BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17870.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480687 jgi|Araly1|480687|fgenesh2_kg.3__3388__AT2G17870.1 1360 0.0
> Ahg480687 jgi|Araly1|480687|fgenesh2_kg.3__3388__AT2G17870.1
Length=1174
Score = 1360 bits (736), Expect = 0.0
Identities = 1081/1231 (88%), Gaps = 90/1231 (7%)
Strand=Plus/Plus
Query 56 ATGGAAGATCAATCGGCGGCGAGATCTATCGGAAAAGTTAGTTGGTTTAGCGATGGAAAA 115
||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||
Sbjct 1 ATGGAAGATCAATCGGCGGCGAGATTTATCGGAAAAGTTAATTGGTTTGGCGATGGTAAA 60
Query 116 GGCTACGGTTTCATTACTCCCGATGATGGCGGCGAAGAGCTTTTTGTTCATCAATCCTCA 175
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 GGCTACGGTTTCATTACTCCCGATGATGGAGGCGAAGAGCTTTTTGTTCATCAATCTTCA 120
Query 176 ATTGTCTCCGATGGATT-CCGTAGCTTGACTCTTGGTGAATCGGTTGAATACGAAATCGC 234
|| ||||||||||| || ||||||||| ||| |||||||||||||||||||| |||| |
Sbjct 121 ATCGTCTCCGATGG-TTACCGTAGCTTAACTGTTGGTGAATCGGTTGAATACTCAATCAC 179
Query 235 GCTTGGAAGCGACGGAAAGACTAAGGCCATTGAA-GTTACTGCTCCCGGCGGCGGTTCAC 293
||||||||||||||| |||||||||||| || || ||||||||||| ||||||||||| |
Sbjct 180 GCTTGGAAGCGACGGGAAGACTAAGGCCGTT-AATGTTACTGCTCCTGGCGGCGGTTCTC 238
Query 294 TTAATAAGAAGGAAAACAGCTCCCGTGGATCCGGAGGTAATTGTTTTAATTGCGGTGAGG 353
|||||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||
Sbjct 239 TTAATAAGAAGGAAAATAGCTCCCGTGTAAACGGTGGTAGTTGTTTTAATTGCGGTGAGG 298
Query 354 TTGGTCATATGGCTAAGGATTGTGACGGTGGAAGTGGTGGGAAAAGCTTTGGAGGTGGTG 413
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 TTGGTCATATGGCTAAGGATTGTGACGGTGGTGGTGGTGGGAAAAGCTTTGGAGGTGGTG 358
Query 414 GTGGTCGTAGATCTGGCGGCGAAGGTGA-ATGTTACATGTGTGGTGATGTGGGACACTTC 472
|||||||||||||||| || |||||| | |||||| |||||||||||||||||||||||
Sbjct 359 GTGGTCGTAGATCTGGGGGTGAAGGT-ACCTGTTACGTGTGTGGTGATGTGGGACACTTC 417
Query 473 GCTAGGGATTGTAGGCAAAGCGGTGGTGGAAACAGCGGCGGAGGAGGAGGAGGTGGTCGT 532
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 418 GCTAGGGATTGTAGGCAAAGCGGTGGTGGAAACAGTGGTGGAGGAGGAGGTGGTGGTC-- 475
Query 533 CCGTGTTACAGTTGCGGTGAGGTTGGTCATTTGGCAAAGGATTGTCGTGGTGGTTCTGGT 592
| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 C-GTGTTATAGTTGCGGAGAGGTTGGTCATTTGGCAAAGGATTGTCGTGGTGGTTCTGGT 534
Query 593 GGAAACAGATACGGAGGAGGTGGTGGTCGTGGATCTGGCGGTGATGGATGCTACATGTGT 652
|| || ||||||||||| ||||||||||||||||||| |||||||||||||| | |||
Sbjct 535 GGGAATAGATACGGAGG---TGGTGGTCGTGGATCTGGCAGTGATGGATGCTACCTTTGT 591
Query 653 GGTGGTGTGGGACATTTCGCTAGGGATTGTAGGCAAAACGGCGGTGGAAACGTTGGAGGT 712
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 592 GGTGGTGTTGGACATTTCGCTAGGGATTGTAGGCAAAATGGCAGTGGAAACGTTGGAGGT 651
Query 713 GGTGG---------AAGCACTTGTTATACCTGTGGCGGAGTTGGCCACATTGCGAA-AGT 762
||||| || |||||||||||||||||||||||||||||||||||| || |||
Sbjct 652 GGTGGCGGCGGTGGAAACACTTGTTATACCTGTGGCGGAGTTGGCCACATTGC-AAGAGT 710
Query 763 TTGCACCAGCAAGATACCTTCtggtggtggtggtggtggtCGTGCTTGTTACGAATGTGG 822
|||||||||||||| |||| ||||||||| |||| || ||||||||||
Sbjct 711 TTGCACCAGCAAGAGACCTGCTGGTGGTG-----------CGTG-TT---ACGAATGTGG 755
Query 823 AGGAACTGGCCATTTGGCTCGTGACTGTGATCGGAGAGGAAGTGGAAGCAGCGG------ 876
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 AGAAACTGGCCATTTGGCTCGTGACTGTGATCGGAGAGGAAGTGGAAGCAGCGGTGGTGG 815
Query 877 AGGTGGCGGTGGCAGTA--A----CAAGTGCTTCATCTGCGGCAAGGAAGGTCACTTTGC 930
|||||| |||||| || | || |||||||| ||||||||||||||||||||||||
Sbjct 816 AGGTGGAGGTGGCGGTGGTAGTGGCAGGTGCTTCAACTGCGGCAAGGAAGGTCACTTTGC 875
Query 931 GAGGGAATGTACTTCGGTTGCTTAACAAAAAGATGCAAAGAAGAAGAGTAATGTTCATAA 990
||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 876 TAGGGAATGTTCTTCGGTTACTTAACAAAAAGATGCAAAGAAGA-G--TAATGTTCATAT 932
Query 991 ACCTCTTTTGTTTTCTATTAAAATCTACCTAATGCTCCTTTTTGGTGACTATAATGTGAT 1050
|| ||| |||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 933 AC-TCT----------ATTAAA-TCTACCTAA-GCTCCGTTTTGGTGACTATAATGTGAT 979
Query 1051 TGCTAAAGTCGTTTAGGATGTTTAAGAATGGTTGTTTTGGGAGTTTTTGATCTCTCTATA 1110
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 980 TGCTAAAGTCGTTTAGGATGTTTACGAATGGTTGTTTTGGGAGATTTTGATCTCT--ATA 1037
Query 1111 TTACTCTTTTGACTGGTTTAT-GCAA-CCTGTTCACTGCTTTTGTTGATG------CCAT 1162
||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||
Sbjct 1038 TTACTCTTTTGACTGGTTT-TCGCAAACCTGTTCACTGCTTTTGTTGATGTTGATGCCAT 1096
Query 1163 AAGTTTGAGATCTTGAATGATATGTGTGCTTGCTTATTTACAGTTTCTTGTCTTTCCTTG 1222
|||||||||| |||||||||||||||||| | ||||||||| |||||||
Sbjct 1097 AAGTTTGAGA-CTTGAATGATATGTGTGC------A------GTTTCTTGTTTTTCCTTA 1143
Query 1223 CAATGAGTGTGATTGTATGACTTGAAAATTC 1253
||||||||||| |||||||||||||||||||
Sbjct 1144 CAATGAGTGTGCTTGTATGACTTGAAAATTC 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5