BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17705.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480665 jgi|Araly1|480665|fgenesh2_kg.3__3366__AT2G17705.1 872 0.0
> Ahg480665 jgi|Araly1|480665|fgenesh2_kg.3__3366__AT2G17705.1
Length=754
Score = 872 bits (472), Expect = 0.0
Identities = 700/801 (87%), Gaps = 52/801 (6%)
Strand=Plus/Plus
Query 3 aagaagaaaaagac--gaga-gacgtgaagaagaaatcagaattcagaattgagaagCAA 59
|||||||||||| | |||| || ||| ||||||| |||||||| |||| | || |||
Sbjct 1 AAGAAGAAAAAGCCGAGAGAGGAGGTG-AGAAGAATTCAGAATTGAGAA---ACAA-CAA 55
Query 60 ACAATGGCTTCAACGATCTACACTTGCAAAGAATGCGGATCAGATCTGAATCTAAACCCT 119
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 56 ACAATGGCTTTAACGATCTACACTTGCAAAGAATGCGGATCAGATCTAAATCTAAACCCT 115
Query 120 AACGATTTATTTCCACCGGATTTCTACTTCGAAGCCGGTAACAAAGGAACACTCTCATTC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 116 AACGATTTATTTCCACCGGATTTCTACTTCGAAGCCGGTAACAAAGGAACGCTCTCATTC 175
Query 180 GCCGCCGTCGACGCCGAGAAATTCCGATTCGAGAAAGAAGATAAGATCATGCCTTTCTTC 239
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 176 GCCGCCGTCGATGCCGAGAAATTCCGATTTGAAAAAGAAGACAAGATCATGCCTTTCTTC 235
Query 240 GAAACCCTAAATTACTGGGGAATCCAACGGAAACGAACCAAGATCAAGTGCACTAGCTGC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 236 GAAACCCTAAATTACTGGGGAATCCAACGGAAACGAACCAAGATCAAGTGTAATAGTTGC 295
Query 300 AACCACCTCATCGGTTACATCTACGACGATGGTCCTCCTCTCACTGGTGGTATTGGCCAA 359
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 296 AACCACCTCATCGGCTACATCTACGACGATGGTCCTCCGCTCACTGGTGGTATTGGTCAA 355
Query 360 TACGGATTTGGTCCGAGTCAAGTCATTCCTCGTGCTCCTCGGTATCGATTCAAAACCAAG 419
|||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 356 TACGGATTCGGTCCGAGTCAGGTCATTCCTCGTGCTGCTCGATATCGATTCAAAACCAAG 415
Query 420 GCGGTTCAAGTCTCGTCCCAGACTTAGCTAAAGCAGAGGGTTTAATGCTTTTACATAGAT 479
||||||||||||||||||||||||||||| ||||| |||| | | |||||
Sbjct 416 GCGGTTCAAGTCTCGTCCCAGACTTAGCTGAAGCA-----TTTA---C----A--TAGAT 461
Query 480 ATGTATAAACTTGTTAAAAGGGTTAATAGGATTGTAGATGTTTGTTGCTTAAAACTCAGA 539
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 462 ATGTATAAACTTGTCAAAAGGGTTCATAGGATTGTAGATGTTTGTTGCTTAAAAATCAGT 521
Query 540 TAGTAAGGTCGTTAGACTTG-C-CATCGGTCTTGGCGCTTGCTTCAGCGCCAAGACGGAT 597
| | | ||||| |||| | | ||| ||| | | | ||||||||||| |||
Sbjct 522 T-GCCA--TCGTT---CTTGGCGC-TCG--CTT--CAC---CAAAAGCGCCAAGACCGAT 567
Query 598 GGCAATACGGAGGTTTAACCGCCTTTTGGAACTGATTTTTGTTGCTTGCTTTTGAAGAAA 657
||||| | ||||||||||||||||| || | |||||||||||| ||||||||||||||||
Sbjct 568 GGCAACAAGGAGGTTTAACCGCCTTCTG-AGCTGATTTTTGTTACTTGCTTTTGAAGAAA 626
Query 658 CATCTACAATCATATTCTCTCCTTTGTCTCTTGTCTATTGTAGCTAGTATAGTTAAGATA 717
||||||| ||| |||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct 627 CATCTACTATCCTATTCTCTGTTTTATCTCTTGTCTATTGTAGCTAGTTTAGTTAAGATA 686
Query 718 TGTATGTTAAGTATGTTGTTGGCTTGGATTTTGATCATATTTGTAGTGTTTGTGTTTGTT 777
||| | || || | |||||||||||||||||| |||| |||||||||| |||
Sbjct 687 TGT--G----GT-TG--G----CTTGGATTTTGATCATATGTGTAATGTTTGTGTTCGTT 733
Query 778 GTGAGTTTGAATCACATGGTT 798
|||| ||||||||||||||||
Sbjct 734 GTGAATTTGAATCACATGGTT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5