BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17700.1
Length=2189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931631 jgi|Araly1|931631|scaffold_304088.1 2826 0.0
Ahg491066 jgi|Araly1|491066|fgenesh2_kg.7__499__AT4G35780.1 1351 0.0
> Ahg931631 jgi|Araly1|931631|scaffold_304088.1
Length=1686
Score = 2826 bits (1530), Expect = 0.0
Identities = 1636/1688 (97%), Gaps = 3/1688 (0%)
Strand=Plus/Plus
Query 136 ccgccgtggatttttgttttccgatGACGATCAAAGATGAGTCGGAGAGTTGCGGTAGCA 195
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 CCGCCGTGGA-TTTTGTTTTCCGATGACGATCAAAGACGAGTCGGAGAGTTGCGGTAGTA 59
Query 196 GAGCCGTCGTTGCTTCGCCGTCACAAGAAAACCCTAGACATTACCGGATGAAACTTGATG 255
|||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 60 GAGCGGTCGTTGCTTCGCCGGCTCAAGAAAACCCTAGACATTACCGGATGAAACTTGATG 119
Query 256 TCTATAGTGAGGTTTTACAGCGACTTCAAGAATCTAATTACGAAGAAGCCACTCTTCCTG 315
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 TCTACAGTGAGGTTTTACAGCGACTTCAAGAATCTAATTACGAAGAAGCTACTCTTCCTG 179
Query 316 ATTTCGAGGATCAACTTTGGCTCCATTTCAATCGTCTTCCTGCTCGATATGCTCTTGATG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTTCGAGGATCAACTTTGGCTCCATTTCAATCGTCTTCCTGCTCGATATGCTCTTGATG 239
Query 376 TTAAAGTCGAGAGAGCGGAAGATGTTCTCACACATCAGAGATTGCTAAAATTGGCTGCAG 435
||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| | ||
Sbjct 240 TTAAAGTTGAGAGAGCGGAAGATGTTCTTACTCATCAGAGATTACTAAAATTGGCGGAAG 299
Query 436 ATCCTGCTACTAGGCCTGTCTTTGAAGTTCGAAGTGTACAGGTTTCTCCCAGAATCTCTG 495
||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 300 ATCCTGCAACTAGGCCTGTCTTTGAAGTTCGTAGTGTACAGGTTTCTCCTAGAAGCTCTG 359
Query 496 CTGACTCTGACCCTGCGGTGGAGGAAGATGCTCAAAGCTCTCACCAACCAAGCGGACCGG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CTGACTCTGACCCTGCGGTGGAGGAAGATGCTCAAAGCTCTCACCAACCAAGCGGACAGG 419
Query 556 GGGTTCTTGCTCCTCCAACTTTTGGTTCTTCTCCAAATTTTGAGGCTATTACTCAGGGAA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGGTTCTTGCTCCTCCAACTTTTGGTTCTTCTCCAAATTTTGAGGCTATTACTCAGGGAA 479
Query 616 GTAAAATTGTTGAAGATGTTGATAGTGTTGTGAATGCAACATTGTCTACACGACCGATGC 675
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 480 GTAAAATTGTTGAAGATGTTGATAGTGTTGTGAATGCAACATTGTCTACTCGACCAATGC 539
Query 676 ACGAGATCACTTTTTCAACCATTGATAAACCGAAACTCCTTAGCCAGCTAACTTCCCTGC 735
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 ACGAGATCACATTTTCAACCATCGATAAACCGAAACTCCTTAGCCAGCTAACTTCCCTGC 599
Query 736 TTGGTGAGCTTGGACTGAATATACAAGAGGCTCATGCTTTTTCCACTGTAGATGGTTTCT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGGTGAGCTTGGACTGAATATACAAGAGGCTCATGCTTTTTCCACTGTAGATGGTTTCT 659
Query 796 CTTTAGATGTCTTTGTAGTTGACGGTTGGTCTCAGGAGGAAACTGATGGCCT-AAGAGAT 854
|| ||||||||||||||||||| |||||||||||||||||||| ||||| || ||| |||
Sbjct 660 CTCTAGATGTCTTTGTAGTTGATGGTTGGTCTCAGGAGGAAACAGATGGTCTAAAG-GAT 718
Query 855 GCATTGAGCAAAGAAATACTGAAGCTTAAGGATCAACCTGGTTCAAAACAGAAATCTATT 914
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 GCATTGAGCAAAGAGATATTGAAGCTTAAGGATCAACCTGGTGCAAAACAGAAATCTATT 778
Query 915 TCTTTCTTTGAGCATGACAAATCAAGCAATGAGCTTATACCCGCCTGCATTGAAATACCC 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTTTCTTTGAGCATGACAAATCAAGCAATGAGCTTATACCCGCCTGCATTGAAATACCC 838
Query 975 ACGGATGGAACTGATGAGTGGGAAATCGACGTGACTCAGCTCAAAATTGAAAAGAAAGTG 1034
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 839 ACGGATGGAACTGATGAGTGGGAAATTGACGTGAAACAGCTCAAAATTGAAAAGAAAGTG 898
Query 1035 GCATCTGGTTCATATGGGGATCTGCATAGAGGCACTTATTGCAGTCAGGAAGTAGCTATC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCATCTGGTTCATATGGGGATCTGCATAGAGGCACTTATTGCAGTCAGGAAGTAGCTATC 958
Query 1095 AAATTTCTCAAGCCTGATCGTGTAAACAATGAGATGCTGAGAGAATTTTCTCAAGAAGTT 1154
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 AAATTTCTCAAGCCTGAGCGTGTAAACAATGAGATGCTTAGAGAATTTTCTCAAGAAGTT 1018
Query 1155 TTTATAATGAGGAAAGTTCGACACAAAAACGTCGTTCAATTTTTGGGTGCATGCACAAGA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTATAATGAGGAAAGTTCGACACAAAAACGTCGTTCAATTTTTGGGTGCATGCACAAGA 1078
Query 1215 TCTCCAACCCTCTGTATAGTGACTGAGTTTATGGCTCGAGGGAGCATATATGATTTTCTT 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCTCCAACCCTCTGTATAGTGACTGAGTTTATGGCTCGAGGGAGCATATATGATTTTCTT 1138
Query 1275 CACAAACAGAAATGCGCTTTCAAACTTCAAACTTTACTCAAAGTTGCACTTGATGTCGCA 1334
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1139 CACAAACAGAAATGCGCTTTCAAACTTCAAACTTTGCTTAAAGTTGCACTTGATGTGGCA 1198
Query 1335 AAAGGAATGAGCTATTTGCATCAAAACAACATTATTCACAGGGACCTTAAGACTGCGAAT 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AAAGGAATGAGCTATTTGCATCAAAACAACATTATTCACAGGGACCTTAAGACTGCGAAT 1258
Query 1395 CTTCTTATGGATGAACATGGACTTGTCAAGGTTGCTGATTTCGGAGTTGCCAGAGTGCAG 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTTCTTATGGATGAACATGGACTTGTCAAGGTTGCTGATTTCGGAGTTGCCAGAGTGCAG 1318
Query 1455 ATTGAATCAGGGGTCATGACTGCTGAAACTGGGACATACCGGTGGATGGCTCCAGAGGTC 1514
||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 1319 ATTGAATCAGGAGTCATGACAGCTGAAACAGGGACTTACCGGTGGATGGCTCCAGAGGTC 1378
Query 1515 ATTGAGCACAAACCTTACAATCACAAGGCAGATGTGTTCAGTTATGCGATAGTGCTATGG 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATTGAGCACAAACCTTACAATCACAAGGCAGATGTGTTCAGTTATGCGATAGTGCTATGG 1438
Query 1575 GAACTTCTGACTGGTGACATCCCATATGCTTTCTTGACTCCACTACAAGCAGCTGTTGGC 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GAACTTCTGACTGGTGACATCCCATATGCTTTCTTGACTCCACTACAAGCAGCTGTTGGC 1498
Query 1635 GTTGTCCAAAAGGGGCTTCGACCCAAAATCCCAAAGAAAACACACCCAAAAGTGAAGGGG 1694
||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 1499 GTTGTCCAAAAGGGGCTTCGACCGAAAATTCCAAAGAGAACACACCCAAAAGTGAAGGGA 1558
Query 1695 CTTCTAGAGAGATGCTGGCATCAAGACCCAGAACAGAGACCACTGTTTGAGGAAATCATA 1754
|| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1559 CTACTAGAGAGATGCTGGCATCAAGACCCGGCACAGAGACCACTGTTTGAGGAAATCATA 1618
Query 1755 GAAATGCTACAACAGATAATGAAAGAGGTAAACGTCGTAGTGTGATCTCCCGAGTaaaaa 1814
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1619 GAAATGCTACAACAGATAATGAAAGAGGTAAACGTCGTAGTGTGATCTCCCGAGTACAAA 1678
Query 1815 aaaCACCT 1822
||||||||
Sbjct 1679 AAACACCT 1686
> Ahg491066 jgi|Araly1|491066|fgenesh2_kg.7__499__AT4G35780.1
Length=2049
Score = 1351 bits (731), Expect = 0.0
Identities = 1358/1655 (82%), Gaps = 66/1655 (4%)
Strand=Plus/Plus
Query 150 tgttttccgatGACGATCAAAGATGAGTC---GGAGAGTTGCGGTAGCAGAGCCGTCGTT 206
|||||||||||| |||||||||| ||| | |||||||||||| |||||||| || ||
Sbjct 131 TGTTTTCCGATGGCGATCAAAGAGGAGACGGAGGAGAGTTGCGGAAGCAGAGCAGTAGTA 190
Query 207 GCTTCGCCGTCAC--AAGAAAACCCTAGACATTACCGGATGAAACTTGATGTCTATAGTG 264
|||| | | || |||||| ||||||||| | || ||||||||||| || || |||
Sbjct 191 GCTT--CAATAACGAAAGAAAGCCCTAGACAGCATCGTATGAAACTTGAGGTGTACGGTG 248
Query 265 AGGTT-TTACAGCGACTTCAAGAATCTAATTACGAAGAAGCCACTCTT-CCTGATTTCGA 322
||||| || || ||| | || ||||| |||||||||||||| | | || |||| ||| ||
Sbjct 249 AGGTTCTT-CAACGAATCCAGGAATCCAATTACGAAGAAGCTAAT-TTCCCTGGTTTTGA 306
Query 323 GGATCAACTTTGGCTCCATTTCAATCGTCTTCCTGCTCGATATGCTCTT-GATGTTAAAG 381
||||| || ||||| || |||||||||||||||||| |||||||| || |||||||| |
Sbjct 307 TGATCACCTCTGGCTTCACTTCAATCGTCTTCCTGCTAGATATGCT-TTGGATGTTAATG 365
Query 382 TCGAGAGAGCGGAAGATGTTCTCACACATCAGAGATTGCTAAAATTGGCTGCAGAT-CCT 440
| |||||||| ||||||||||| || |||||||||||| | |||||||||| |||| |||
Sbjct 366 TTGAGAGAGCAGAAGATGTTCTTACTCATCAGAGATTGTTGAAATTGGCTGAAGATCCCT 425
Query 441 GCTACTAGGCCTGTCTTT-GAAGTTCGAAGTGTACAGGTTTCT-CC-C-----A--G-AA 489
||||||| ||||| ||| |||||||| |||||||||||||| || | | | ||
Sbjct 426 -CTACTAGACCTGT-TTTCGAAGTTCGTTGTGTACAGGTTTCTCCCACATTGAATGGAAA 483
Query 490 -TCT-CTG-C--TGA--C-TCTGACCCTGCGGTGGAGGAAGATGCTCAAAGCTCTCACCA 541
||| || | ||| | || || |||||||| |||||||||||||||||||| | |
Sbjct 484 TTCTGGTGACGTTGATCCTTCAGATCCTGCGGTCAAGGAAGATGCTCAAAGCTCTTA-TA 542
Query 542 ACCAAGCGGACCGGGGGTTCTTGCTCCTCCAACTTTTGGTTCTTCTCCAAATTTTGAGGC 601
| | | || || |||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 543 A-C--TC-GA----GGCCTCTTGCACCTCCAACTTTTGGTTCTTCTCCGAATTTCGAGGC 594
Query 602 TATTACTCAGGGAAGT-AAA-AT--TGTTGAAGATGTTGATAGTGTTGTGAATGCAACA- 656
| ||||||| | | ||| || || | |||| | |||||||| ||| ||||| |||
Sbjct 595 TCTTACTCA-AGCCTTCAAAGATCATGCTCAAGACGATGATAGTGCTGTCAATGC-ACAC 652
Query 657 TTGTCT-A--CACGACCGATGCACGAGATCACTTTTTCAACCATTGATAAACCGAAACTC 713
||| || | | |||||||||||||| ||||| ||||| || || || | || ||||||
Sbjct 653 TTGCCTAATTCTCGACCGATGCACGAAATCACCTTTTCTACAATAGACAGGCCCAAACTC 712
Query 714 CTTAGCCAGCTAACTTCCCTGCTTGGTGAGCTTGGACTGAATATACAAGAGGCTCATGCT 773
||||| ||| ||||||| |||||||||| |||||| ||||||| ||||| |||||||||
Sbjct 713 CTTAGTCAGTTAACTTCAATGCTTGGTGAACTTGGATTGAATATTCAAGAAGCTCATGCT 772
Query 774 TTTTCCACTGTAGATGGTTTCTCTTTAGATGTCTTTGTAGTTGACGGTTGGTCTCAGGAG 833
|| || || | |||||||||||||| ||||| || || ||||| |||||||| ||||||
Sbjct 773 TTCTCTACCGCGGATGGTTTCTCTTTGGATGTATTCGTTGTTGATGGTTGGTCGCAGGAG 832
Query 834 GAAACTGATGGCCTAAGAGATGCATTGAGC-AAAGAAATACTGAAGCTTAAGGATCAACC 892
||||| || || ||| ||||||||||| | || || ||| ||||||||||||||||||
Sbjct 833 GAAACAGAAGGTTTAAAAGATGCATTGA-CGAAGGAGATAAGGAAGCTTAAGGATCAACC 891
Query 893 TGGTTCAAAACAGAAATCTATTTCTTTCTTTGAGCATGACAAATCAAGCAATGAGCTTAT 952
| ||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||| |
Sbjct 892 TTGTTCAAAACAGAAATCTATCACTTTCTTCGAGCATGACAAATCAACCAACGAGCTGCT 951
Query 953 ACCCGCCTGCATTGAAATACCCACGGATGGAACTGATGAGTGGGAAATCGACGTGACTCA 1012
||| || || |||||||||| |||||||||||||||||||||||||| ||| ||| ||
Sbjct 952 ACCTGCATGTGTTGAAATACCTACGGATGGAACTGATGAGTGGGAAATTGACATGAAACA 1011
Query 1013 GCTCAAAATTGAAAAGAAA-GTGGCATCTGGTTCATATGGGGATCTGCATAGAGGCACTT 1071
||||||||||||||| ||| ||||||| ||| ||||| || || || |||||| || |
Sbjct 1012 GCTCAAAATTGAAAA-AAAGGTGGCATGTGGATCATACGGAGAACTATTTAGAGGAACCT 1070
Query 1072 ATTGCAGTCAGGAAGTAGCTATCAAATTTCTCAAGCCTGATCGTGTAAACAATGAGATGC 1131
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || ||||
Sbjct 1071 ATTGTAGTCAGGAAGTAGCTATCAAAATTCTCAAGCCTGAGCGTGTTAATGCGGAAATGC 1130
Query 1132 TGA-GAGAATTTTCTCAAGAAGTTTTTATAATGAGGAAAGTTCGACACAAAAACGTCGTT 1190
| | |||| |||||||| ||||| | ||||||||||||||| || || ||||| || ||
Sbjct 1131 T-ACGAGAGTTTTCTCAGGAAGTGTATATAATGAGGAAAGTCCGGCATAAAAATGTTGTC 1189
Query 1191 CAATTTTTGGGTGCATGCACAAGATCTCCAACCCTCTGTATAGTGACTGAGTTTATGGCT 1250
|| ||| | |||||||| ||| |||| |||| |||||| || ||||||||||| ||| ||
Sbjct 1190 CAGTTTATCGGTGCATGTACACGATCACCAAACCTCTGCATTGTGACTGAGTTCATGACT 1249
Query 1251 CGAGGGAGCATATATGATTTTCTTCACAAACAGAAATGCGCTTTCAAACTTCAAACTTTA 1310
|| |||||||| ||||| || ||||||||||| ||| ||| ||| ||| ||||| ||||
Sbjct 1250 CGGGGGAGCATTTATGACTTCCTTCACAAACACAAAGGCGTTTTTAAAATTCAATCTTTG 1309
Query 1311 CTCAAAGTTGCACTTGATGTCGCAAAAGGAATGAGCTATTTGCATCAAAACAACATTATT 1370
|||||||| |||||||| ||| | |||||||||| ||| ||||||||||||| ||||||
Sbjct 1310 CTCAAAGTGGCACTTGACGTCTCGAAAGGAATGAATTATCTGCATCAAAACAATATTATT 1369
Query 1371 CACAGGGACCTTAAGACTGCGAATCTTCTTATGGATGAACATGGACTTGTCAAGGTTGCT 1430
|| || |||||||||||||| |||||||||||||| ||||||| | |||||||||||||
Sbjct 1370 CATAGAGACCTTAAGACTGCTAATCTTCTTATGGACGAACATGAAGTTGTCAAGGTTGCC 1429
Query 1431 GATTTCGGAGTTGCCAGAGTGCAGATTGAATCAGGGGTCATGACTGCTGAAACTGGGACA 1490
||||| || |||||||||||||||| ||| || ||||||||||| |||||||| ||||||
Sbjct 1430 GATTTTGGGGTTGCCAGAGTGCAGACTGAGTCGGGGGTCATGACAGCTGAAACAGGGACA 1489
Query 1491 TACCGGTGGATGGCTCCAGAGGTCATTGAGCACAAACCTTACAATCACAAGGCAGATGTG 1550
||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 1490 TACCGATGGATGGCTCCAGAGGTCATTGAGCACAAACCTTATGATCACAGGGCGGATGTC 1549
Query 1551 TTCAGTTATGCGATAGTGCTATGGGAACTTCTGACTGGTGA-CATCCCATATGCTTTCTT 1609
||||| || ||||| ||||| ||||||||| ||||||| || | |||||||| ||| |||
Sbjct 1550 TTCAGCTACGCGATTGTGCTGTGGGAACTTTTGACTGGGGAAC-TCCCATATTCTTACTT 1608
Query 1610 GACTCCACTACAAGCAGCTGTTGGCGTTGTCCAAAAGGGGCTTCGACCCAAAATCCCAAA 1669
||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||| |||||
Sbjct 1609 GACTCCACTACAAGCTGCTGTTGGCGTTGTCCAAAAGGGACTTAGACCAAAAATTCCAAA 1668
Query 1670 GAAAACACACCCAAAAGTGAAGGGGCTTCTAGAGAGATGCTGGCATCAAGACCCAGAACA 1729
| ||||||| |||||| ||| | ||||| |||| ||||||||| |||||||||| ||
Sbjct 1669 GGAAACACATCCAAAACTGACTGAACTTCTTGAGAAATGCTGGCAGCAAGACCCAGCTCA 1728
Query 1730 GAGACC-ACTGTTTG-AGGAAATCATAGAAATGCT 1762
||||| | | |||| || ||||||||||||||||
Sbjct 1729 AAGACCCAAT-TTTGCAG-AAATCATAGAAATGCT 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82389199935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5