BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17785.1 Length=579 Score E Sequences producing significant alignments: (Bits) Value Ahg946167 jgi|Araly1|946167|scaffold_702396.1 717 0.0 Ahg354748 jgi|Araly1|354748|fgenesh1_pg.C_scaffold_7001921 525 1e-148 > Ahg946167 jgi|Araly1|946167|scaffold_702396.1 Length=605 Score = 717 bits (388), Expect = 0.0 Identities = 520/581 (90%), Gaps = 19/581 (3%) Strand=Plus/Plus Query 1 ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGACTTAGATGGAAACTACCAA 60 ||||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||| Sbjct 21 ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGAGTTTGATGGATACT-GCAA 79 Query 61 AA-GCATACTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGCGACGTAGTGTG 119 || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 80 AAGGCATAGTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGTGACGTAGTGTG 139 Query 120 CCCCGAGGGCATAGATCCCAACCATATTCAACCTCATGTTCAAGT-GTGCACCATGCTTG 178 || ||||||||||||| | | ||||||||||||||||||||||| || |||| || ||| Sbjct 140 CCTCGAGGGCATAGATTCGTATCATATTCAACCTCATGTTCAAGTGGT-CACCTTGTTTG 198 Query 179 ATCTTAACGCCTTTGAACTGAACCAAATCTCTGATCTCTTTGATTGTTCCCAAATTCAAA 238 ||||||||||| ||| ||| |||||||||||||| |||||||||||| ||||||||||| Sbjct 199 ATCTTAACGCCATTGCGCTGGACCAAATCTCTGATTTCTTTGATTGTTTCCAAATTCAAA 258 Query 239 ATCATGGTTACGTTGGAGGGAAGCAGTTTATAATGTTGAGGCCATGGAGAGACTGTGTAA 298 || | | |||||||||| ||| |||| |||||||||||||||||||||||||| Sbjct 259 AT-A-----A---TGGAGGGAAGGAGTATATAGCGTTGAGGCCATGGAGAGACTGTGTAA 309 Query 299 GAAATACAGAAGGTTGCACTAAACATGTCCAAGGGATTAATTCCAAGTTCTGCACTTTCA 358 ||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| Sbjct 310 GAACTACAGAAGGTTGCACTAAGCATGTCCGTGGGATTAATTCCAAGTTCTGCTCTTTCA 369 Query 359 CCTGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCCAGCATTACTAGACTTT 418 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 370 CATGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCTAGCATTACTAGACTTT 429 Query 419 GGTCGTCGGAGGATGATTCGAGAGAACTGTCAGAACACGTTGGTGATTTAGCAATCCATC 478 ||||| | ||||||||||||||||| | |||||||| |||||||||||| ||||||||| Sbjct 430 GGTCG--G-AGGATGATTCGAGAGAAATATCAGAACATGTTGGTGATTTATCAATCCATC 486 Query 479 CTTGTGGTGATCCAGAGAGAATCTTTCCATTAAAGAAGAGGTCTCGAAGAAGAAGAGAGT 538 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | Sbjct 487 CTTGTGGTGATCCAGAGAGAATCTTTCCACTCAAGAAGAGGTCTCGAAGAAGAAGAGACT 546 Query 539 TTTTTGACAGCTACTACGAAGACATCTATGCATCATACTAG 579 ||| ||||||| || |||||||| |||| ||| |||||| Sbjct 547 TTTATGACAGCGAC---GAAGACATTTATGGATCTTACTAG 584 > Ahg354748 jgi|Araly1|354748|fgenesh1_pg.C_scaffold_7001921 Length=759 Score = 525 bits (284), Expect = 1e-148 Identities = 471/558 (84%), Gaps = 26/558 (5%) Strand=Plus/Plus Query 1 ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGACTTAGATGGAAACTACCAA 60 |||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||| | || Sbjct 1 ATGAGTAAGCCGAGATGGTTTCAAGTATTAACAGAGGAAAACTTAGATGGATACTGCAAA 60 Query 61 AAGCATACTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGCGACGTAGTGTGC 120 ||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct 61 AAGCATAGTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCATGTGACGTGGTGTGC 120 Query 121 CCCGAGGGCATAGATCCCA-ACCATATTCAACCTCATGTTCAAGTG-TGCACCATGCTTG 178 | || ||||||||||| | |||||||||||||||||||||||||| | | || || ||| Sbjct 121 CTTGAAGGCATAGATCC-ATACCATATTCAACCTCATGTTCAAGTGGTCC-CCTTGTTTG 178 Query 179 ATCTTAACG-CCTTTGA-ACTGAACCAAATCTCTGATCTCTTTGATTGTTCCCAAATTCA 236 || |||||| |||| || | || || ||||||||||| |||||||||||| ||||||||| Sbjct 179 ATGTTAACGGCCTT-GACA-TGGACGAAATCTCTGATATCTTTGATTGTTTCCAAATTCA 236 Query 237 AAATCATGGT-TACGTTGGAGGGAAGCAGTTTATAATGTTGAGGCCATGGAGA-GACTGT 294 |||| | ||| | | ||||||||||| | | ||| ||||||||||||| || || ||| Sbjct 237 AAATAAAGGTCT-CATTGGAGGGAAGGGGCTGATAGCGTTGAGGCCATGGCGAAGA-TGT 294 Query 295 GTAAGAAATACAGAAGGTTGCACTAAACATGTCCAAGGGATTAATTCCAAGTTCTGCACT 354 |||||| || ||||||||||||||| ||||||| |||| | ||||||||||| | Sbjct 295 ATAAGAACTAAAGAAGGTTGCACTAAGCATGTCCGTGGGACG--T-CCAAGTTCTGCTCG 351 Query 355 TTCACCTGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCCAGCATTA-CTAG 413 ||||| |||||| | ||||||||||||||| |||||||||||||||| ||||| | | || Sbjct 352 TTCACATGCAAGGTGGAACATGTTTTGGAGAATGAAGGTGATTTGTCTAGCATCATC-AG 410 Query 414 ACTTTGGTCGTCGGAGGATGATTCGAGAGAA-CTGTCAGAACACGTTGGTGATTTAGCAA 472 | |||||| | |||||||||| |||||| | ||| ||||| ||| |||| || || Sbjct 411 AAATTGGTCA--G-AGGATGATTCAAGAGAAAC-GTCCGAACATATTGATGATCTATCAC 466 Query 473 TCCATCCTTGTGGTGATCCAGAGAGAA-TCTTTCCATT-AAAGAAGAGGTCTCGAAGAAG 530 |||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||| | Sbjct 467 TCCATCCTTGTGGTGATCCAGAGA-AAGTCTTTCCATTCAAA-AAGAGGTCTCGAAGACG 524 Query 531 AAGAGAGTTTTTTGACAG 548 || |||||||| |||||| Sbjct 525 AATAGAGTTTTATGACAG 542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21176351895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5