BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17780.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480672 jgi|Araly1|480672|fgenesh2_kg.3__3373__AT2G17780.1 2222 0.0
Ahg491044 jgi|Araly1|491044|fgenesh2_kg.7__477__AT4G35920.1 767 0.0
> Ahg480672 jgi|Araly1|480672|fgenesh2_kg.3__3373__AT2G17780.1
Length=1484
Score = 2222 bits (1203), Expect = 0.0
Identities = 1399/1493 (94%), Gaps = 16/1493 (1%)
Strand=Plus/Plus
Query 151 AGGAAGAGAAATGGCTAATTCATGGGATCAGTTAGGAGAAATTGCGTCAGTGGCTCAGCT 210
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1 AGGAAGAGAAATGGCTAATTCATGGGATCAGTTAGGAGAAATTCCGTCAGTAGCTCAGCT 60
Query 211 TACAGGCATAGACGCTCTGAAACTGATTGGAATGATAGTAAACGCTGCGAATACAGCTCG 270
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACAGGCATAGACGCCCTAAAACTGATTGGAATGATAGTAAACGCTGCGAATACAGCTCG 120
Query 271 AATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTGCT 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTGCT 180
Query 331 AGAGCAGATTAAAAACTCTGAGATGAATCAACGTTCAGAGATTCTTGAGCCGCTTCAAGG 390
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAGCAGATAAAAAACTCTGAGATGAATCAACGTTCAGAGATTCTTGAGCCGCTTCAAGG 240
Query 391 ACTTGATGATGCTCTTAGAAGATCTTACATTTTAGTCAAAAGTTGTCAAGAAAAAAGTTA 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACTTGATGATGCTCTTAGAAGATCTTACATTTTAGTCAAAAGTTGTCAAGAAAAGAGTTA 300
Query 451 TCTTTACTTGTTGGCTATGGGCTGGAACATTGTTAACCAGTTTGAAAAAGCTCAGAATGA 510
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 301 TCTTTACTTGTTGGCTATGGGATGGAACATTGTTAACCAGTTTGAAAAAGCTCAGACCGA 360
Query 511 GATTGATCTGTTTCTCAAGATCGTTCCACTAATAAATATGGCGGATAATGCTCGGATTCG 570
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 361 GATTGATCTGTTTCTCAAGATCGTTCCACTCATAAATATGGCGGATAATGCTCGCATTCG 420
Query 571 GGAGAGGCTAGAAGCTATTGAACGTGATCAGCGTGAGTATACTCTTGATGAAGAGGATAG 630
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GGAGAGGTTAGAAGCTATTGAACGTGATCAGCGTGAGTACACTCTTGATGAAGAGGATAA 480
Query 631 AAAGGTGCAAGATGTTATTTTGAAACAAGAATCTACTAGAGAAGCTGCTACATCGGTTTT 690
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 481 AAAGGTGCAAGATGTTATTTTGAAACAAGAATCCACTAGAGAAGCAGCTACATCGGTTTT 540
Query 691 AAAGAAGACGCTCTCTCGTTCATACCCGAACATGGGGTTCTGCGAAGCGCTTAAAACCGA 750
|||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 541 AAAGAAAACGCTTTCTCGTTCCTACCCGAACATGGGGTTCTGCCAAGCGCTTAAAACAGA 600
Query 751 GGAGGAGAAACTGCAACTTGAGTTGCAACGTTCGCGGGCGCGGTATGATGCTGATCAATG 810
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 601 GGAGGAGAAACTGCAACTTGAGTTACATCGTTCGCGGGCGCGGTATGATGCTGATCAATG 660
Query 811 TGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTACT---GTTGAACCTAA 867
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 661 TGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTTCTTCTGTTGAACCTAA 720
Query 868 TCTTGAAAAGGTGTTGACTAAGAAAGAAGAGCTTACCTCTAGCAAGAAGAGAGATGATTT 927
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TCTTGAAAAGGTTTTGACTAAGAAAGAAGAGCTTACCTCTAGCAAGAAGAAAGATGATTT 780
Query 928 GTATGACACGGATAGTAG-TAG-TATTCGAGCAGATTCAAGATCAACGTCTTATGTTTCA 985
|||||||||||||||| | | || | | | || | |||||||||||||||||||||
Sbjct 781 GTATGACACGGATAGTTGGTCTCTAAT-G-GTTGAATGTAGATCAACGTCTTATGTTTCA 838
Query 986 TCCGGACATGAACTACTTTCGGGAAGATCATTGCAACACCGTGGAAATTGGCACGCCGAC 1045
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 839 TCCGGACATGAACTACTTTCGGGAAGATCATCGCAACACCATGAAAATTGGCACGCCGAC 898
Query 1046 TTGCTGGATTGTTGTTCAGAACCTTGTCTTTGCTTGAAGACACTCTTTTTCCCCTGTGGT 1105
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 899 TTGCTGGATTGTTGTTCAGAACCTTGTCTTTGCTTCAAGACATTCTTTTTCCCGTGTGGT 958
Query 1106 ACATTGGCAAAGATTTCCACTGTGGCAACT-AGTAGGCAAATCTCTTCAACTGAAGTGTG 1164
||||||||||||||||| ||| |||||||| | |||||||||||||||||||||| |||
Sbjct 959 ACATTGGCAAAGATTTCTACTATGGCAACTGAC-AGGCAAATCTCTTCAACTGAAGCGTG 1017
Query 1165 TAAGAACCTAATCGTGTATTCTTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAG 1224
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TAAGAACCTAATGGTGTATTCTTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAG 1077
Query 1225 GAAGAAGCTTCGAAAGACACTGAACATAACGGGAGGGTGCATTGACGACTTTTTGTCACA 1284
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAAGAAGCTTCGAAAGACTCTGAACATAACGGGAGGGTGCATTGACGACTTTTTGTCACA 1137
Query 1285 TCTAATGTGTTGTTGTTGTGCCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCATCGAGC 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1138 TCTAATGTGTTGTTGTTGTGCCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCGTGGAGT 1197
Query 1345 TTCTTACGGTACAGAGAAGAGTAATAAGGAAATGAGTCCACCAACACCTCAGTTTATGGA 1404
||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 TTCTTACGGTACAGAGATGAATAATAAGGAAATGAGTCCACCAACACCTCAGTTCATGGA 1257
Query 1405 AGAATGA-GACTTGTCCAGCACGAAACAGAACCCAGTTATTATGATGAAATGAATCTTCT 1463
||||||| | |||||||| |||||||||||| |||| ||| |||||||||||||||||
Sbjct 1258 AGAATGATG-CTTGTCCAACACGAAACAGAATTGAGTTTTTACGATGAAATGAATCTTCT 1316
Query 1464 TATTTCATTGTTGACATTAAGATTTAACGTAAATTAGTTTGGGAAAAATACTCCATAGAG 1523
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1317 AATTTCATTGTTGACATCGCGATTTAACGTAAATTAGTTTTGGAAAAATACTCCATAGAG 1376
Query 1524 ATTCTAAAACCTTCCTTATTCTATACTAGATGCAAATAGGTGACAAATCATTGTTAACAA 1583
||| || ||| ||||||| ||||||||| |||||| ||||| |||| ||| ||| ||||
Sbjct 1377 ATTTTAGAACGTTCCTTACTCTATACTACATGCAATTAGGTAACAACTCAATGTAAACAG 1436
Query 1584 TAGACCTTTTGAAGAAGAAAAACAAACATTTGTGGTTGAATTTGTAAGTTATA 1636
|||||||||||||||| |||| || ||| ||||||||||| |||||||||
Sbjct 1437 TAGACCTTTTGAAGAA-AAAATCA----TTTATGGTTGAATTTATAAGTTATA 1484
> Ahg491044 jgi|Araly1|491044|fgenesh2_kg.7__477__AT4G35920.1
Length=1926
Score = 767 bits (415), Expect = 0.0
Identities = 991/1260 (79%), Gaps = 76/1260 (6%)
Strand=Plus/Plus
Query 153 GAAGAGAAATGGCTA-ATTCATGGGATCAGT-TAGGAGAAATTGCGTCAGTGGCTCAGCT 210
|||| |||||| | | ||||||||||| || | ||||| || ||||||||||| |||||
Sbjct 410 GAAG-GAAATGTC-ACATTCATGGGAT-GGTCTTGGAGAGATCGCGTCAGTGGCGCAGCT 466
Query 211 TACAGGCATAGACGCTC-TGAAACTGATTGGAATGATAG-TAAACGCTGCGAATACAGCT 268
|| || |||| || | | || ||||||| | |||| |||| ||||| ||||| |||
Sbjct 467 CACTGGTTTAGATGC-CGTCAAGTTGATTGGCCTTATAGTTAAA-GCTGCCAATACTGCT 524
Query 269 CGAATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTG 328
| |||||||||||||||||||| ||||||||||| ||||| || ||||| | ||||||
Sbjct 525 TGGATGCACAAGAAGAATTGTCGCCAATTCGCTCAACATCTCAAACTCATTGGGAATTTG 584
Query 329 CTAGAGCAGATTAAAAACTCTGAGATGAATCAACGT-T-CAGAGATTCTTGAGCCGCTTC 386
|| |||||| | || | |||||||||||| || || | |||||| || ||||| | ||
Sbjct 585 CTTGAGCAGCTGAAGATCTCTGAGATGAA-GAA-GTATCCAGAGACTCGAGAGCCTC-TC 641
Query 387 -AAGGACTTGATGATGCTCTT-AGAAGATCTTACATTTTAGTCAAAAGTTGTCA-AGAAA 443
|||| || || |||||| || || || |||||| || | ||||| || ||| | ||
Sbjct 642 GAAGGGCTCGAGGATGCT-TTGAGGAGGTCTTACCTTCTGGTCAATAGCTGT-AGGGACC 699
Query 444 AAAGTTATCTTTACTTGTTGGCTATGGGCTGGAACATTGTTAACCAGTTTGA-AAAAGC- 501
|| ||||||||||||||||||||||| |||||||||||| ||||| || | ||| |
Sbjct 700 GGAGCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAG-TTCAGGAAA-CA 757
Query 502 TCAGAATGAGATTGATCTG-TTTCTCAAGATCGTTCCACTAATAAATATGGCGGATAATG 560
|||| |||||||||||| | ||||| |||||| | || || || | | ||| |||||| |
Sbjct 758 TCAGGATGAGATTGATC-GTTTTCTTAAGATCATACCTCTCATCACTTTGGTGGATAACG 816
Query 561 CTCGGATTCGGGAGAGGCTAGAAG-CTATTGAACGTGATCAGCGTGAGTATACTCTTGAT 619
|||| |||||||||||| | | || |||||| ||||||||||||||||| ||||| |||
Sbjct 817 CTCGCATTCGGGAGAGGTTTG-AGTATATTGACCGTGATCAGCGTGAGTACACTCTGGAT 875
Query 620 GAAGAGGATAGAAAGGTGCAAGATGTTATTTTGAAACAAGAATCTACTAGAGAAGCTGCT 679
|||||||||||| | ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 876 GAAGAGGATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGC- 934
Query 680 ACATCGGTTTTAAAGAAGACGCTCTCTCGTTCATACCCGAACATGGGGTTCTGCGAAGCG 739
| || || | |||||||| |||||| | |||||||| ||| || | ||||| |||||
Sbjct 935 A--TCAGTGCTGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCT 992
Query 740 CTTAAAACCGAGGAGGAGAAACTGCAACTTGAG-TTGCAACGTTCGCGGGCGCGGTATGA 798
|| ||||| || | ||||||||||| ||||| || || ||||||| || || |||||
Sbjct 993 CTCAAAACAGAAAACGAGAAACTGCAGCTTGAACTT-CAGCGTTCGCAGGAGCATTATGA 1051
Query 799 TGCT-GATCAATGTGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTACTG 857
|| | | ||| |||||||| || || ||||| |||| |||||||||| |||||||| |||
Sbjct 1052 TG-TAGCTCAGTGTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTG 1110
Query 858 TTGAACCTAA-TCTTGAAAAGGTGTTGACTAAGAAAG-----AA-------GAGCTTACC 904
|||||||| | ||| || |||| | |||| ||||||| || |||| || |
Sbjct 1111 TTGAACCTGACTCT-GAGAAGGAGCTGACAAAGAAAGCTTCGAAAAAATCTGAGCGTAGC 1169
Query 905 TCTAGCAAGAAGAGAGA-TGATTTGTATGAC-ACGGAT------A-GTA--GTAGTATTC 953
|| |||| ||||| ||| | ||| ||||||| | | || | | | | |||| ||
Sbjct 1170 TCAAGCATGAAGACAGAAT-ATTCGTATGACGAAG-ATTCTCCCAAGAAAAGCAGTAGTC 1227
Query 954 GAGCAGATTCAAGATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGAT 1013
| |||| ||| ||||| || ||| |||||||||| || ||||| || ||||| |||||
Sbjct 1228 GTGCAGCTTCCAGATCCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAG 1287
Query 1014 CATT---G---CAACACCGTGGA-AATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAA 1066
||| | ||||||| || | ||| |||| ||||||| || | |||||| || |||
Sbjct 1288 CATCACAGGTACAACACCATGAAGAAT-GGCATACCGACTTACTAGCTTGTTGCTCGGAA 1346
Query 1067 CCTTGTCTTTGCTTGAAGACACTCTTTTTCCCCTGTGGTACATTGGCAAAGATTTCCACT 1126
|||| |||||||||||||||| |||||||||| |||||||| |||||||||||| |||||
Sbjct 1347 CCTTCTCTTTGCTTGAAGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACT 1406
Query 1127 GTGGCAACTAGTAGGCAAATCTCTTCAACTGAAGTGTGTAA-GAACCTAATCGTGTATTC 1185
| ||| ||| ||||| ||||||||| |||||| ||||| || | |||| | ||||||
Sbjct 1407 GCAGCATCTAACAGGCACATCTCTTCAGCTGAAGCATGTAATGAGC-TAATGGCGTATTC 1465
Query 1186 TTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAGGAAGAAGCTTCGAAAGACACT 1245
||||||||| || || || ||||||||||| ||| |||||| ||| || || ||||||||
Sbjct 1466 TTTGATACTTTCGTGTTGCTGCTATACTTGTTGCGTAAGGAGGAAACTCCGGAAGACACT 1525
Query 1246 GAACATAACGGGAGGGTGCATTGACGACTTTT-TGTCACATCTAATGTGTTGTTGTTGTG 1304
|||||| |||||||||| ||||||||| |||| | || ||||| ||||||||||| ||||
Sbjct 1526 GAACATCACGGGAGGGTTCATTGACGA-TTTTCTATCTCATCTGATGTGTTGTTGCTGTG 1584
Query 1305 CCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCATCGAGCTTCTTACGGTACAGAGAAGA 1364
| ||||||||||||||||||||||| ||||||| | | |||| | ||||| |||||||
Sbjct 1585 CTCTTGTCCAAGAACTGAGAGAAGTAGAGATTCGTGGGGCTTAT---GGTACGGAGAAGA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5