BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17840.1
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480683 jgi|Araly1|480683|fgenesh2_kg.3__3384__AT2G17840.1 2459 0.0
> Ahg480683 jgi|Araly1|480683|fgenesh2_kg.3__3384__AT2G17840.1
Length=1641
Score = 2459 bits (1331), Expect = 0.0
Identities = 1514/1602 (95%), Gaps = 13/1602 (1%)
Strand=Plus/Plus
Query 32 CCGATTTGAAATCGCCGGCGAAAATGGAATCCTCCGGCGACAAGCAAACTTCTTCTCTTT 91
||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||| ||||| |
Sbjct 1 CCGATTTGAAATCTCCGACGACAATGGAACCCTCCGGCGACAAGCAAGCTTCATCTCTCT 60
Query 92 ACCCTACTGTTGACACATCCAATCCCGAAGCTCCTATAAACCCTAGCTCATCATCTTCTA 151
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 61 ACCCTACTGTTGACACATCGAATCCCGAAGCTCCTATAAACCCTACCTCTTCATCATCTA 120
Query 152 CTAACAATCTCTATCCTTCTCTCGATATGAATGATCTCGCTCGTAATCTCTTCCCTGAAC 211
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CTAATAATCTCTATCCTTCTCTCGATATGAATGATCTCGCTCGTAATCTCTTCCCTGAGC 180
Query 212 AACCAGAGACGAGTT-CTATTCCGGTTTCAGCTCCTCCCGCTGCGACGGAGGAAGTAATT 270
|||| |||||||||| | | ||| |||| |||||||| || ||||||||||||||||||
Sbjct 181 AACCGGAGACGAGTTCCGA-TCCCGTTTTGGCTCCTCCTGCAGCGACGGAGGAAGTAATT 239
Query 271 TTGAAAATCTCCGGCGCGATTCTTCATTTAATCGACAAATCTTACAGCGTCGAGCTCGCT 330
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 240 TTGAAAATCTCCGGCGCGATTCTTCACTTAATCGACACATCTTACAGCGTCGAGCTCGCT 299
Query 331 TGCGGTGATCTTGAGATCATCCGTATTGTTCAAGGAGAGAATGTTGTCGCTGTTCTCGCT 390
||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 300 TGCGGCGATCTTTCGATCATCCGTATTGTTCAAGGAGATAATGTTGTCGCTGTTCTTGCT 359
Query 391 AGTGTCT-CCGATGAGATTCAATGGCCGTTGACTAAGGATGAGAACTCTGTCAAGGTCGA 449
|||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 CGTGT-TGGAGATGAGATTCAATGGCCGTTGACTAAGGATGAGAACTCCGTCAAGGTCGA 418
Query 450 TGAGTCTCATTACTTCTTCACGCTTCGTCCTACCAAAGAGATCTCACATGATTCAAGCGA 509
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 419 TGAGTCTCATTACTTCTTCACGCTTCGTCCTACCAAAGAAATCACACATGATTCAAGCGA 478
Query 510 CGAAGAAGACGGAGATGGAGGGAAAAACACTAACGAGATGTTGAACTACGGACTTACAAT 569
|| || || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CG-AG--GA---AGATGGAGCGAAAAACACTAACGAGATGTTGAACTACGGACTTACAAT 532
Query 570 TGCTTCTAAAGGTCAAGAGCATTTACTGGTGGAGCTTGAGAAGATCTTGGAGGATTATAG 629
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 533 TGCTTCCAAAGGTCAAGAGCATTTGCTGGTGGAGCTTGAGAAGATCTTGGAGGATTACAG 592
Query 630 TAGTTTCTCTGTGCAGGAGGTGTCAGAGGAAGCGAAGGAAGCAGGTGAAAAGGTTTTGGA 689
| ||||| | |||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 593 TTGTTTCACGGTGCAGGAAGTGTCGGAGGAAGCGAAGGAAGCAGGGGAAAAGGTTTTGGA 652
Query 690 TGTGACGGTGGCGAGAGAGACGTCTCCGGTGGAGCTTACTGGGGAAAGGAAAGAGATTGT 749
||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||
Sbjct 653 TGTGACGGTGGCGAGAGAGACATCGCCGGTGGAGCTTACTGGAGAGAGGAAAGAGATTGT 712
Query 750 GGAGAGGCAATGTTCTGCTTATTGGACTACTTTGGCTCCGAATGTGGAGGATTATAGCGG 809
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 713 GGAGAGGCAATGTTCGGCTTATTGGACGACTTTAGCTCCGAATGTGGAGGATTATAGCGG 772
Query 810 GAAGGCGGCGAAGCTGATTGCAACTGGCTCAGGACATTTGATAAAAGGGATTCTTTGGTG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GAAGGCGGCGAAGCTGATTGCAACTGGCTCAGGACATTTGATAAAAGGGATTCTTTGGTG 832
Query 870 TGGAGATGTGACTATGGATAGGCTTATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTC 929
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 833 TGGAGATGTGACTATGGATAGGCTAATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTC 892
Query 930 AAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGAATCAGAAGAGTGAA 989
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 893 AAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGGATCAGGAGAGTGAA 952
Query 990 GAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGT 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGT 1012
Query 1050 TTCTGGATTCTTCACAAGTTCAGTGGCAAACACCAAAGTAGGAAAGAAATTCTTCAGCCT 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1013 TTCTGGATTCTTCACAAGTTCAGTGGCAAACACCAAAGTAGGAAAGAAATTCTTTAGTCT 1072
Query 1110 TCTTCCTGGAGAAGTCATCCTTGCATCTCTTGACGGATTCAATAAGGTCTGTGACGCTGT 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1073 TCTTCCTGGAGAAGTCATCCTTGCATCTCTTGACGGATTCAATAAGGTCTGTGATGCTGT 1132
Query 1170 TGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGA 1229
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1133 TGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTCACAACTGAACTTGTTGA 1192
Query 1230 TCACAAGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGATGCAGCAGGATA 1289
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1193 TCACAAGTATGGTGGTAAAGCGGCTGAGGCAACAAACGAAGGGCTCGATGCAGCAGGATA 1252
Query 1290 TGCGCTTGGCACAGCCTGGGTTGCTTTCAAAATAAGAAAGGCTATTAACCCGAAGAGTGT 1349
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1253 TGCGATTGGCACAGCCTGGGTTGCTTTCAAAATCAGAAAGGCTATTAACCCGAAGAGTGT 1312
Query 1350 ACTCAAGCCTTCGACGCTTGCAAAAACCGCCATTAGATCTGCAGCTTCACaaaaaaaaGC 1409
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1313 ACTCAAGCCTTCGACGCTTGCAAAGACCGCCATTAGATCTGCAGCTTCACAAAAGAAAGC 1372
Query 1410 CTAGTAAGGCTG-CCTGATGAAGCAAAACAGACTCATTGGTCCTGTTTGTTTGTATCGTC 1468
||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1373 GTAGGAAGGCTTTCCTGATGAAGCAAAACAGACTCATTTGTCCTGTTTGTTTGTATCGTC 1432
Query 1469 TTGTTGTCTTTTGATAAATAAGTTAAACTAAAAAGAGGTGTGGATTAGTAGTTGTTGTGA 1528
|||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1433 TTGTTGTCTTTTGATACAGAAGTAAAACTGAAAAGAGGTGTGGATTAGTAGTTGTTGTGA 1492
Query 1529 AGTGTTTATGTTTCTCTATGAGAATCATGTAATGTCTCTGATTTGATTCGGAATATGTGC 1588
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1493 AGTGTTTATGTTTCTCTATGAGAATCATGTAATGTCTCTGAGTTGATACGGAATATGTGC 1552
Query 1589 TGTATGTGTAAGT-GGTCAAATCAAGATTCCTTGAAATTAGT 1629
||||||||||||| || ||||||||||||||||||||| |||
Sbjct 1553 TGTATGTGTAAGTTGGCCAAATCAAGATTCCTTGAAAT-AGT 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64943867725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5