BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17730.2
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931636 jgi|Araly1|931636|scaffold_304093.1 1125 0.0
> Ahg931636 jgi|Araly1|931636|scaffold_304093.1
Length=763
Score = 1125 bits (609), Expect = 0.0
Identities = 682/717 (95%), Gaps = 6/717 (1%)
Strand=Plus/Plus
Query 173 GTTTCTGGGTTCTTAAGAATAACATGGCCTCGTCATCATCATCATCTTATAGATTCCAAT 232
||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||
Sbjct 1 GTTTCTGGGTTCTTAAGAAAAACATGG---C--C-TCATCATCATCTTATAGATTCCAAT 54
Query 233 CTGGGTCTTACCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGCATTAAAG 292
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 55 CTGGGTTTTGTCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGGATTAAAG 114
Query 293 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCT 352
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 115 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTTGGTACCATTATCTCGGCGATCTTGACCT 174
Query 353 TCTTCTTCGCACTAGTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 412
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCTTCTTCGCACTAGTGGGAACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 234
Query 413 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGTTTTCT 472
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCTGGAGCTGTTTTCT 294
Query 473 CTATCGAGGTCTTTGAATCATCTCTGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGAT 532
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 295 CTATTGAGGTCTTTGAATCATCACTTGATCTCTGGAAATCCGATGAGTCGGGTTTCGGTT 354
Query 533 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGC 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAAC 414
Query 593 GCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAAATGGGAGCTGTGGATACAGCTT 652
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 415 GCATTGGTCCTGCAATGCTAAGTGCGGTGCAAAGTCAAATGGGAGCTGTGGATGCAGCCT 474
Query 653 TTGATGATCACACAAGCCTTTTTGATACAGGAGGCTCAAAAGGATTGACAGGAGACCTTG 712
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 475 TTGATGATCACACTAGCCTCTTTGATACAGGAGGCTCAAAAGGATTAACAGGAGAACTTG 534
Query 713 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACTGATGCTTCTGAGAACA 772
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 535 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACCGATGCTCCTGAAAACA 594
Query 773 CAGACTCATGTTCTGTTTGTCTTCAGGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGC 832
|||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 GAGACCCCTGTTCTGTTTGTCTTCAGGATTTCCAGCTTGGTGAAACAGTTAGAAGCTTGC 654
Query 833 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG 889
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 655 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTCAGACACG 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5