BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17723.1

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906603 jgi|Araly1|906603|Al_scaffold_0003_3731                    294    2e-79


> Ahg906603 jgi|Araly1|906603|Al_scaffold_0003_3731
Length=243

 Score =  294 bits (159),  Expect = 2e-79
 Identities = 209/233 (90%), Gaps = 3/233 (1%)
 Strand=Plus/Plus

Query  10   AGCATATTCTTTAAGCTTCTGTTATTGGTTTCTCTTTTAGTCGTTATCTTCAGACAAAGC  69
            |||||||||||||||||| ||||||||||||||||| ||||| ||| |||| |||||| |
Sbjct  7    AGCATATTCTTTAAGCTTATGTTATTGGTTTCTCTTCTAGTCATTACCTTCCGACAAAAC  66

Query  70   TATGCAGTCGCCGATTATTGTAATAGAGATGCTGACTGTAAGCGGGTATGCTTAAGACCG  129
            ||||||||||| ||||||||| ||||||| | |||||| ||||  |||||| | ||||||
Sbjct  67   TATGCAGTCGCGGATTATTGTGATAGAGACGATGACTGCAAGCCAGTATGCATGAGACCG  126

Query  130  TACGCATGCAACTTAACCCGTCACCTTTGTATGTGTCATCCAAATGATGTCAGTTCTTCT  189
            ||||| |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct  127  TACGCTTGCAACTTGACCCGTCACGTTTGTATGTGTCGTCCAAATGATGTCAGTTCTTCT  186

Query  190  AAACAACATTGTATTCCAGAACATAAAGGTTTTGGAGAAGGAGGACCTCCACC  242
            ||||||| ||||||||||||||||||||||| |||| | | ||||||||||||
Sbjct  187  AAACAACGTTGTATTCCAGAACATAAAGGTTGTGGA-A-G-AGGACCTCCACC  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9317935684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5