BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17723.1 Length=267 Score E Sequences producing significant alignments: (Bits) Value Ahg906603 jgi|Araly1|906603|Al_scaffold_0003_3731 294 2e-79 > Ahg906603 jgi|Araly1|906603|Al_scaffold_0003_3731 Length=243 Score = 294 bits (159), Expect = 2e-79 Identities = 209/233 (90%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 10 AGCATATTCTTTAAGCTTCTGTTATTGGTTTCTCTTTTAGTCGTTATCTTCAGACAAAGC 69 |||||||||||||||||| ||||||||||||||||| ||||| ||| |||| |||||| | Sbjct 7 AGCATATTCTTTAAGCTTATGTTATTGGTTTCTCTTCTAGTCATTACCTTCCGACAAAAC 66 Query 70 TATGCAGTCGCCGATTATTGTAATAGAGATGCTGACTGTAAGCGGGTATGCTTAAGACCG 129 ||||||||||| ||||||||| ||||||| | |||||| |||| |||||| | |||||| Sbjct 67 TATGCAGTCGCGGATTATTGTGATAGAGACGATGACTGCAAGCCAGTATGCATGAGACCG 126 Query 130 TACGCATGCAACTTAACCCGTCACCTTTGTATGTGTCATCCAAATGATGTCAGTTCTTCT 189 ||||| |||||||| ||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 127 TACGCTTGCAACTTGACCCGTCACGTTTGTATGTGTCGTCCAAATGATGTCAGTTCTTCT 186 Query 190 AAACAACATTGTATTCCAGAACATAAAGGTTTTGGAGAAGGAGGACCTCCACC 242 ||||||| ||||||||||||||||||||||| |||| | | |||||||||||| Sbjct 187 AAACAACGTTGTATTCCAGAACATAAAGGTTGTGGA-A-G-AGGACCTCCACC 236 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9317935684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5