BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17770.2
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343397 jgi|Araly1|343397|fgenesh1_pg.C_scaffold_3003160 712 0.0
Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453 235 4e-61
> Ahg343397 jgi|Araly1|343397|fgenesh1_pg.C_scaffold_3003160
Length=681
Score = 712 bits (385), Expect = 0.0
Identities = 481/523 (92%), Gaps = 23/523 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGTATGGAAAGAAATCAACCTTGGTTCACTTCACTACCATCGGCAACTAAAC 60
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGAAGTATGGAAAGAAATCAACAATGGTTCACTTCACTACCATCGCCAACTAAAC 60
Query 61 ATTGGTCATGAACCAATGTTAAAGAACCAAAACCCTAATAACTCCATCTTTCAAGATTTC 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATTGGTCATGAACCAATGTTAAAGAACCAAAACCCTAATAACTCCACCTTTCAAGATTTC 120
Query 121 CTCAACATGCCTCTGAATCAaccaccaccaccaccaccaccaccTTCCTCTTCCACCATT 180
|||||||||||||||||| || | || ||||||||| ||||||||||||
Sbjct 121 CTCAACATGCCTCTGAAT----------CA--A-CA--ACCACCTTCTTCTTCCACCATT 165
Query 181 GTCACTGCTCTCTATGGCTCTCTGCCTCTTCCGCCTCCTGCCACTGTCCTCAGCTTAAAC 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 166 GTCACTGCTCTCTATGGCTCTCTGCCTCTTCCTCCTCCTGCCACTGTCCTCAGCTTGAAC 225
Query 241 TCCGGTGTTGGATTCGAGTTTCTTGATACCACAGAAAATCTTCTTGCTTCTAACCCTCGC 300
||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 226 TCCGGCGTTGGATTCGAGTTTCTTGATACCACAGAAACTCTTGTTGCTTCTAACCCTCAC 285
Query 301 TCCTTTGAGGAATCTGCAA-AGTTTGGTTGTCTTGGTAAGAAAAGAGGCCAAGATTCTGA 359
||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 286 TCCTTTGAGGAATCTGCAAGAG-TTGGTTGTCTTGGTAAGAAAAGAAGCCAAGATCCTGA 344
Query 360 TGATACTAGAGGAGACAGAAGGTATAAGCGTATGATCAAGAACAGAGAATCTGCTGCTCG 419
||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 345 TGAAAGTAGAGGAGACAGAAGGTATAAGCGAATGATCAAGAACAGAGAATCTGCTGCTCG 404
Query 420 TTCAAGGGCTAGG--A-A-GCA-G-GCATATACAAACGAACTTGAGCTTGAAATTGCTCA 473
||||||||||||| | | | | | ||||| |||||||||||||||||||||||||||||
Sbjct 405 TTCAAGGGCTAGGAAACAGGAATGTGCATACACAAACGAACTTGAGCTTGAAATTGCTCA 464
Query 474 CTTGCAGACAGAGAATGCAAGACTCAAGATACAACAAGAGCAG 516
||||||||||||||||||||||||||||||||||||||| |||
Sbjct 465 CTTGCAGACAGAGAATGCAAGACTCAAGATACAACAAGACCAG 507
> Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453
Length=849
Score = 235 bits (127), Expect = 4e-61
Identities = 224/269 (83%), Gaps = 14/269 (5%)
Strand=Plus/Plus
Query 327 TTGTCTTGGTAAGAAAAGAGGCCAAGA-TTC--TGATGATACTAGAGGAGA-CAGAAGGT 382
|||| |||||||||||||||||||||| | | ||| | | | || ||| | | ||||
Sbjct 588 TTGTTTTGGTAAGAAAAGAGGCCAAGAGTCCAATGAAGGTTC-AG-GGA-ATC-GAAGAC 643
Query 383 ATAAGCGTATGATCAAGAACAGAGAATCTGCTGCTCGTTCAAGGGCTAGGAAGCAGGCAT 442
||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||| |
Sbjct 644 ATAAGCGTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGAGCTAGGAAACAGGCTT 703
Query 443 ATACAAACGAACTT-GAGCTTGAAATTGCTCACTTGCAGACAGAGAATGCAAGACTCAAG 501
|||||||||| || || |||||| |||||||| ||||| |||| |||||||||||||||
Sbjct 704 ATACAAACGAG-TTAGAACTTGAAGTTGCTCACCTGCAGGCAGAAAATGCAAGACTCAAG 762
Query 502 ATACAACAAGAGCAGCTGAAAATAGCCGAAGCAACTCAA-AACC-AAGTAAAGAAAACAC 559
| |||||| || ||| ||| ||| || | ||||| ||| |||| || |||||| ||||
Sbjct 763 AGACAACAGGATCAGTTGAGAATGGCTGCAGCAATTCAGCAACCCAA--AAAGAACACAC 820
Query 560 TACAACGGTCTTCCACAGCTCCATTTTGA 588
| |||||||||||||||||||||||||||
Sbjct 821 TTCAACGGTCTTCCACAGCTCCATTTTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5