BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17750.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906606 jgi|Araly1|906606|Al_scaffold_0003_3734 1919 0.0
Ahg906449 jgi|Araly1|906449|Al_scaffold_0003_3577 366 2e-100
> Ahg906606 jgi|Araly1|906606|Al_scaffold_0003_3734
Length=1194
Score = 1919 bits (1039), Expect = 0.0
Identities = 1146/1197 (96%), Gaps = 9/1197 (1%)
Strand=Plus/Plus
Query 1 ATGATGATTGCTCGTTTTGTGCTCAGCATTCTAATCGTAGCGGCGATAGTTTCTGGTAGT 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGATGATTGCTCGTTTTGTGCTCAGCATTCTGATCGTAGCGGCCATAGTTTCTGGTAGT 60
Query 61 GAGTTTTCTGATACTCGTGATGCAAAAGTAGAAAAAATCTTAAAGAAACTCAACAAACCT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGTTTTCTAATACTCGTGATGCAAAAGTAGAAAAAATCTTAAAGAAACTCAACAAACCT 120
Query 121 GCTCTTAAATCTATCAAGAGTCCAGATGGAGATATAATAGACTGCGTTCATATGAATAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCTTAAATCTATCAAGAGTCCAGATGGAGATATAATAGACTGCGTTCATATGAATAAT 180
Query 181 CATCCAATTTATGATCATCCTTTATTCAAAAACTACACGATTCAGATGAAACCAAGTTCT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CATCCAATTTATGATCATCCTTTATTCAAAAACTACACAATTCAGATGAAACCAAGTTCT 240
Query 241 TACCCTAAAGGTAAAAATAATGAATCTTCAGACAAAGAGAAACAAAGTGTTGTGACTCAA 300
|||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 241 TACCCTAAAGGTCAAAATAATGAATCTTCAGAGAGAGAGAAACAAAGTGTTGTGACTCAA 300
Query 301 CTATGGACAGTTAACGGGAAATGCCCCAAAAACAGTATTCCGATCAGAAGAACGAGAAGA 360
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 301 CTATGGACAGTTAACGGGAAATGTCCCGAAAACAGTATTCCGATCAGAAGAACGAGAAGA 360
Query 361 AAAGAAATTTTGCGAACCGAATATATGCAAAGATATGACAAAAAGAATCCAAACATAATA 420
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AAAGAAATTTTACGAACCAAATATATGCAAAGATACGACAAAAAGAATCCAAACATAATA 420
Query 421 AATCATCCTAAAGCATCAACTAGTAACTCCATACATGAGTACGCGCAAATCCAAGCGAAA 480
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AATCATACTAAAGCATCAACTAGTAACTCCATACATGAGTACGCCCAAATCCAAGCGAAA 480
Query 481 GGAAAGTTTCATGGAGCCCATGCGGATATAAATGTTTGGAAACCTTTTGTACAAACACCA 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 GGAAAGTTTCATGGAGCCCATGCGGATATAAATGTTTGGAAACCTTATGTACAAACACCA 540
Query 541 AAAGAGTTTAGCCTAGCACAAATGTGGGTTATGGCTGGTCCGTTTTCTGAAGTTAATAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGAGTTTAGCCTAGCACAAATGTGGGTTATGGCTGGTCCGTTTTCTGAAGTTAATAGC 600
Query 601 GTTGAAGCTGGTTGGCAGGTGTATCAAGATCGTTATGGCGATGACAACCCAAGATACTTT 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GTTGAAGCTGGTTGGCAGGTGTATCAAGATCGTTACGGCGATGACAACCCAAGATACTTT 660
Query 661 ATTTTTTGGACTGCGGATGGGTACCACTCAGGCTGTTACAATCTTGATTG-CCAAGGATT 719
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 661 ATTTTTTGGACTGCGGATGGGTACCACTCAGGCTGTTACAATCTTGATTGTCCA-GGATT 719
Query 720 TGTTCCTGTCAGCCAAAAATTTGCCCTTGGTGCAGCCGTTAGCAATGTTTCCACCTTCGA 779
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||
Sbjct 720 TGTTCCTGTCAGCCAAAACTTTGCCCTAGGTGCAGCCGTTAGTAATGTTTCCACCTT-GA 778
Query 780 -TGGTCAACAATACCATATTTCCACAACTATATGGAAGGATCCAAATTCAGGGAATTGGT 838
||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 779 ATGGTCAACAATACCACATTCCCACAACTATATGGAAGGATCCACATACAGGGAATTGGT 838
Query 839 GGTTAAAATTTGGTGA---TGAATTTGTCGGATATTGGCCTTCCATATTGTTCAACCATC 895
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGTTAAAATTTAATGACCATGAATTTGTCGGATATTGGCCTTCCATATTGTTCAACCATC 898
Query 896 TAAAAGATGGTGCGACAGAAATTCAGTGGGGAGGTGAAATAATAAATTTTAAAGATGGTG 955
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 TAAAAGATGGTGCGACCGAAATTCAGTGGGGAGGTGAAATAATAAACTTTAAAGATGGTT 958
Query 956 CACTACACACCACGACGAGAATGGGGAGTGGACATTTTGCAGAGTCTGGATATCAAAAAG 1015
|||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 959 CACTTCACACGACGACGCGAATGGGGAGTGGACATTTTGCAGAGGAGGGATATCAAAAAG 1018
Query 1016 CAAGTTATTTCAAGGATGTTGAGATAATTGATGAACGTGATATTCATAGTAGTCCTAAAG 1075
| |||||||||||| || |||||||||||||||||| ||||||||||| || |||||||
Sbjct 1019 CTAGTTATTTCAAGAATCTTGAGATAATTGATGAACATGATATTCATAATAAACCTAAAG 1078
Query 1076 AAGGTTATTCTTATATGACGCAAGAGAGTTGTTATAACATCAGGTCTGGCTATGCTAA-A 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 AAGGTTATTCTTATATGACGCAAGAGAGTTGTTATAACATCAGGTCTGGCTATGCTAAGA 1138
Query 1135 GTATGGGGAGTTTATTTTTATTATGGTGGCCCAGGTCGAAATCTGAATTGTAAATAA 1191
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 -TATGGGGAGTTTATTTTTATTATGGTGGCCCAGGTCGAAATCAGAATTGTAAATAA 1194
> Ahg906449 jgi|Araly1|906449|Al_scaffold_0003_3577
Length=1239
Score = 366 bits (198), Expect = 2e-100
Identities = 892/1208 (74%), Gaps = 123/1208 (10%)
Strand=Plus/Plus
Query 45 GATAGTTTCTGGTAGTGAGTTTTCTGATACTCGTGATGC-AAAAGTAGAA-AAAATCTTA 102
|||||| | || || |||| |||| ||||||||||||| ||| || || | || |
Sbjct 60 GATAGTCACCGGAAGCGAGTCTTCTAATACTCGTGATGCTGAAA-TA-AATCGACTCATG 117
Query 103 AAGAAACTCAACAAACCTGCTCTTAAATCTATCAAGAGTCCAGATGGAGATATAATAGAC 162
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct 118 AAGAAACTCAACAAACCTTTTCTTAAATCCATCAAGAGTCCAGATGGAGATATCATAGAT 177
Query 163 TGCGTTCATATGAATAATCATCCAATTTATGATCATCCTTTATTCAAAAACTACACGATT 222
|| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 178 TGTGTTCATATGAAAAATCATCCAATTTATGATCATCCTTTATTCAAAAACCACACCATT 237
Query 223 CAGATGAAACCAAGTTCTTACCCTA-AAGG-TAAA--AATAATGAATCTTCAGACAAAGA 278
||||||| ||||| ||||||||| | |||| | | ||||| || | | |||| || ||
Sbjct 238 CAGATGAGACCAACTTCTTACCC-AGAAGGATGGAGCAATAAAGA-T-T-CAGATAATGA 293
Query 279 GAAACA-AAGTGTTGTGACTCAACTATGGACAGTTAACGGGAAATGCCCCAAAAACAGTA 337
||||| || | | || ||||||| |||||| | || || ||||| || ||||| ||||
Sbjct 294 AAAACACAA-TATGGTTCCTCAACTTTGGACAATCAATGGAAAATGTCCAAAAAATAGTA 352
Query 338 TTCCGATCAGAAGAACGAGAAGAA-AAGAAATTTTGCGAACCGAATATAT-GCAAAGATA 395
||||||||||||||||||||| || |||| ||||| ||| | ||| || | |||| |
Sbjct 353 TTCCGATCAGAAGAACGAGAA-AAGAAGATATTTTACGAGCAAAATCCATTG-AAAGGTT 410
Query 396 TG-ACAAAAAGAATCCAAACA-TAATAAATCATCCTAAA-GCATCAACTAGT--AACTC- 449
|| | ||||||| ||| |||| || | |||| | |||| | | |||| | | ||||
Sbjct 411 TGGAAAAAAAGA-TCCCAACAATA-TCCATCAACATAAACG-ACCAACCAATCCAACTAA 467
Query 450 C-A---T--ACATGAGTACGCGCAAA-TCCAAGCGAAAGGAAAGT-T--TC-A--TG-G- 494
| | | ||||||||| || || | | ||| | ||| ||| | | || | | |
Sbjct 468 CGACGGTGTACATGAGTATGC-CATACTTAAAGTGGAAGTAAATTCTCCTCGAGCTATGT 526
Query 495 ---A-G---CCCATGCGGATATAAATGTTTGGAAACCTTTTGTACAA-ACACCAAAAGAG 546
| | |||| | ||||||||| ||||| |||| ||||||| | || ||||||
Sbjct 527 TTTATGGAACCCAAACTTTTATAAATGTGTGGAAGCCTTATGTACAACATAC-AAAAGAA 585
Query 547 TTTAGCCTAGCACAAATGTGGGT-TATGGCTGGTCCGTT-T--T-CTGAAGTT-AATAGC 600
|||||| |||||||||| ||| | | |||||| ||| | | || || || || | |
Sbjct 586 TTTAGCTTAGCACAAATATGGATGTC-GGCTGGAA-GTTATAGTACTCAACTTGAA-ACC 642
Query 601 GTTGAAGCTGGTTGGCAGGTGTATCAA-G-ATCGTTATGGCGATGAC-AACCCAAGATAC 657
||||||||||||||||||||| | | | | | |||| ||| || ||||| |||||
Sbjct 643 ATTGAAGCTGGTTGGCAGGTGT-TGACTGCA-CTTTATAATGAT-ACTAACCCTCGATAC 699
Query 658 TTTATTTTTTGGACTGCGGATGGGTACC-ACT-CA-GGCTGTTACAAT-CTTGATT-GCC 712
||| | | ||||||| ||| || || || || || || ||| || ||| |||
Sbjct 700 TTTGTCTATTGGACTAATGATTCATATATACAACATGGTTGCTATAATACT--ATTTGCC 757
Query 713 AAGGATTTGTTCCTGTCAGCCAAAAATTTGCCCTTGGTGCAGCCGTTA--GCAATGTTTC 770
|| |||||| ||||| |||| |||||| || || || |||||| | || |||||
Sbjct 758 CCGGCTTTGTTGTTGTCAACCAAGCATTTGCTCTAGGCGCGGCCGTTCCTG-AA-GTTTC 815
Query 771 CA-CCTTCGATGGTCAACAATACCATATTTCCACAACTATATGGAAGGATCCAAA-TTCA 828
| || | ||||||| ||||||| | |||| ||||| |||||||||||| || | ||||
Sbjct 816 TATCCGT-GATGGTCTACAATACGAAATTTTCACAAGTATATGGAAGGA-CCGTAGTTCA 873
Query 829 GGGAATTGGTGGTTAAAATTTGGTG---ATG-AATTTGTCGGATATTGGCCTTCCATATT 884
|||||||||||||| | ||||||| ||| |||| ||||| ||||||||||| ||||
Sbjct 874 GGGAATTGGTGGTTGAGATTTGGTACTCATGTAATT-GTCGGGTATTGGCCTTCTTTATT 932
Query 885 GTTCAACCATCTAAAAGAT-GGTGCGACAGAAATTCAGTGGGGAGGTGAAATAATAAATT 943
|||||| | | || | || |||||||| ||| || | |||||||| |||||| ||||||
Sbjct 933 GTTCAATCGTTTACGA-ATTGGTGCGACCGAAGTTGAATGGGGAGGCGAAATAGTAAATT 991
Query 944 TTAAAG-ATGGTGCA-CTA-CACACCACGACGAGA-ATGGGGAGTGGA-CATTTTGCAG- 997
| |||| | | || | | ||||| | || | | ||||| ||||| ||||| |||
Sbjct 992 T-AAAGGA-GAA-CAACCAACACACGTCAAC-ACACATGGGAAGTGGGTCATTT-GCAAT 1046
Query 998 AGTCTGGATATCA-AAAAGCAAGTTATTTCAAGGA-TGTTGA-GATAATTGATGAACGTG 1054
| ||||||| | |||||| |||||||| | ||| | || | ||| ||||||| |
Sbjct 1047 AAA-TGGATAT-AGAAAAGCTAGTTATTTTA-GGAATATTTTCG-TAACTGATGAAAATA 1102
Query 1055 ATATT-C-ATAGTAGTCCTAAAGAAGGTTATTCTT-ATATGA--CGCAAGAGAGTTGTTA 1109
||||| | | || | ||| | ||||| |||| || || || |||| ||||||||
Sbjct 1103 ATATTACGA-AGAAA-CCT---GTAGGTTCTTCTACATTTGTGTCGGAAGAAAGTTGTTA 1157
Query 1110 TAACATCAGGTCTGGCTA-TGCTA-AAGTATGGGGA-GTTTATTTTTATTATGGTGGCCC 1166
| |||| |||| | || | || | ||| |||||| |||| |||| | |||||||| ||
Sbjct 1158 TGACATAAGGTATCGC-ACTGA-ACAAGCCTGGGGAAGTTTCTTTT-ACTATGGTGGTCC 1214
Query 1167 AGGTCGAA 1174
|||||||
Sbjct 1215 TGGTCGAA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5