BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17845.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1 891 0.0
Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261 745 0.0
Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1 628 2e-179
> Ahg485952 jgi|Araly1|485952|fgenesh2_kg.5__1944__AT3G55290.1
Length=898
Score = 891 bits (482), Expect = 0.0
Identities = 704/810 (87%), Gaps = 19/810 (2%)
Strand=Plus/Plus
Query 133 TGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAG 192
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 TGTGAGCTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAG 108
Query 193 GTATGTCTTGATCTAGCCAAAGCTGGCTGTAAGATTATCGCAGCAGCTCGTCGTGTCGAT 252
| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 109 ATCTGTCTTGATCTTGCCAAAGCTGGTTGTAAGATTATTGCAGCAGCTCGTCGTGTCGAT 168
Query 253 CGTCTCAAATCTCTCTGCTCTGAAATAAATC-GCTTCGAATATTCAGCTGGAATTCAAGC 311
|||||||| ||||||||||||||||| || | ||| | ||| | || | || | |||||
Sbjct 169 CGTCTCAACTCTCTCTGCTCTGAAATCAA-CAGCTCC-AAT-T-CAACCGGGGTCCAAGC 224
Query 312 TGAAGCTCTTGAGCTAGACGTTTCATCAGACGCAGCCACCGTTCAAAAAGCGGTTAAGA- 370
| ||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||
Sbjct 225 CGCAGCTCTTGAGCTAGACGTTTCATCAGATGCAGCCACCATTCAAAAAGCGAT-AAGGG 283
Query 371 AAGCTTGGGAAATCTTCGGAAAGATCGATGCGTTGATCAACAATGCGGGATTTAGAGGCA 430
|||||||||| ||||| ||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 284 AAGCTTGGGACATCTTTGGAAAGATCGATGCGTTGATCAACAATGCCGGAATCAGAGGCA 343
Query 431 ATGTCAAGTCGAGTTTGGATTTGTCAGAAGACGAGTGGGACAAAGTCTTCAAGACCAACT 490
||||||||||||||||||||||||| || || || |||||||| |||||||| || ||||
Sbjct 344 ATGTCAAGTCGAGTTTGGATTTGTCGGAGGATGAATGGGACAACGTCTTCAAAACTAACT 403
Query 491 TAACCGGAACCT-GGTTAGTCTCCAAATACGTATGCATTTTAATGCGCGATGCTAAACGT 549
|||| ||| ||| ||||||| || ||||| || || |||||||||| || |||||| |
Sbjct 404 TAACGGGA-CCTTGGTTAGTATCTAAATATGTTTGTGTTTTAATGCGTGACGCTAAAAGA 462
Query 550 GGTGGTGGCTCGGTGATAAACATTTCATCAGTAT-CCTGGCTCCACCGCGGTCAGGT-GC 607
||||| ||||||||||||||| |||||| | | || || ||| ||||| | | ||
Sbjct 463 GGTGG---CTCGGTGATAAACATCTCATCAAT-TGCCGGGGTCC---GCGGT-ATCTTGC 514
Query 608 CTGGTGGAGTCGCATACGCTTGTTCTAAAGGCGGTGTTGACACCATGACAAGGATGATGG 667
| |||||| | ||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 515 CCGGTGGACTTGCATATGCTTGTTCCAAAGGCGGTGTTGACACCATGTCAAGGATGATGG 574
Query 668 CACTTGAGTTAGGTGTTTACAAGATCAGAGTGAATTCGATCGCACCAGGGCTTTTAAAGT 727
|| |||||||||||||| |||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 575 CAATTGAGTTAGGTGTTCACAAGATCAGAGTGAACTCGATTGCGCCAGGGCTTTTCAAGT 634
Query 728 CAGAGATCACACAAGGTCTTATGCAAAAAGAGTGGCTCAAGACCGTTATCGAGAGGACAG 787
|||||||||||||||||||||||||||| || |||||||||| || | ||||||||| |
Sbjct 635 CAGAGATCACACAAGGTCTTATGCAAAAGGAATGGCTCAAGAATGTGACCGAGAGGACTG 694
Query 788 TCCCATTAAAGGTACAACAGACAGTGGATCCGGGGCTTACTTCTCTCCTACGCTACCTCG 847
| || |||||||| |||||||| || ||||| ||||||||||||||| | ||||| |||
Sbjct 695 TGCCGTTAAAGGTGCAACAGACCGTTGATCCAGGGCTTACTTCTCTCGTTCGCTATCTCA 754
Query 848 TTCACGACTCGTCTAAATATATCTCCGGGAATACATACATTGTCGATGCTGGAGCTTCAT 907
|||| ||||| ||| ||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 755 TTCATGACTCTTCTCAATATATATCCGGGAATACATACATTGTCGATTCTGGAGCTACAT 814
Query 908 TGGTCGGTCTGCCCATTTTTTCATCTCTCT 937
|| |||| |||||||||||||||||||||
Sbjct 815 TGCCCGGTGTGCCCATTTTTTCATCTCTCT 844
> Ahg907180 jgi|Araly1|907180|Al_scaffold_0002_261
Length=873
Score = 745 bits (403), Expect = 0.0
Identities = 681/814 (84%), Gaps = 24/814 (3%)
Strand=Plus/Plus
Query 133 TGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAG 192
||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 73 TGTGAGCTTAATGGTAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGGAGAGAG 132
Query 193 GTATGTCTTGATCTAGCCAAAGCTGGCTGTAAGATTATCGCAGCAGCTCGTCGTGTCGAT 252
| ||| ||||||| | ||||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct 133 ATCTGTATTGATCTTGGCAAAGCTGGTTGTAAGATTATTGCAGCGGCTCGTCGTGTTGAT 192
Query 253 CGTCTCAAATCTCTCTGCTCTGAAATAAATC-GCTTCGAATATTCAGCTGGAATTCAAGC 311
|||||| | |||||||| | |||||| || | |||| | | || | |||||||||||||
Sbjct 193 CGTCTCGATTCTCTCTGTTTTGAAATCAA-CAGCTTTGG-T-TTAA-CTGGAATTCAAGC 248
Query 312 TGAAGCTCTTGAGCTAGACGTTTCATCAGACGCAGCCACCGTTCAAAAAGCGGTTAA-GA 370
| |||||||||| |||| |||||||||||||||| ||| ||| ||||| |||||| ||
Sbjct 249 CGCAGCTCTTGAGTTAGATGTTTCATCAGACGCAGACACTATTCGAAAAGTGGTTAAAGA 308
Query 371 AAGCTTGGGAAATCTTCGGAAAGATCGATGCGTTGATCAACAATGCGGGATTTAGAGGCA 430
| |||||||||||||| |||||||| |||| ||||| |||||||| ||| | |||||||
Sbjct 309 A-GCTTGGGAAATCTTTGGAAAGATAGATGTTTTGATTAACAATGCTGGAATCAGAGGCA 367
Query 431 ATGTCAAGTCGAGTTTGGATTTGTCAGAAGACGAGTGGGACAAAGTCTTCAAGA-CCAAC 489
||||||||||||||||||||||||||||||| || ||||| |||||||| | || |||||
Sbjct 368 ATGTCAAGTCGAGTTTGGATTTGTCAGAAGAAGAATGGGATAAAGTCTTTA-GAACCAAC 426
Query 490 TTAACCGGAACCTGGTTAGTCTCCAAATACGTATGCATTTTAATGCGCGATGCTAAACGT 549
||||| ||| | |||||||| || |||| ||| | |||| ||||| || |||||||||
Sbjct 427 TTAACTGGATCTTGGTTAGTATCTAAATTCGTCGGTGTTTTGATGCGTGACGCTAAACGT 486
Query 550 GGTGGTGGCTCGGTGATAAACATTTCATCAGTATC-CTGG-CTCCACCGCGGTC-AGGTG 606
||||| ||||||||||||||| || || | ||| |||| || ||||| ||| | | |
Sbjct 487 GGTGG---CTCGGTGATAAACATCTCGTC-G-ATCTCTGGGCTTCACCGTGGTTTACG-G 540
Query 607 CCTGGTGGAGTCGCATACGCTTGTTCTAAAGGCGGTGTTGACACCATGACAAGGATGATG 666
|| ||| | | || || |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 541 CCAGGTTGTCTTGCGTATGCTTGTTCCAAAGGCGGTGTTGACACCATGACGAGGATGATG 600
Query 667 GC-ACTTGAGTTAGGTGTTTACAAGATCAGAGTGAATTCGATCGCACCAGGGCTTTTAAA 725
|| | |||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct 601 GCTA-TTGAGTTAGGTGTTTATAAGATCAGAGTGAACTCGATCGCACCGGGGCTTTTCAG 659
Query 726 GTCAGAGATCACACAAGGTCTTATGCAAAAAGAGTGGCTCAAGACCGTTATCGAGAG-GA 784
||||||||||||||||||||||||||| ||||| |||||||||| |||| || || ||
Sbjct 660 GTCAGAGATCACACAAGGTCTTATGCAGAAAGAATGGCTCAAGAAAGTTA-CG-GAACGA 717
Query 785 -CAGTCCCATTAAAGGTACAACAGACAGTGGATCCGGGGCTTACTTCTCTCCTACGCTAC 843
| || || |||||| | |||||||| |||||||| |||||||| |||||| | || ||
Sbjct 718 ACTGTACCGTTAAAGATGCAACAGACTGTGGATCCAGGGCTTACATCTCTCGTGCGTTAT 777
Query 844 CTCGTTCACGACTCGTCTAAATATATCTCCGGGAATACATACATTGTCGATGCTGGAGCT 903
||| |||| || || ||| ||||| || | |||||||| |||||||||||| ||||||||
Sbjct 778 CTCATTCATGATTCTTCTCAATATGTCACTGGGAATACTTACATTGTCGATTCTGGAGCT 837
Query 904 TCATTGGTCGGTCTGCCCATTTTTTCATCTCTCT 937
||||| |||| ||||||| ||||| |||||||
Sbjct 838 ACATTGCCCGGTGTGCCCATCTTTTCTTCTCTCT 871
> Ahg480684 jgi|Araly1|480684|fgenesh2_kg.3__3385__AT2G17845.1
Length=837
Score = 628 bits (340), Expect = 2e-179
Identities = 434/478 (91%), Gaps = 11/478 (2%)
Strand=Plus/Plus
Query 466 TGGGACAAAGTCTTCAAGACCAACTTAACCGGAACCTGGTTAGTCTCCAAATACGTATGC 525
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 367 TGGGACAAAGTCATCAAGACCAACTTAACGGGAACTTGGTTAGTCTCCAAATATGTATGC 426
Query 526 ATTTTAATGCGCGATGCTAAACGTGGTGGTGGCTCGGTGATAAACAT-TTCATCAGTATC 584
|||||||||||||| ||||||| |||||||||||||||||| ||| || |||||| |
Sbjct 427 ATTTTAATGCGCGACGCTAAAC---GTGGTGGCTCGGTGATAAGCATATT-ATCAGTCT- 481
Query 585 CTGG-CTCCACCGCGGTCAGGTGCCTGGTGGAGTCGCATACGCTTGTTCTAAAGGCGGTG 643
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 482 CTGGCCTCCACCGCGGTCAGGTGCCTGGTGGAGTCGCGTATGCTTGTTCTAAAGGCGGTG 541
Query 644 TTGACACCATGACAAGGATGATGGCACTTGAGTTAGGTGTTTACAAGATCAGAGTGAATT 703
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 542 TTGACACCATGACAAGGATGATGGCTGTTGGGTTAGGTGTTTACAAGATCAGAGTGAATT 601
Query 704 CGATCGCACCAGGGCTTTTAAAGTCAGAGATCACACAAGGTCTTATGCAAAAAGAGTGGC 763
|||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 602 CGATCGCACCGGGGCTTTTCAGGTCAGAGATCACACAAGGTCTTATGCAGAAAGAGTGGC 661
Query 764 TCAAGACCGTTA-TCGAGA-GGACAGTCCCATTAAAGGTACAACAGACAGTGGATCCGGG 821
| |||| |||| | || | ||| |||||||||||||||||||||| |||||||||||||
Sbjct 662 TAAAGAAAGTTAAT-GA-ACGGATAGTCCCATTAAAGGTACAACAGGCAGTGGATCCGGG 719
Query 822 GCTTACTTCTCTCCTACGCTACCTCGTTCACGACTCGTCTAAATATATCTCCGGGAATAC 881
|||||| |||||| | ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 720 GCTTACATCTCTCGTTCGCTACCTCATTCACGACTCGTCTCAATATATCTCCGGGAATAC 779
Query 882 ATACATTGTCGATGCTGGAGCTTCATTGGTCGGTCTGCCCATTTTTTCATCTCTCTAA 939
||||||||||||| | ||| || ||||| ||||| |||| ||||||||||||||||||
Sbjct 780 ATACATTGTCGATTCCGGAACTACATTGCTCGGTGTGCCTATTTTTTCATCTCTCTAA 837
Score = 372 bits (201), Expect = 3e-102
Identities = 221/231 (96%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 133 TGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAG 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 TGTGAACTTAAAGACAAAGTGGTTCTTGTGACAGGAGCTTCCTCTGGTATAGGAAGAGAG 156
Query 193 GTATGTCTTGATCTAGCCAAAGCTGGCTGTAAGATTATCGCAGCAGCTCGTCGTGTCGAT 252
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 157 GTATGTCTTGATCTAGCCAAAGCTGGCTGTAAGATTATCGCAGAAGCTCGTCGTGTCGAT 216
Query 253 CGTCTCAAATCTCTCTGCTCTGAAATAAATCGCTTCGAATATTCAGCTGGAATTCAAGCT 312
|||||||||||||||||||||||||||||| |||||||||||||| | ||| | |||||
Sbjct 217 CGTCTCAAATCTCTCTGCTCTGAAATAAATAGCTTCGAATATTCAACCGGACTCCAAGCC 276
Query 313 GAAGCTCTTGAGCTAGACGTTTCATCAGACGCAGCCACCGTTCAAAAAGCG 363
| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 277 GCAGCTCTTGAGCTAGACGTTTCATCAGACGCACCCACCATTCAAAAAGCG 327
Score = 69.4 bits (37), Expect = 4e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 393 GATCGATGCGTTGATCAACAATGCGGGATTTAGAGGCAAT 432
|||||||| |||||||||||||||||||||||||||||||
Sbjct 327 GATCGATGTGTTGATCAACAATGCGGGATTTAGAGGCAAT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5