BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17830.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480681 jgi|Araly1|480681|fgenesh2_kg.3__3382__AT2G17830.1 1465 0.0
Ahg929603 jgi|Araly1|929603|scaffold_302060.1 54.7 2e-06
> Ahg480681 jgi|Araly1|480681|fgenesh2_kg.3__3382__AT2G17830.1
Length=1298
Score = 1465 bits (793), Expect = 0.0
Identities = 1168/1340 (87%), Gaps = 61/1340 (5%)
Strand=Plus/Plus
Query 45 TTCAACAATGGCGATAATGTCAGATCTTCCACGGGATTTGTTAGCAGAGATTCTCAGTAG 104
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTCAACAATGACGATAATGTCAGATCTTCCACGGGATTTGTTAGCGGAGATTCTCAGTAA 60
Query 105 GGTTCCATTGGCATCTTTAAGATCAGTGCGGTTCACTTGCAAAAAATGGAACGATTTATC 164
|||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTCCGTTGACATCTCTAAGAGCAGTGCGGTTCACTTGCAAAAAATGGAACGATTTATC 120
Query 165 CAAAGATCGGAGCTTTCTCAAGAAACAAATCGTCGAAGCAAAGAAGAAGCAATTGAAATC 224
||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct 121 CAAAGATCGGAGCTTTCACAAGAAGCAAATCATCGAAGCAAAGAAGAAGCAATTGAAA-- 178
Query 225 GAAGGAGTTTGAGGTGATCATGATGAGGAATTTTAGAGTTTATCTAACGAGCGTCGATCT 284
|| | ||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
Sbjct 179 GA-G---TTTGAGGTGATCATGATGAGGAATTTTAGGGTTTATCTGACGAGTGTCGATAT 234
Query 285 CCACAACGATGTTAATCCATCTTTTACGCCTAAAGGTACACTTACTAGCTTTAGCGATGA 344
||||| ||||||| |||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 235 CCACAGCGATGTTGATCCATCTTTTACGCCTAAAGGTACACTTATTAGCTTAAACGATGA 294
Query 345 TGCAAATCAGCATCAAGTCGATAATGTGTCTA-GTGTCTTTCACTGCGATGGTTTACTCT 403
||||||||| ||||||||||||||||| |||| | ||||||||||||||||| |||||||
Sbjct 295 TGCAAATCATCATCAAGTCGATAATGTATCTAAG-GTCTTTCACTGCGATGGCTTACTCT 353
Query 404 TATGCATCACCAAAGACCTCAACTTTAGGCTTGTGGTTTGGAACCCTTATTTTGGGCAAA 463
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 354 TATGCATCACCAAAGACCTTAACTTTAGGCTTGTGGTTTGGAATCCTTATTTTGGGCAAA 413
Query 464 CAAGATGGATCCAACCCAGAAATTCTTACCACATAAAGGACATTTACGCTATTGGGTACG 523
|||||||||| |||||||||||||||| ||||| ||| | ||||||| |||||||||
Sbjct 414 TAAGATGGATCAAACCCAGAAATTCTTATCACATTTTGGATAGTTACGCTTTTGGGTACG 473
Query 524 ATGAGAATAAGAACCACAAAATCCTGAGATTGAAGGATCAGTATTACGATTATGATTCAC 583
| ||||||||||||||||||||| ||||||| |||||| | |||||| | | | || |
Sbjct 474 ACGAGAATAAGAACCACAAAATCTTGAGATTTAAGGATAATTATTAC-ACT-T--TT-AG 528
Query 584 ATCCACGGGCA-CGGATTTGTGAGTTTGAACTCTACAGTTTTGAGTCTAATTCATGGAAG 642
| |||||| | | |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 529 -TGCACGGG-ATCAGATTTGTGAGTTTGAAGTCTATAGTTTTGAGTCTAATTCATGGAAG 586
Query 643 GTTGTTCTTGATGTTAGTCCTGACTGGTATATACACTCTTATCACCGTGGCTTGTCTGTA 702
|||||||||||||| ||||||| |||| ||||| | ||||| ||||||| |||||| |
Sbjct 587 GTTGTTCTTGATGTGAGTCCTGCCTGGGATATAGAGGCTTATAACCGTGGATTGTCTCTT 646
Query 703 AAGGGGAATACTTACTGGTATGC-AACAGAGAAGCATGGCT-ATGT--------TA---A 749
||||||||||||||||||||||| || ||||||||||| | | | || |
Sbjct 647 AAGGGGAATACTTACTGGTATGCTAA-AGAGAAGCATGACAGAGGAGGAGAGGATATTGA 705
Query 750 TTTCTTGATCTGTTTTGATTTCACAACTGAGAAATTTGGACCGCGTTTGCCTCTGCCTTT 809
||||||||| ||||||||||| ||| | |||| ||||||||||||| |||||||||||||
Sbjct 706 TTTCTTGATATGTTTTGATTTTACATCAGAGAGATTTGGACCGCGTCTGCCTCTGCCTTT 765
Query 810 TAACGCTACCGAGTCTTTTACTTATGATGATGTTGTTACTCTCTCTAGTGTTGGAGAAGA 869
|||| || | || | |||| || ||| ||||||||||||||||||||||||||||
Sbjct 766 TAACTCTTC----TCCT--ACTTGGGAAGATATTGTTACTCTCTCTAGTGTTGGAGAAGA 819
Query 870 GCAGCTTGCGCTGTTGTTTCAGAGTGAT-GCTACATTGATG-ATGGAGATTTGGGTTACG 927
||||||||| ||||||||||||| || | |||| | || |||||||||||| |||||
Sbjct 820 TCAGCTTGCGGTGTTGTTTCAGAGCAATCG-TACAAAG-TGGATGGAGATTTGGATTACG 877
Query 928 AGCAAGGTTGACCCCACAGAGGTTTTGTGGAACAAATTGTTCTTAGCGGTTGATCATGAT 987
|||||| |||| || |||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 878 AGCAAGATTGAGCCTACAGAGGTTTCATGGAACAAGTTGTTCTTAGCGGTTGAT-ATGA- 935
Query 988 ATGATAGAATTCGACTATGAGTTAAAGTTTGTGGCAGACGCTGGGAGTTTCTTCATTGAC 1047
|| | | || ||| | || | ||| |||| | |||||||||||||||||||||
Sbjct 936 --GA--GCACTC-ACTC-GTTTTGA-GTTCCTGGCCCATGCTGGGAGTTTCTTCATTGAC 988
Query 1048 CAGAAGAAGAATGTTGTTGTGGTTTTTGATAAAGATATGAATGAGCATACCCATCGTGGC 1107
||||||||||||||||||||||||||||||| ||||||| ||| | |||| ||||||||
Sbjct 989 CAGAAGAAGAATGTTGTTGTGGTTTTTGATAGAGATATGGATGCCCCTACCGATCGTGGC 1048
Query 1108 ATGGCTTACATTGTTGGGAAGAACGGATACTTCA-AAAGAGTGGATATTGGGGAAGAAGC 1166
|||||||||||| |||||||||| |||||||||| ||| ||||||| |||||||||| ||
Sbjct 1049 ATGGCTTACATTATTGGGAAGAATGGATACTTCAGAAA-AGTGGATCTTGGGGAAGATGC 1107
Query 1167 ATACACGAGTTGTTTCCCACTTGTCTGTTCTTATGTTCCAAGCTCAGTGCAAATCAGGCA 1226
| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AGACTCGAGTTGTTACCCACTTGTCTGTTCTTATGTTCCAAGCTCAGTGCAAATCAGGCA 1167
Query 1227 GCTAACCTGATTACTTTCTTTTTCTGGCATCTTCGATTGTATAAATCTGACCACTGTTAT 1286
|||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1168 GCTAACCTGATT--TT-CTTTTTCTGGCATCTTCGATTGTATAAATCTGACCATTTTTAT 1224
Query 1287 CAGTTATCTGGAATCTCAGAGACATGGCCTCTCTACTACTATATGTAAACTCTCGT-GTG 1345
|| ||||||||||||||||||||||||||||| ||||| || ||||||||| || |||
Sbjct 1225 CACTTATCTGGAATCTCAGAGACATGGCCTCT--ACTAC-AT--GTAAACTCT-GTTGTG 1278
Query 1346 GCTCTTCCAGACATTTCTTT 1365
||||||||||||||||||||
Sbjct 1279 GCTCTTCCAGACATTTCTTT 1298
> Ahg929603 jgi|Araly1|929603|scaffold_302060.1
Length=932
Score = 54.7 bits (29), Expect = 2e-06
Identities = 37/40 (93%), Gaps = 3/40 (8%)
Strand=Plus/Plus
Query 49 ACAATGGCGATAATGTCAGATCTTCCACGGGATTTGTTAG 88
||||||||| ||||||||||||||||||||||||||||
Sbjct 19 ACAATGGCG---ATGTCAGATCTTCCACGGGATTTGTTAG 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5