 674 AAAGCCTGCTCATTTCTTGTCGTTCCTCGGGTATCCTTATGTGAAGCTAAGGCAGAAGCA 733
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 AAAGCCAGCTCATTTCTTGTCGTTCCTCGGATATCCTTATGTGAAGCTAAGGCAGAAGCA 660
Query 734 CTTTGCTCGTCATTCTTCTGAAGCTGTGCTGAAACATGTCAATGCTTCGTGATGACATCG 793
||||||||||| |||||||||||| ||||| |||||| |||| |||||||||||| ||||
Sbjct 661 CTTTGCTCGTCTTTCTTCTGAAGCAGTGCTAAAACATCTCAAGGCTTCGTGATGATATCG 720
Query 794 AAAATGAAGATATTT-GAATAAACACTTTGTCTATACCAAAAATGAAGATGAAAGGGAAG 852
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 AAAATGAAGATATTTCGT-TAAACACTTTGTCTATACCAAAAATGAAGATGAAAGGTAAG 779
Query 853 GATTTTTATTCAGATGGTTAATACTCTTAATACAT 887
| ||||||||||||||||| ||||||||||||||
Sbjct 780 G-TTTTTATTCAGATGGTTGGTACTCTTAATACAT 813
> Ahg929297 jgi|Araly1|929297|scaffold_301754.1
Length=404
Score = 575 bits (311), Expect = 2e-163
Identities = 349/368 (95%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 396 AATTGGAAGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAACC 455
||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 AATTGCAGGCATTTTGGAATGGATTGGGCATTTGTTGATCCTGCAACTCCTGTTGAAACC 63
Query 456 GGTAAGAAGTTTTGCATTTGCGTGAAAGAAGTTCTTCCATGGGTGATGCTTCCTCTACAA 515
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 64 GGTAAGAAGTTTTGCATTTGTGTGAAAGAAGTTCTTCCATGGGTGATGCTTCCTCTACAA 123
Query 516 GTGGTTTATGTTGACGAAAGCCGGAAATCAAGAAAAGGCCCTGCGCATTTCGGTTACGGA 575
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 124 GTGGTTTATGTTGATGAAAGCCGGAAATCAAGAAAAGGCCCTGCGGATTTCGGTTACGGA 183
Query 576 AGCGGTACTCTTCAGGGACATTTACTCGCTGGAGAAGAAAAGTTTTCGATAGAGCTTGAT 635
||||| ||||||||||| |||||||| |||||||||||| |||||| ||||||||||||
Sbjct 184 AGCGGCACTCTTCAGGGTCATTTACTAGCTGGAGAAGAACGGTTTTCTATAGAGCTTGAT 243
Query 636 GGAAATGGTGAGGTATGGTATGAGATAACGTCTTTCTCAAAGCCTGCTCATTTCTTGTCG 695
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 244 GGAAATGGTGAGGTATGGTATGAGATAACGTCGTTCTCAAAGCCCGCTCATTTCTTGTCG 303
Query 696 TTCCTCGGGTATCCTTATGTGAAGCTAAGGCAGAAGCACTTTGCTCGTCATTCTTCTGAA 755
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 304 TTCCTAGGATATCCTTATGTGAAGCTAAGGCAGAAGCACTTTGCTCGCCATTCTTCTGAA 363
Query 756 GCTGTGCT 763
|| |||||
Sbjct 364 GCAGTGCT 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5