BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17860.1 Length=762 Score E Sequences producing significant alignments: (Bits) Value Ahg343407 jgi|Araly1|343407|fgenesh1_pg.C_scaffold_3003170 1103 0.0 Ahg944275 jgi|Araly1|944275|scaffold_700504.1 433 1e-120 > Ahg343407 jgi|Araly1|343407|fgenesh1_pg.C_scaffold_3003170 Length=897 Score = 1103 bits (597), Expect = 0.0 Identities = 704/756 (93%), Gaps = 5/756 (1%) Strand=Plus/Plus Query 1 ATGGATTTGGCTAAAGTCTCTTGCTTTCTCTTAGCGATTATGTTTTTCATCAATGGTGGT 60 |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 1 ATGGGTTTGGCTAAAGTCTCTTGCTTTCTCTTTGCGATTCTGTTTTTCATCAATGGTGGT 60 Query 61 TCCTCCACCACGTTCACCATCGTTAACCAGTGTAACTACACCGTCTGGCCGGGACTTCTC 120 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TCCTCCACCACTTTCACCATCGTTAACCAGTGTAACTACACCGTCTGGCCTGGACTTCTC 120 Query 121 TCCGGCGCCGGCACCGCTCCATTACCCACCACTGGTTTCTCCCTCAACTCCTTTGAGTCA 180 ||||||||||||||| |||||||||| ||||| ||||||||||||| ||| | |||||| Sbjct 121 TCCGGCGCCGGCACCACTCCATTACCAACCACCGGTTTCTCCCTCAGCTCGTCCGAGTCA 180 Query 181 CGACTCATCTCCATACCCGCCGCTTGGTCCGGCCGCATATGGGGACGCACGCTCTGCAAC 240 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 CGACTCATCTCCATACCCGCCGCCTGGTCCGGCCGCATATGGGGACGCACGCTCTGCAAC 240 Query 241 CAAAACGA-AATCACCGGAATATTCACTTGCGTCACCGGCGACTGCGGCTCATCCCAAAT 299 |||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 241 CAAAACGAGAA-CACCGGAAAATTCACTTGCGTCACCGGCGACTGTGGCTCATCCCAAAT 299 Query 300 CGAATGCTCTGGCGCAGGAGCAATCCCTCCAGCTACACTAGCCGAATTCACACTCAACGG 359 ||||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 300 CGAATGCTCCGGAGCAGGAGCAATCCCTCCAGCTACATTAGCCGAGTTCACACTCAACGG 359 Query 360 CGCCGAAAATCTAGATTTCTACGACGTTAGCCTCGTCGATGGTTACAACATCCCAATGAC 419 || || ||| || ||||||| |||||| |||||||||||||| |||||| |||||||||| Sbjct 360 CGACGGAAACCTCGATTTCTTCGACGTCAGCCTCGTCGATGGCTACAACGTCCCAATGAC 419 Query 420 GATCGTTCCTTACGGCGGAGCTATCGGAGTCGGTAAGTGTAACGCAACGGGTTGCGCGGC 479 |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 420 GATCGTCCCTCACGGCGGAGCTATTGGAGTCGGTAAGTGTAACGCAACGGGTTGCGCGGT 479 Query 480 GGATCTCAACGGCTTATGTCCGGAGCAGCTGAAAGTAACGGTTGAAGCGGCTGGAACGGG 539 |||||| |||||| |||||||||| |||||||||||||| |||||||| | ||||||| Sbjct 480 GGATCTTAACGGCGTATGTCCGGAACAGCTGAAAGTAACAGTTGAAGC-G--GGAACGGC 536 Query 540 TGCTGTGGCGTGCAAGAGCGCTTGTGAGGCGTTTGGAACGCCGGAGTTTTGTTGTAACGG 599 |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| || Sbjct 537 TGCTGTAGCGTGCAAGAGCGCTTGCGAGGCGTTTGGAACGCCGGAGTTTTGCTGTAGTGG 596 Query 600 CGCGTTTGGAACGCCGGACACGTGTCAGCCGAGTGAGTACTCTGTTTTCTTTAAGAAAAC 659 ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| | Sbjct 597 CGCGTTTGGAACGCCGGACACGTGTAAGCCGAGTGAGTACTCTGGTTTCTTCAAGAAAGC 656 Query 660 TTGTCCGACGGCTTATAGTTACGCTTATGACGACGGCACAAGCACTTTTACTTGCTCCGG 719 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 657 TTGTCCGACGGCTTATAGTTACGCTTACGACGACGGTACAAGCACTTTTACTTGCTCCGG 716 Query 720 TGCTGATTACGTCATCACTTTCTGTCCTTCTCCTTC 755 |||||||||||||||||||||||||||||||||||| Sbjct 717 TGCTGATTACGTCATCACTTTCTGTCCTTCTCCTTC 752 > Ahg944275 jgi|Araly1|944275|scaffold_700504.1 Length=949 Score = 433 bits (234), Expect = 1e-120 Identities = 577/736 (78%), Gaps = 49/736 (7%) Strand=Plus/Plus Query 44 TTTTCATCAATGGTGGTTCCTCCACCACGTTCACCATCGTTAACCAGTGTAACTACACCG 103 |||| ||| |||| | |||||||||||| |||||||||||||||||||| | |||||||| Sbjct 64 TTTTAATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGCAGCTACACCG 123 Query 104 TCTGGCCGGGACTTCTCTCCGGCGCCGGCACCGCTCCATTACCCACCACTGGTTTCTCCC 163 ||||||| |||||||||||||||||||| ||| |||| ||||| || || || |||||| Sbjct 124 TCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCAACAACCGGATTCTCCT 183 Query 164 TCAACTCC-TTTGAGTCACGACTCATCTCC-ATACCCGCCGCTTGGTCCGGCCGCATATG 221 | ||| || ||| |||| ||||| || || |||||||| ||||||||||| ||||| Sbjct 184 TAAAC-CCGACCGAGACACGTGTCATC-CCAATCCCCGCCGCCTGGTCCGGCCGTATATG 241 Query 222 GGGACGCACGCTCTGCAAC-CAAAACGAAATCACC-GGAATATTCACTTGCGTCACCGGC 279 ||| || || |||||| || ||| ||| || |||| |||| |||||||||| ||||||| Sbjct 242 GGGTCGTACTCTCTGC-ACACAAGACGCAACCACCGGGAA-ATTCACTTGCATCACCGGA 299 Query 280 GACTGCGGCTCATCCCA-AATCGAATGCTCTGGCGCAGGAGCAAT-C-CCTCCAGCTACA 336 ||||| || || | ||| | |||||||| || | || || | | || || || ||| Sbjct 300 GACTGTGGTTC-TTCCACCGTAGAATGCTCCGGATCCGGGGC--TGCACCGCCTGCGACA 356 Query 337 CTAGCCGAATTCACAC-TCAACGGCGCCGAA-AATCTAGATTTCTACGACGTTAGCCTCG 394 || || |||||||| | | ||||| ||| || || |||||||||||||| || |||| Sbjct 357 CTCGCAGAATTCAC-CTTGAACGGAGCC-AATGGCCTCGATTTCTACGACGTCAGTCTCG 414 Query 395 TCGATGGTTACAACATCCCAATGACGATCGTTCCTTA---CGGCGGAGCTAT-C-GGA-- 447 |||| |||||||||||||| ||||| ||||| ||| | ||||||| || | ||| Sbjct 415 TCGACGGTTACAACATCCCGATGACCATCGTCCCTCAGGGAGGCGGAG--ATGCAGGAGG 472 Query 448 -GT---CGGTAAGTGTAACG-CAACGGGTTGCGCGGCGGATCTCAACGGCT-TATGTCCG 501 || ||| || || ||| | || || |||| ||||| || ||||| | ||||| Sbjct 473 CGTCGCCGGGAACTG-CACGACCACCGGCTGCGTTGCGGAGCTTAACGG-TCCGTGTCCT 530 Query 502 GAGCAGCTGAAAGTAACGGTTGAAGCGGCTGGAACGGGTGCTGTGGCGTGCAAGAGCGCT 561 | ||||||||||| || | | || | ||||| | | || || ||||| ||||| Sbjct 531 GCTCAGCTGAAAGT---GG-CG-A-CGACGGGAACTGAAGGAGTAGCTTGCAAAAGCGCG 584 Query 562 TGTGAGGCGTTTGGAACGCCGGAGTTTTGTTGTAACGGCGCGTTTGGAACGCCGGACACG 621 |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||| Sbjct 585 TGTGAGGCGTTTGGGACGCCGGAGTATTGCTGTAGCGGCGCGTTTGGAACGCCGGACACG 644 Query 622 TGTCAGCCGAGTGAGTACTCTG-TTTTCTTTAAGAAA-ACTTGTCCGACG-GCTTATAGT 678 ||| ||||||| |||||||| | ||||| || ||| | ||||||| | ||||||||| Sbjct 645 TGTAAGCCGAGCGAGTACTC-GCAGTTCTTCAA-AAACGCGTGTCCGA-GAGCTTATAGT 701 Query 679 TACGCTTATGACGACGGCACAAGCACTTTTACTTGCT-CCGGTGCTGATTACGTCATCAC 737 |||||||| |||||||| || || || || ||||| | ||| ||||||||||||||||| Sbjct 702 TACGCTTACGACGACGGAACTAGTACCTTCACTTG-TGGCGGAGCTGATTACGTCATCAC 760 Query 738 TTTCTGTCCTTCTCCT 753 |||||||||||||||| Sbjct 761 TTTCTGTCCTTCTCCT 776 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28096589829 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5