BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17860.1
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343407 jgi|Araly1|343407|fgenesh1_pg.C_scaffold_3003170 1103 0.0
Ahg944275 jgi|Araly1|944275|scaffold_700504.1 433 1e-120
> Ahg343407 jgi|Araly1|343407|fgenesh1_pg.C_scaffold_3003170
Length=897
Score = 1103 bits (597), Expect = 0.0
Identities = 704/756 (93%), Gaps = 5/756 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTGGCTAAAGTCTCTTGCTTTCTCTTAGCGATTATGTTTTTCATCAATGGTGGT 60
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1 ATGGGTTTGGCTAAAGTCTCTTGCTTTCTCTTTGCGATTCTGTTTTTCATCAATGGTGGT 60
Query 61 TCCTCCACCACGTTCACCATCGTTAACCAGTGTAACTACACCGTCTGGCCGGGACTTCTC 120
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCCTCCACCACTTTCACCATCGTTAACCAGTGTAACTACACCGTCTGGCCTGGACTTCTC 120
Query 121 TCCGGCGCCGGCACCGCTCCATTACCCACCACTGGTTTCTCCCTCAACTCCTTTGAGTCA 180
||||||||||||||| |||||||||| ||||| ||||||||||||| ||| | ||||||
Sbjct 121 TCCGGCGCCGGCACCACTCCATTACCAACCACCGGTTTCTCCCTCAGCTCGTCCGAGTCA 180
Query 181 CGACTCATCTCCATACCCGCCGCTTGGTCCGGCCGCATATGGGGACGCACGCTCTGCAAC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CGACTCATCTCCATACCCGCCGCCTGGTCCGGCCGCATATGGGGACGCACGCTCTGCAAC 240
Query 241 CAAAACGA-AATCACCGGAATATTCACTTGCGTCACCGGCGACTGCGGCTCATCCCAAAT 299
|||||||| || |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CAAAACGAGAA-CACCGGAAAATTCACTTGCGTCACCGGCGACTGTGGCTCATCCCAAAT 299
Query 300 CGAATGCTCTGGCGCAGGAGCAATCCCTCCAGCTACACTAGCCGAATTCACACTCAACGG 359
||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 300 CGAATGCTCCGGAGCAGGAGCAATCCCTCCAGCTACATTAGCCGAGTTCACACTCAACGG 359
Query 360 CGCCGAAAATCTAGATTTCTACGACGTTAGCCTCGTCGATGGTTACAACATCCCAATGAC 419
|| || ||| || ||||||| |||||| |||||||||||||| |||||| ||||||||||
Sbjct 360 CGACGGAAACCTCGATTTCTTCGACGTCAGCCTCGTCGATGGCTACAACGTCCCAATGAC 419
Query 420 GATCGTTCCTTACGGCGGAGCTATCGGAGTCGGTAAGTGTAACGCAACGGGTTGCGCGGC 479
|||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GATCGTCCCTCACGGCGGAGCTATTGGAGTCGGTAAGTGTAACGCAACGGGTTGCGCGGT 479
Query 480 GGATCTCAACGGCTTATGTCCGGAGCAGCTGAAAGTAACGGTTGAAGCGGCTGGAACGGG 539
|||||| |||||| |||||||||| |||||||||||||| |||||||| | |||||||
Sbjct 480 GGATCTTAACGGCGTATGTCCGGAACAGCTGAAAGTAACAGTTGAAGC-G--GGAACGGC 536
Query 540 TGCTGTGGCGTGCAAGAGCGCTTGTGAGGCGTTTGGAACGCCGGAGTTTTGTTGTAACGG 599
|||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 537 TGCTGTAGCGTGCAAGAGCGCTTGCGAGGCGTTTGGAACGCCGGAGTTTTGCTGTAGTGG 596
Query 600 CGCGTTTGGAACGCCGGACACGTGTCAGCCGAGTGAGTACTCTGTTTTCTTTAAGAAAAC 659
||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |
Sbjct 597 CGCGTTTGGAACGCCGGACACGTGTAAGCCGAGTGAGTACTCTGGTTTCTTCAAGAAAGC 656
Query 660 TTGTCCGACGGCTTATAGTTACGCTTATGACGACGGCACAAGCACTTTTACTTGCTCCGG 719
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 657 TTGTCCGACGGCTTATAGTTACGCTTACGACGACGGTACAAGCACTTTTACTTGCTCCGG 716
Query 720 TGCTGATTACGTCATCACTTTCTGTCCTTCTCCTTC 755
||||||||||||||||||||||||||||||||||||
Sbjct 717 TGCTGATTACGTCATCACTTTCTGTCCTTCTCCTTC 752
> Ahg944275 jgi|Araly1|944275|scaffold_700504.1
Length=949
Score = 433 bits (234), Expect = 1e-120
Identities = 577/736 (78%), Gaps = 49/736 (7%)
Strand=Plus/Plus
Query 44 TTTTCATCAATGGTGGTTCCTCCACCACGTTCACCATCGTTAACCAGTGTAACTACACCG 103
|||| ||| |||| | |||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 64 TTTTAATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGCAGCTACACCG 123
Query 104 TCTGGCCGGGACTTCTCTCCGGCGCCGGCACCGCTCCATTACCCACCACTGGTTTCTCCC 163
||||||| |||||||||||||||||||| ||| |||| ||||| || || || ||||||
Sbjct 124 TCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCAACAACCGGATTCTCCT 183
Query 164 TCAACTCC-TTTGAGTCACGACTCATCTCC-ATACCCGCCGCTTGGTCCGGCCGCATATG 221
| ||| || ||| |||| ||||| || || |||||||| ||||||||||| |||||
Sbjct 184 TAAAC-CCGACCGAGACACGTGTCATC-CCAATCCCCGCCGCCTGGTCCGGCCGTATATG 241
Query 222 GGGACGCACGCTCTGCAAC-CAAAACGAAATCACC-GGAATATTCACTTGCGTCACCGGC 279
||| || || |||||| || ||| ||| || |||| |||| |||||||||| |||||||
Sbjct 242 GGGTCGTACTCTCTGC-ACACAAGACGCAACCACCGGGAA-ATTCACTTGCATCACCGGA 299
Query 280 GACTGCGGCTCATCCCA-AATCGAATGCTCTGGCGCAGGAGCAAT-C-CCTCCAGCTACA 336
||||| || || | ||| | |||||||| || | || || | | || || || |||
Sbjct 300 GACTGTGGTTC-TTCCACCGTAGAATGCTCCGGATCCGGGGC--TGCACCGCCTGCGACA 356
Query 337 CTAGCCGAATTCACAC-TCAACGGCGCCGAA-AATCTAGATTTCTACGACGTTAGCCTCG 394
|| || |||||||| | | ||||| ||| || || |||||||||||||| || ||||
Sbjct 357 CTCGCAGAATTCAC-CTTGAACGGAGCC-AATGGCCTCGATTTCTACGACGTCAGTCTCG 414
Query 395 TCGATGGTTACAACATCCCAATGACGATCGTTCCTTA---CGGCGGAGCTAT-C-GGA-- 447
|||| |||||||||||||| ||||| ||||| ||| | ||||||| || | |||
Sbjct 415 TCGACGGTTACAACATCCCGATGACCATCGTCCCTCAGGGAGGCGGAG--ATGCAGGAGG 472
Query 448 -GT---CGGTAAGTGTAACG-CAACGGGTTGCGCGGCGGATCTCAACGGCT-TATGTCCG 501
|| ||| || || ||| | || || |||| ||||| || ||||| | |||||
Sbjct 473 CGTCGCCGGGAACTG-CACGACCACCGGCTGCGTTGCGGAGCTTAACGG-TCCGTGTCCT 530
Query 502 GAGCAGCTGAAAGTAACGGTTGAAGCGGCTGGAACGGGTGCTGTGGCGTGCAAGAGCGCT 561
| ||||||||||| || | | || | ||||| | | || || ||||| |||||
Sbjct 531 GCTCAGCTGAAAGT---GG-CG-A-CGACGGGAACTGAAGGAGTAGCTTGCAAAAGCGCG 584
Query 562 TGTGAGGCGTTTGGAACGCCGGAGTTTTGTTGTAACGGCGCGTTTGGAACGCCGGACACG 621
|||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 585 TGTGAGGCGTTTGGGACGCCGGAGTATTGCTGTAGCGGCGCGTTTGGAACGCCGGACACG 644
Query 622 TGTCAGCCGAGTGAGTACTCTG-TTTTCTTTAAGAAA-ACTTGTCCGACG-GCTTATAGT 678
||| ||||||| |||||||| | ||||| || ||| | ||||||| | |||||||||
Sbjct 645 TGTAAGCCGAGCGAGTACTC-GCAGTTCTTCAA-AAACGCGTGTCCGA-GAGCTTATAGT 701
Query 679 TACGCTTATGACGACGGCACAAGCACTTTTACTTGCT-CCGGTGCTGATTACGTCATCAC 737
|||||||| |||||||| || || || || ||||| | ||| |||||||||||||||||
Sbjct 702 TACGCTTACGACGACGGAACTAGTACCTTCACTTG-TGGCGGAGCTGATTACGTCATCAC 760
Query 738 TTTCTGTCCTTCTCCT 753
||||||||||||||||
Sbjct 761 TTTCTGTCCTTCTCCT 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28096589829
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5