BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17787.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480676 jgi|Araly1|480676|fgenesh2_kg.3__3377__AT2G17787.1 1496 0.0
> Ahg480676 jgi|Araly1|480676|fgenesh2_kg.3__3377__AT2G17787.1
Length=1368
Score = 1496 bits (810), Expect = 0.0
Identities = 1150/1304 (88%), Gaps = 64/1304 (5%)
Strand=Plus/Plus
Query 30 tttttCTATAAATAACGAAGCAACGA-GTTAACGAGAAAAATTCTGGATCGGAGAGAGCT 88
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 TTTTTCTATAAATAACGAAGCAACGAGGTAAACGAGAAAAATTCTGGATCGGAGAGAGCT 60
Query 89 ACGAAGCCTGGGAATTTTCGTTA---CCT-CCTTCGTTCTTCTCTGATCTCGAATTCAAT 144
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 61 TCGAAGCCTGGGAATTTTCGTTACCCCCTCCCTTCGTTCTTCTCTGATCTCGAATTCGAT 120
Query 145 ACCAAATTCTT-CAATCTCCCGAATCTGATTTTCTTAT--C-ACTATCCCTGGATAACAA 200
||||||||||| | ||||||||| | ||||||| | || | ||||| | |||||||||
Sbjct 121 ACCAAATTCTTGC-ATCTCCCGATTTTGATTTTATCATCACTACTATGTCGGGATAACAA 179
Query 201 AAGCCCCCAAAGTAAAAACCCAATTGCGATTCCCTCGTAAACCAATCTAGGGTTTTCGCG 260
||||||||||||| ||||||||||| | || |||||||||||||| |||||||
Sbjct 180 AAGCCCCCAAAGT-AAAACCCAATT--G-------CG-AAACCAATCTAGGG-TTTCGCG 227
Query 261 AGTTCGTCTCTGAGCTTGTTTGTTTGTGATCGTGTGAGAATGTCTCGGTGTTATCCGTTT 320
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 228 AGTTCGTCTCTGA----GTTTGTTTGTGATCGTGTGAGTATGTCTCGGTGTTATCCGTTT 283
Query 321 CCACCACCTGGTTATGTTTGGAAAGAAAGTCTGATCGAATCGATCAAGGGGGCAAAGGAG 380
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 284 CCACCACCTGGTTATGTTCGGAAAGAAACTCTGATCGAATCGATCAAGGGGGCAAAGGAG 343
Query 381 GAAGTGAAGAAAGATAGAAAACACAAGAGGAATGAAAAAGATAGAAAGGATAGGGATAAT 440
||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 344 GAAGTTAAGAAAGATAGAAAACACAAGAGGAAGGAAAAAGAGAGAAAGGAGAGGGAAAAT 403
Query 441 GAGGCGGGGAGGAGCAGGAAGCATCGGCATAAGAGACGGCGGAAAGATGAAGGCGCC-AT 499
|||||||| | ||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 404 GAGGCGGGTCGAAGCAGGAAGCATCGGCATAAGAGACGGCGCAAAGATGAAGGCACCAAT 463
Query 500 --T-G-C-TAGTGGCAAATTAGTAAGCAGTGAGGTCGAGTTGTTAGAGAAGAGCTGCCAG 554
| | | ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||
Sbjct 464 GCTAGTCGTAGTGGCAAATTAATAAACAGCGAGGTCGAGTTTTTAGAGAAGAGCTGCCAG 523
Query 555 ACTGTGGAACTTGAGCTTCAAACATCGTCTCAGAATTCTTGTGATAGCACTCTTCATAGC 614
|| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 524 ACAGTGGAGCTTGAGCTTCAAACATCGTCTCAGACTTCTTGTGATAGCACTCTTCATAGC 583
Query 615 AATGAGAGACCAAAGCAAATTCAGAGTCAGCCCCTTGATGAAACCAGCATACGGACTCGG 674
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 584 AATGAGAGACCAAAGCAAATTCAGAGTCAGCCCCTTGATGAAACCGGCATACGGA-TCCG 642
Query 675 -TTACCTGACAAAGGGCAGGAAGATCCTGAGGATGGGGTGATGATGACCAGCAAGGATCA 733
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 643 CTTACCTGACAAAGGGCAGGAAGATCCTGAGGATGAGGTGATGATGACCAGCAAGGATCA 702
Query 734 AAAACAGCGCTTTTCCCGGGAAATGTTAGATGCTTCTCAAGCTGCTACTGCTCCTAATGA 793
|| | | ||||||||| |||||||||||||| |||||| | | ||||| ||
Sbjct 703 AAGA------T---CCCGGGAAAAGTTAGATGCTTCTCTGGCTGCTGC--C-CCTAAAGA 750
Query 794 GTCTGTTGGTCAT-TCAAGG-GTCTGTCAAGAGAAAAGAATAGA-TC---CAACTTTTGG 847
||||||||||||| | | | || || |||| ||| || ||| |
Sbjct 751 GTCTGTTGGTCATCTTTATTCGACTC-CACGAGATGCTTTTAGGGTCTGTCAAGAGAAAG 809
Query 848 TTCG---TCGAG--AGAGATCACA-A-CAAAACTCAACAAAGAGAAGAAGTCAGTTCCTT 900
| | || || ||||| | | | |||||||| |||||||||||| || ||| |
Sbjct 810 TAAGAGATCCAGCCAGAGAAAAAATAACAAAACTCGGCAAAGAGAAGAAACCAATTCATC 869
Query 901 CGAAAGATAACAGAAAAGTTAGTAAAGAGAAGAAGATGCCATCATTATCTTCATGTAAC- 959
||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||| |
Sbjct 870 CGAAAGATAACAGAAAAATCAGTAAAGAGAAGAAGATTCCATCATCATCTTCATGTA-CT 928
Query 960 CCTCTGGAACAAGAGAAACCGA-CCTCTAGTCATCAAGAAACCCCTGGACCTTCCAAGCT 1018
|||||||||||||||||||| | |||||||||||||||||||| |||| |||| |||||
Sbjct 929 CCTCTGGAACAAGAGAAACC-ATCCTCTAGTCATCAAGAAACCATTGGATCTTCAAAGCT 987
Query 1019 ATTATGCAGGAAATGCCCTCCTTCCATGGCTGGGCAACTCTTGAATCTTATCGAGAACTG 1078
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 988 ATTATGCAGGAAATGCCCTCCTTCCATGGCCGGGCAACTCTTGAATCTTATCGAGAACTG 1047
Query 1079 GGCTCCTGATCGGGTTGAGAGCAAGCTCACTGACTCTGAAGATCAAGAATGGTGGTTGTT 1138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1048 GGCTCCTGATCGGGTTGAGAGCAAGCTCACAGACTCTGAAGATCAAGAATGGTGGTTGTT 1107
Query 1139 CATCAAGTTTGGAGCCAAAAGTCCACAAGTTAGCAATCAGAAAACCAACCAGGGAAGTAG 1198
||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1108 CATCAAGTTTGGAGCCAAAAGGCAACAAGTTAGCAATCAGAGAACCAACCAGGGAAGTAG 1167
Query 1199 TTCCATGGTGTGGCCGACTGCTAGATTTCTTCCTGAAGCCGAAGTACACGCATTGCCATT 1258
|| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1168 TTTGATGGTGTGGCCAACTGCTAGATTTCTTCCGGAAGCTGAAGTACACGCATTGCCATT 1227
Query 1259 CACTGTCCCGTTCTGATTTCAACAAAGTTGGTCgagagagagtg 1302
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CACTGTCCCGTTCTGATTTCAACAAAGTTGGTCGAGAGAGAGTG 1271
Score = 108 bits (58), Expect = 1e-22
Identities = 104/123 (85%), Gaps = 15/123 (12%)
Strand=Plus/Plus
Query 1312 gagagagagTGGTTAACATGACCAACATATAGTTTTCCCAAGTATTTTAGAGTAGCCTTG 1371
|||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 1261 GAGAGAGAGTGGTTAACATGACCAACATATAGTTTTCCTATGTATTTTAGA--A------ 1312
Query 1372 AAACTTAAGAAACTCAGAATTATGTGTGATTCTTTGTAGATGTACTGGTAATATAGTAAA 1431
|| || | ||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AA-CTCA-GAA--T-ATAA--ATGTGTGATTCTTTGTAGATGTACTGGTAATATAGTAAA 1365
Query 1432 TCA 1434
|||
Sbjct 1366 TCA 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5