BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17850.1

Length=506
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906617 jgi|Araly1|906617|Al_scaffold_0003_3745                    649    0.0  


> Ahg906617 jgi|Araly1|906617|Al_scaffold_0003_3745
Length=477

 Score =  649 bits (351),  Expect = 0.0
 Identities = 438/479 (91%), Gaps = 10/479 (2%)
 Strand=Plus/Plus

Query  36   ATGGATTCTTTACACGTTCTTAGATCC--T-TTCTTCTTC-T-TT-TCATTGTTTTTAAT  89
            |||||||||||||||||| | | ||||  | ||||||||| | || ||||||||| || |
Sbjct  1    ATGGATTCTTTACACGTTATAAAATCCTTTCTTCTTCTTCTTCTTATCATTGTTTCTATT  60

Query  90   CATCTTCCTCGCACAACTACATCAATGTCAGAACCAAAAGTCATTACCATCGATGTAAAC  149
             ||||||||||||| ||| ||||||  |||||||||||||| ||||| ||||||||||  
Sbjct  61   GATCTTCCTCGCACGACTTCATCAAACTCAGAACCAAAAGTTATTACTATCGATGTAAGT  120

Query  150  CAAGCTCAGAAACTTCTTGATTCTGGCTACACGTTTCTTGATGTCAGAACTGTTGAAGAG  209
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  CAAGCCCAGAAACTTCTTGATTCTGGCTACACGTTTCTTGATGTCAGAACTGTTGAAGAA  180

Query  210  TTCAAGAAAGGCCATGTTGATTCAGA-AAATGTCTTCAATGTTCCTTACTGGTTATATAC  268
            ||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct  181  TTCGAGGAAGGCCATGTTGATTCAGAGAAA-GTCTTCAATGTTCCTTACTGGTTATATTC  239

Query  269  TCCACAAGGTCAAGAGATTAACCCTAATTTCTTGAAACATGTTTCATCTCTCTGTAACCA  328
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TCCACAGGGGCAAGAGATTAACCCTAATTTCTTGAAACATGTTTCATCTCTCTGTAACCA  299

Query  329  AACCGATCATCTCATCCTGGGATGTAAATCTGGAGTTAGATCATTACATGCTACCAAATT  388
            |||| |||||||| || ||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct  300  AACCAATCATCTCGTCGTGGGATGTAAATCGGGAGTTAGATCATTATATGCTACCAAAGT  359

Query  389  TCTTGTTTCTTCCGGCTTCAAGACTGT-AAGAAACATGGACGGTGGTTACATTGCTTGGG  447
            |||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct  360  TCTTGTTTCTTCTGGCTTCAAGAATGTTAA-AAACATGGACGGTGGTTACATTGCTTGGG  418

Query  448  TCAACAAGAGATTCCCAGTTAAAGTGGAACACAAGGAACTCAAGTATGATGAGCTTTGA  506
            || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  TCGACAAGAGATTTCCAGTTAAAGTGGAACACAAGGAACTCAAGTATGATGAGCTTTGA  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18390993898


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5