BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17785.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946167 jgi|Araly1|946167|scaffold_702396.1 717 0.0
Ahg354748 jgi|Araly1|354748|fgenesh1_pg.C_scaffold_7001921 525 1e-148
> Ahg946167 jgi|Araly1|946167|scaffold_702396.1
Length=605
Score = 717 bits (388), Expect = 0.0
Identities = 520/581 (90%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 1 ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGACTTAGATGGAAACTACCAA 60
||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||
Sbjct 21 ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGAGTTTGATGGATACT-GCAA 79
Query 61 AA-GCATACTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGCGACGTAGTGTG 119
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 80 AAGGCATAGTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGTGACGTAGTGTG 139
Query 120 CCCCGAGGGCATAGATCCCAACCATATTCAACCTCATGTTCAAGT-GTGCACCATGCTTG 178
|| ||||||||||||| | | ||||||||||||||||||||||| || |||| || |||
Sbjct 140 CCTCGAGGGCATAGATTCGTATCATATTCAACCTCATGTTCAAGTGGT-CACCTTGTTTG 198
Query 179 ATCTTAACGCCTTTGAACTGAACCAAATCTCTGATCTCTTTGATTGTTCCCAAATTCAAA 238
||||||||||| ||| ||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 199 ATCTTAACGCCATTGCGCTGGACCAAATCTCTGATTTCTTTGATTGTTTCCAAATTCAAA 258
Query 239 ATCATGGTTACGTTGGAGGGAAGCAGTTTATAATGTTGAGGCCATGGAGAGACTGTGTAA 298
|| | | |||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 259 AT-A-----A---TGGAGGGAAGGAGTATATAGCGTTGAGGCCATGGAGAGACTGTGTAA 309
Query 299 GAAATACAGAAGGTTGCACTAAACATGTCCAAGGGATTAATTCCAAGTTCTGCACTTTCA 358
||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 310 GAACTACAGAAGGTTGCACTAAGCATGTCCGTGGGATTAATTCCAAGTTCTGCTCTTTCA 369
Query 359 CCTGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCCAGCATTACTAGACTTT 418
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 370 CATGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCTAGCATTACTAGACTTT 429
Query 419 GGTCGTCGGAGGATGATTCGAGAGAACTGTCAGAACACGTTGGTGATTTAGCAATCCATC 478
||||| | ||||||||||||||||| | |||||||| |||||||||||| |||||||||
Sbjct 430 GGTCG--G-AGGATGATTCGAGAGAAATATCAGAACATGTTGGTGATTTATCAATCCATC 486
Query 479 CTTGTGGTGATCCAGAGAGAATCTTTCCATTAAAGAAGAGGTCTCGAAGAAGAAGAGAGT 538
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 487 CTTGTGGTGATCCAGAGAGAATCTTTCCACTCAAGAAGAGGTCTCGAAGAAGAAGAGACT 546
Query 539 TTTTTGACAGCTACTACGAAGACATCTATGCATCATACTAG 579
||| ||||||| || |||||||| |||| ||| ||||||
Sbjct 547 TTTATGACAGCGAC---GAAGACATTTATGGATCTTACTAG 584
> Ahg354748 jgi|Araly1|354748|fgenesh1_pg.C_scaffold_7001921
Length=759
Score = 525 bits (284), Expect = 1e-148
Identities = 471/558 (84%), Gaps = 26/558 (5%)
Strand=Plus/Plus
Query 1 ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGACTTAGATGGAAACTACCAA 60
|||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||| | ||
Sbjct 1 ATGAGTAAGCCGAGATGGTTTCAAGTATTAACAGAGGAAAACTTAGATGGATACTGCAAA 60
Query 61 AAGCATACTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGCGACGTAGTGTGC 120
||||||| |||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 61 AAGCATAGTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCATGTGACGTGGTGTGC 120
Query 121 CCCGAGGGCATAGATCCCA-ACCATATTCAACCTCATGTTCAAGTG-TGCACCATGCTTG 178
| || ||||||||||| | |||||||||||||||||||||||||| | | || || |||
Sbjct 121 CTTGAAGGCATAGATCC-ATACCATATTCAACCTCATGTTCAAGTGGTCC-CCTTGTTTG 178
Query 179 ATCTTAACG-CCTTTGA-ACTGAACCAAATCTCTGATCTCTTTGATTGTTCCCAAATTCA 236
|| |||||| |||| || | || || ||||||||||| |||||||||||| |||||||||
Sbjct 179 ATGTTAACGGCCTT-GACA-TGGACGAAATCTCTGATATCTTTGATTGTTTCCAAATTCA 236
Query 237 AAATCATGGT-TACGTTGGAGGGAAGCAGTTTATAATGTTGAGGCCATGGAGA-GACTGT 294
|||| | ||| | | ||||||||||| | | ||| ||||||||||||| || || |||
Sbjct 237 AAATAAAGGTCT-CATTGGAGGGAAGGGGCTGATAGCGTTGAGGCCATGGCGAAGA-TGT 294
Query 295 GTAAGAAATACAGAAGGTTGCACTAAACATGTCCAAGGGATTAATTCCAAGTTCTGCACT 354
|||||| || ||||||||||||||| ||||||| |||| | ||||||||||| |
Sbjct 295 ATAAGAACTAAAGAAGGTTGCACTAAGCATGTCCGTGGGACG--T-CCAAGTTCTGCTCG 351
Query 355 TTCACCTGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCCAGCATTA-CTAG 413
||||| |||||| | ||||||||||||||| |||||||||||||||| ||||| | | ||
Sbjct 352 TTCACATGCAAGGTGGAACATGTTTTGGAGAATGAAGGTGATTTGTCTAGCATCATC-AG 410
Query 414 ACTTTGGTCGTCGGAGGATGATTCGAGAGAA-CTGTCAGAACACGTTGGTGATTTAGCAA 472
| |||||| | |||||||||| |||||| | ||| ||||| ||| |||| || ||
Sbjct 411 AAATTGGTCA--G-AGGATGATTCAAGAGAAAC-GTCCGAACATATTGATGATCTATCAC 466
Query 473 TCCATCCTTGTGGTGATCCAGAGAGAA-TCTTTCCATT-AAAGAAGAGGTCTCGAAGAAG 530
|||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||| |
Sbjct 467 TCCATCCTTGTGGTGATCCAGAGA-AAGTCTTTCCATTCAAA-AAGAGGTCTCGAAGACG 524
Query 531 AAGAGAGTTTTTTGACAG 548
|| |||||||| ||||||
Sbjct 525 AATAGAGTTTTATGACAG 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5