BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17720.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480667 jgi|Araly1|480667|fgenesh2_kg.3__3368__AT2G17720.1 1838 0.0
Ahg328172 jgi|Araly1|328172|fgenesh1_pm.C_scaffold_7000399 765 0.0
> Ahg480667 jgi|Araly1|480667|fgenesh2_kg.3__3368__AT2G17720.1
Length=1299
Score = 1838 bits (995), Expect = 0.0
Identities = 1227/1332 (92%), Gaps = 43/1332 (3%)
Strand=Plus/Plus
Query 1 AGAAGACAAAGAAGAAGAGATTCGATCACACAAGAAAAATTACAATTCTTCTTAATCCTC 60
|||||||||||||||||||| || |||||||||||||||||| ||| ||||||||| ||
Sbjct 1 AGAAGACAAAGAAGAAGAGAATCAATCACACAAGAAAAATTATAATCCTTCTTAAT--TC 58
Query 61 ATTATTATATATATAAATAAACTTCAATCTAAGCTTCTTCGTAATTTCTCTTTCGTTCAA 120
||| | |||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 59 -TTA-T-TATATATAAATAAACTTCAATCTAAGCTTCGTCGTAATTTCTCTTCCGTTCAA 115
Query 121 TGTTATTCTTTTAGATCTCGAACAAAACAAAATCTCCAG---AAGAAAAAACCAAATTCC 177
|||| |||||||||||||||||||||||||||||||||| || |||||| ||| ||||
Sbjct 116 TGTTGTTCTTTTAGATCTCGAACAAAACAAAATCTCCAGAAAAAAAAAAAATCAATTTCC 175
Query 178 ATGGCGTCTAAATCGAAGCAGCATCTTCGTTATCAGCCGCGAAAATCTGTGTCACGATCA 237
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 176 ATGGCGTCTAAATCGAAGCAACATCTTCGTTATCAGCCACGGAAATCTGTGTCACGATCA 235
Query 238 ACACAAGCTTTCACGGTGCTTATACTTCTTCTCGTAGTGATTCTGATTCTTCTGGGTCTC 297
|||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 236 ACACAAGCTTTCACAGTGCTTATTCTTCTACTTGTAGTGATTCTGATTCTTCTGGGTCTC 295
Query 298 GGGATTTTGTCACTACCTAATGCTAATAGAAACTCTTCCAAGACGAATGATTTGACCAAC 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 GGGATTTTGTCACTACCTAATGCTAATAGAAACTCTTCGAAGACGAATGATTTGACCAAC 355
Query 358 ATTGTACGAAAGAGTGAGACGAGTTCTGGAGATGAAGAAGGGAATGGTGAACGTTGGGTT 417
|||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||
Sbjct 356 ATTGTACGGAAGAGTGAGACGAGTGATGGAGATGAAGATGGGAATGGTGAGCGTTGGGTT 415
Query 418 GAAGTTATTTCTTGGGAGCCTCGTGCTGTTGTTTATCACAATTTCTTGACTAATGAAGAA 477
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 416 GAAGTGATTTCTTGGGAGCCTCGAGCTGTTGTTTATCACAATTTCTTGACCAATGAAGAA 475
Query 478 TGTGAGCACTTGATCAGCCTTGCTAAACCGAGTATGGTTAAGTCAACCGTGGTAGATGAG 537
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 476 TGTGAGCACTTGATCAATCTTGCTAAACCGAACATGGTTAAGTCAACCGTGGTTGATGAG 535
Query 538 AAAACCGGTGGGAGCAAAGATAGCAGAGTGAGAACTAGCTCAGGAACTTTTCTTAGAAGA 597
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 536 AAAACCGGTGGTAGCAAAGATAGCAGAGTAAGAACTAGCTCAGGAACTTTCCTTAGAAGA 595
Query 598 GGACATGACGAAGTTGTCGAGGTGATTGAGAAAAGGATTTCAGATTTCACCTTCATTCCT 657
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 596 GGACATGACGAAGTTGTTGAGGTGATTGAGAAAAGGATTTCAGATTTCACATTCATTCCT 655
Query 658 GTTGAAAATGGTGAAGGTCTTCAAGTTCTTCACTACCAAGTTGGGCAGAAGTATGAGCCT 717
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 656 GTTGAAAATGGAGAAGGTCTTCAAGTTCTTCACTACCAAGTTGGGCAGAAGTACGAGCCT 715
Query 718 CACTATGACTATTTCTTAGATGAGTTCAACACCAAGAATGGAGGACAACGAATAGCTACT 777
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 CACTATGACTATTTCTTAGATGAGTTCAACACCAAGAACGGAGGACAACGAATAGCTACT 775
Query 778 GTGCTTATGTACCTCTCTGATGTCGATGATGGTGGCGAGACTGTGTTCCCTGCAGCAAGA 837
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTGCTTATGTACCTCTCGGATGTCGATGATGGTGGCGAGACTGTGTTCCCTGCAGCAAGA 835
Query 838 GGAAACATTAGTGCTGTCCCATGGTGGAACGAGCTCTCAAAATGTGGTAAAGAAGGACTA 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGAAACATTAGTGCAGTCCCATGGTGGAACGAGCTCTCAAAATGTGGTAAAGAAGGACTA 895
Query 898 TCTGTTCTACCAAAGAAGCGAGATGCTTTACTTTTCTGGAACATGAGGCCTGATGCATCT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 896 TCTGTTCTACCAAAGAAGCGAGATGCTTTACTTTTCTGGAACATGAGGCCTGATGCCTCT 955
Query 958 CTAGACCCTTCGAGCTTGCACGGTGGATGTCCAGTGGTGAAAGGAAACAAATGGTCATCC 1017
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CTAGACCCTTCGAGTTTGCACGGTGGATGTCCAGTGGTGAAAGGAAACAAATGGTCATCC 1015
Query 1018 ACGAAATGGTTCCATGTCCACGAGTTCAAGGTTTAAGAG--AAAC-CA-AACAAAGAAAG 1073
|||||||||||||||||||||||||||||||||||||| |||| || || ||| |||
Sbjct 1016 ACGAAATGGTTCCATGTCCACGAGTTCAAGGTTTAAGAACCAAACACAGAAAAAAAAAA- 1074
Query 1074 CTAAAATATGAGGAGGTTTTTCATGGAAGCTTCGAATGTGTGTGGATACAGTTAAACAGG 1133
||||||| ||||| | |||| || ||||||||| ||| |||||||||||| |||||||
Sbjct 1075 CTAAAATTTGAGG-G-TTTT-CACGGAAGCTTCAAATTTGTGTGGATACAAATAAACAGA 1131
Query 1134 TATA--ATGTGTATTTCCCTTTTGAAGTGAGAGATCCTTAGGAAATTGGAGGCTGTTCTT 1191
| || |||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1132 TGTACGATGTGT-TT-CCCTTTTGAAGTGAGAGATCCTTAGGAAATTGGAGGCTGTT-TT 1188
Query 1192 TCATGGGGGATATTTGAACTTTTTGTACTTTTTCTTCTAAATTATTTTGAATGATTTGTA 1251
|| | |||||||||||||||||| ||||| ||| ||||| | | |
Sbjct 1189 TCCTTAGGGATATTTGAACTTTTT---CTTTT------AAACTATTT-G--T-A------ 1229
Query 1252 CTTTACGACATATTCGAATCTGAGTCTT-GTAACTTTTAACAACTCAATACGAACCATGA 1310
||||||||||| |||| |||||||| || |||||||| ||||||||||||| |||||||
Sbjct 1230 CTTTACGACATGTTCGGATCTGAGTTTTTGTAACTTT-AACAACTCAATAC-AACCATGC 1287
Query 1311 ATTTTCCGTTTA 1322
||||||||||||
Sbjct 1288 ATTTTCCGTTTA 1299
> Ahg328172 jgi|Araly1|328172|fgenesh1_pm.C_scaffold_7000399
Length=873
Score = 765 bits (414), Expect = 0.0
Identities = 690/822 (84%), Gaps = 23/822 (3%)
Strand=Plus/Plus
Query 241 CAAGCTTTCACGGTGCTTATACTTCTTCTCGTAGTGATTCTGATTCTTCTGGGTCTCGGG 300
||||||||||| || || |||||| ||| | || ||| |||| ||| | ||||||||
Sbjct 55 CAAGCTTTCACAGTTCTCATACTTGGACTCTTTGTCATTTTGATCCTTGTCGGTCTCGGA 114
Query 301 AT-TTTGTCACTACCTAATGCTAA-TAGAAACTCTTCCAAGACGAAT-GATTTGACCAAC 357
|| || ||||||||||| | || || | |||||| | | || || |||||||||| |
Sbjct 115 ATCCTT-TCACTACCTAACACCAACAAG-AGCTCTTCTAGGCCG-ATGGATTTGACCACC 171
Query 358 ATTGTACGAAA-GA--G-TGAGA---CGAGTTCTGGAGATGAAGAAG--GG-AATGGTGA 407
||||||| ||| || | |||| ||||| |||||| ||||||| || ||||||||
Sbjct 172 ATTGTAC-AAACGATCGAGGAGAGGGAGAGTTATGGAGACGAAGAAGACGGTAATGGTGA 230
Query 408 ACGTTGGGTTGAAGTTATTTCTTGGGAGCCTCGTGCTGTT-GTTTATCACAATTTCTTGA 466
|| ||| | |||||||| || ||||||||| | ||| || |||||||||||||||||||
Sbjct 231 CCGCTGGCTCGAAGTTATCTCGTGGGAGCCTAGAGCT-TTCGTTTATCACAATTTCTTGA 289
Query 467 CTAATGAAGAATGTGAGCACTTGATCAGCCTTGCTAAACCGAGTATGGTTAAGTCAACCG 526
| |||||||||||||||||||||||||| ||||||||||| |||||||| || |||| |
Sbjct 290 CCAATGAAGAATGTGAGCACTTGATCAGTCTTGCTAAACCTAGTATGGTGAAATCAAAGG 349
Query 527 TGGTAGATGAGAAAACCGGTGGGAGCAAAGATAGCAGAGTGA-GAACTAGCTCAGGAACT 585
|||| |||| ||||||||| ||||| ||| |||||||| | |||| || |||||||||
Sbjct 350 TGGTTGATGTGAAAACCGGAAAGAGCATAGACAGCAGAGT-ACGAACCAGTTCAGGAACT 408
Query 586 TTTCTTAGAAGAGGACATGACGAAGTTGTCGAGGTGATTGAGAAAAGGATTTCAGATTTC 645
||||||| |||||||||||||||| | || || | ||||||||| |||||||||||||||
Sbjct 409 TTTCTTAAAAGAGGACATGACGAAATCGTGGAAGAGATTGAGAATAGGATTTCAGATTTC 468
Query 646 ACCTTCATTCCTGTTGAAAATGGTGAAGGTCTTCAAGTTCTTCACTACCAAGTTGGGCAG 705
|||||||||||| | |||||||| ||||| || |||||||| || || |||||||||||
Sbjct 469 ACCTTCATTCCTATAGAAAATGGAGAAGGGCTACAAGTTCTCCATTATGAAGTTGGGCAG 528
Query 706 AAGTATGAGCCTCACTATGACTATTTCTTAGATGAGTTCAACACCAAGAATGGAGGACAA 765
|| |||||||||||| ||||||||||||| ||||||||||| || ||| |||||||||
Sbjct 529 AAATATGAGCCTCACCATGACTATTTCTTCGATGAGTTCAATGTCAGGAAAGGAGGACAA 588
Query 766 CGAATAGCTACTGTGCTTATGTACCTCTCTGATGTCGATGATGGTGGCGAGACTGTGTTC 825
||||| ||||| || |||||||||||||| ||||| ||||| || ||||| || || |||
Sbjct 589 CGAATTGCTACAGTACTTATGTACCTCTCGGATGTTGATGAAGGCGGCGAAACAGTTTTC 648
Query 826 CCTGCAG-CAAGAGGAAACATTAGTGCTGTCCCATGGTGGAACGAGCTCTCAAAATGTGG 884
||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 649 CCTGCAGCCAA-AGGAAACATTAGTGCTGTCCCATGGTGGGACGAGCTCTCACAATGTGG 707
Query 885 TAAAGAAGGACTATCTGTTCTACCAAAGAAGCGAGATGCTTTACTTTTCTGGAACATGAG 944
|||||||||||| |||||||| ||||||||| ||||||||||||| ||||||| |||||
Sbjct 708 TAAAGAAGGACTCTCTGTTCTGCCAAAGAAGAGAGATGCTTTACTCTTCTGGAGCATGAA 767
Query 945 GCCTGATGCATCTCTAGACCCTTCGAGCTTGCACGGTGGATGTCCAGTGGTGAAAGGAAA 1004
|||||| || |||||||||||||| || ||||| ||||| ||||||||| | ||||||||
Sbjct 768 GCCTGACGCCTCTCTAGACCCTTCTAGTTTGCATGGTGGTTGTCCAGTGATCAAAGGAAA 827
Query 1005 CAAATGGTCATCCACGAAATGGTTCCATGTCCACGAGTTCAA 1046
||| |||||||| || |||||||| || || ||||||| |||
Sbjct 828 CAAGTGGTCATCAACTAAATGGTTTCACGTTCACGAGTACAA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5