BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17760.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480670 jgi|Araly1|480670|fgenesh2_kg.3__3371__AT2G17760.1 3155 0.0
> Ahg480670 jgi|Araly1|480670|fgenesh2_kg.3__3371__AT2G17760.1
Length=1886
Score = 3155 bits (1708), Expect = 0.0
Identities = 1829/1888 (97%), Gaps = 6/1888 (0%)
Strand=Plus/Plus
Query 1 CTTTTGCCTAATTTCTCGGTTTCATTTCCAAAATTCTC-TTTTGATTCTTTCTTACTCTT 59
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 CTTTTGCCTAATTTCTCGGTTTCATTTACAAAATTCTCATTTTGATTCTTTCTTACTCTT 60
Query 60 TCGCTAGAGAAGATTTAGACTGGGTTTTGAGTATTTCTCGGAAATTTTCGTGtttttttt 119
| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 61 TAGCTAGAGAAGATTTATACTGGGTTTTGAGTATTTCTCGGAAAGTTTCGTTTTTTTTTT 120
Query 120 ttCTGGGAAAGTTTCCGAGATCTCGGTGGAGTACtttttttGGCGACGAACCAGTATGGT 179
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 121 TTCTGGGAAAGTTTCCGAGATCTCGGCGGAGTACTTTTTTTGACGACGAACCAGTATGGT 180
Query 180 TTGGTACTCAAGCTGTAGAATTTTGTTTCTGGGTCTGCTTATTTTGTTGGCTTCGAGCTG 239
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 181 TTGGTACTCAAGCTGGAGAATTTTGTTTCTGGGTCTGCTTATTTTGCTAGCTTCGAGCTG 240
Query 240 GGTTTTGGATAGATGCGAGGGATTTGGTGAATTTGGGTTTGAATTTCATCATCGTTTCTC 299
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTTTGGAAAGATGCGAAGGATTTGGTGAATTTGGGTTTGAATTTCATCATCGTTTCTC 300
Query 300 CGATCAGGTTGTTGGGGTTTTGCCTGGAGATGGTTTACCTAATCGAGATTCTTCTAAGTA 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGATCAGGTTGTTGGGGTTTTACCTGGAGATGGTTTACCTAATCGAGATTCTTCTAAGTA 360
Query 360 TTATAGAGTGATGGCTCATCGTGATCGGTTAATTAGAGGTCGTCGACTTGCAAATGAAGA 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 361 TTATAGAGTGATGGCTCATCGTGATCGGTTAATCAGAGGTCGTCGACTTGCAAACGAAGA 420
Query 420 TCAATCACTCGTTACTTTCTCTGACGGCAACGAAACTGTTCGTGTTGATGCCCTAGGATT 479
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TCAATCACTTGTTACTTTCTCTGACGGCAACGAAACTATTCGTGTTGATGCCCTAGGATT 480
Query 480 TTTGCATTACGCTAATGTGACTGTTGGGACGCCGTCTGATTGGTTTATGGTTGCTTTAGA 539
||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 481 TTTGCATTATGCTAATGTGACGGTTGGGACGCCGTCTGATTGGTTTCTGGTTGCTTTAGA 540
Query 540 TACTGGAAGTGACTTGTTTTGGTTGCCCTGTGACTGCACCAATTGTGTTCGTGAATTGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACTGGAAGTGACTTGTTTTGGTTGCCCTGTGACTGCACCAATTGTGTTCGTGAATTGAA 600
Query 600 AGCACCTGGTGGCTCGAGTTTGGACCTTAATATTTATAGCCCTAATGCTTCATCGACAAG 659
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 601 AGCACCTGGTGGCTCGAGTTTGGACCTCAATATTTATAGCCCTAATGCATCATCGACAAG 660
Query 660 TACTAAAGTTCCTTGTAATAGCACATTATGTACAAGAGGTGATCGATGCGCTTCCCCTGA 719
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 TACTAAAGTTCCTTGTAATAGCACATTATGTACAAGAGGTGATCAATGCGCTTCCCCTGA 720
Query 720 AAGTGATTGCCCATACCAGATCCGGTATCTTTCTAATGGTACCTCTTCTACTGGAGTCTT 779
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 721 AAGTAATTGCCCATACCAGATCCGGTATCTTTCTAATGGTACCTCGTCTACCGGAGTCTT 780
Query 780 GGTGGAGGATGTACTTCACTTAGTTTCAAATGACAAAAGTTCCAAAGCTATTCCCGCTCG 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 GGTGGAGGATGTACTTCACTTAGTTTCAAATGACAAAAGTTCCAAAGCTATTCCAGCTCG 840
Query 840 TGTTACTTTTGGATGTGGTCAAGTTCAGACCGGTGTATTCCATGATGGTGCAGCTCCAAA 899
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 AGTTACTTTGGGATGTGGTCAAGTTCAGACTGGTGTATTCCATGATGGTGCAGCTCCAAA 900
Query 900 TGGTCTTTTCGGGCTTGGCTTAGAAGACATATCGGTGCCTAGTGTACTAGCAAAAGAAGG 959
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 901 TGGTCTTTTCGGGCTTGGCTTAGAAGACATATCGGTTCCTAGCGTACTAGCAAAAGAAGG 960
Query 960 AATTGCAGCAAACTCATTCTCAATGTGTTTTGGGAACGATGGAGCTGGTAGGATCAGTTT 1019
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATTGCAGCTAACTCATTCTCAATGTGTTTTGGGAACGATGGAGCTGGTAGGATCAGTTT 1020
Query 1020 TGGAGATAAAGGTAGCGTAGACCAACGGGAAACACCATTGAACATAAGACAACCACATCC 1079
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGGGATAAAGGTAGCGTAGACCAGCGGGAAACACCATTGAACATAAGACAACCACATCC 1080
Query 1080 TACTTACAATATCACCGTCACTAAAATAAGCGTTGGAGGAAATACCGGCGATCTTGAATT 1139
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TACTTACAATATCACCATCACTAAAATAAGCGTTGGAGGAAATACCGGCGATCTTGAATT 1140
Query 1140 TGATGCTGTTTTTGACTCTGGAACCTCGTTCACTTATCTGACTGATGCAGCTTACACCCT 1199
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 TGATGCTGTTTTCGACTCTGGAACCTCGTTCACTTATCTGACTGATGCGGCTTACACCCT 1200
Query 1200 TATTTCAGAAAGCTTTAATTCTCTAGCTCTGGACAAACGTTATCAAACAACTGATTCTGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1201 TATTTCAGAAAGCTTTAATTCTCTAGCTCTGGACAAACGTTATCAAACAACTGATTCCGA 1260
Query 1260 GTTGCCTTTTGAGTACTGTTATGCATTAAGCCCAAACAAAGACAGCTTCCAGTATCCAGC 1319
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTTACCTTTTGAGTACTGTTATGCATTAAGCCCAAACAAAGACAGCTTCCAGTATCCAGC 1320
Query 1320 TGTGAATCTGACAATGAAAGGCGGGAGCTCGTATCCCGTTTATCACCCGTTAGTAGTAAT 1379
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1321 TGTGAATCTGACAATGAAAGGCGGGAGCTCATATCCCGTTTATCACCCGTTAGTAGTAAT 1380
Query 1380 CCCCATGAAGGACACAGATGTCTACTGTTTAGCCAT-TATGAAGATAGAAGACATTAGCA 1438
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1381 CCCCATGAAGGACACAGATGTCTACTGTTTAGCCATCT-TGAAGATAGAAGACATTAGCA 1439
Query 1439 TCATTGGACAGAACTTCATGACTGGCTATCGCGTTGTCTTTGATCGTGAGAAACTGATTC 1498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TCATTGGACAGAATTTCATGACTGGCTATCGCGTTGTCTTTGATCGTGAGAAACTGATTC 1499
Query 1499 TGGGGTGGAAAGAATCTGATTGTTACACCGGTGAGACATCGGCTCGGACGCTTCCATCGA 1558
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1500 TGGGGTGGAAAGAATCTGATTGTTACACCGGTGAGACCTCGGCTCGGACGCTTCCATCGA 1559
Query 1559 ACCGTTCCTCCTCCTCGGCTAGACCGCCAGCTTCTTCGTTTGACCCAGAGGCGACAAACA 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 ACCGTTCCTCCTCCTCGGCTAGACCGCCAGCTTCTTCGTTTGACCCAGAGGCGACAAACA 1619
Query 1619 TACCATCTCAAAGACCAAACACGTCGACGACTTCTGCTGCTTATTCTCTCTCTATCTCAC 1678
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1620 TACCATCTCAAAGACCAAACACGTCGACTTCTTCTGCTGCTTATTCTCTCTCTATCTCAC 1679
Query 1679 TTTCATTGTTCTTCTTCTCAATTTTGGCCATCCTTTAATTATTACACGTATATATTTAGC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TTTCATTGTTCTTCTTCTCAATTTTGGCCATCCTTTAATTATTACACGTATATATTTAGC 1739
Query 1739 CATCAATTTGTATTCTTTAGAAGATAATTGGGTTAAATCACCAAAAACATATT--ACACT 1796
||| ||||||||||||||||||||| |||||||| |||||||||||| ||||| |||||
Sbjct 1740 CATGAATTTGTATTCTTTAGAAGATTATTGGGTTCAATCACCAAAAA-ATATTGCACACT 1798
Query 1797 ACAGTTGTATTACTTTTTTCTATGTTGTATATGATAATTATTTTTTAACAATTATATACT 1856
||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 1799 ACAGTTGTATTTTTTTTTTCTATGTTGTATATGATATTTAATTTTTAACAATTATATATT 1858
Query 1857 AGTTATTTGGTGAAGTTTTGTTGTAGAT 1884
||||||||||||||||||||||||||||
Sbjct 1859 AGTTATTTGGTGAAGTTTTGTTGTAGAT 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5