BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17880.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480688 jgi|Araly1|480688|fgenesh2_kg.3__3389__AT2G17880.1 861 0.0
> Ahg480688 jgi|Araly1|480688|fgenesh2_kg.3__3389__AT2G17880.1
Length=752
Score = 861 bits (466), Expect = 0.0
Identities = 648/732 (89%), Gaps = 28/732 (4%)
Strand=Plus/Plus
Query 62 TGACCCAACCCGGTTCGATTTTGCTTAACCGGACAAGATACATTAATCTGCCTAATCTTC 121
|||||||||||||||||| ||||||||||||||| | || | | | |||||||
Sbjct 40 TGACCCAACCCGGTTCGACTTTGCTTAACCGGAC-A-AT--A-T-A-------AATCTTC 86
Query 122 AATTATTTAAAAGCTAACTAAACGTTATACGTACTAATCACTTCTTCCCCTAT-AAATAA 180
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 87 AATTATTTAAAAGCTAACTAAACGTTAAACGTACTAATCACTTCTTCCCTTATAAAATAA 146
Query 181 A-CCTTTCTAATTTCTCATCTCAAATCACACTGCATCACAAAAC-CCAAATCGGAACTTA 238
| ||| |||||||||||||||| || | | |||||| | || |||||| |||
Sbjct 147 AGCCTCTCTAATTTCTCATCTC-CTTC-CTC-AAATCACACTGCATCACATCGGAGCTTT 203
Query 239 AACCAAAAGACAAACA-AAAACGCCGTCGTTTCACGATGctttcttcttccccaaccttc 297
|||||||| | ||| | |||||||||||||||||| ||||| ||||||||| ||| ||||
Sbjct 204 AACCAAAAAATAAAAATAAAACGCCGTCGTTTCACAATGCTCTCTTCTTCCTCAAGCTTC 263
Query 298 ttcgctactccatttctctcttcttcttcttcttcttctccgtcgttctcttctacttcA 357
|||||||| ||| | | || || |||||||||||||||||| |||||||| || ||||
Sbjct 264 TTCGCTACCCCA--T-T-TC-TC-TCTTCTTCTTCTTCTCCGCCGTTCTCTCCTGTTTCA 317
Query 358 CCACCGTCACGCATTTCCCGGATCTCGCCGTCGCTTTCTACAACCACCGCGTCCTACACC 417
||||||||||| ||| ||||||||||||||| |||||| |||| ||||| |||||||||
Sbjct 318 CCACCGTCACGTGTTTTCCGGATCTCGCCGTCTCTTTCTGCAACAACCGCATCCTACACC 377
Query 418 TGCGCCGAAGATCTACCGAGATTACGCCAAATCCCGCAGCGATTTTCAGCAACCGCGTCT 477
|||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 378 TGCGCCGATGATCCACCGAGATTACGCCAAATTCCGCAGCGATTTTCAGCGACCGCGTCT 437
Query 478 CTCTACGAGATCCTTGAAATTCCCGTCGGCTCGACGAGTCAAGAGATCAAATCAGCTTAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 438 CTCTACGAGATCCTTGAAATTCCCGTCGGCTCGACGAGTCAAGAGATCAAATCGGCTTAC 497
Query 538 CGGCGACTAGCCAGGATCTGTCATCCCGATGTAGCGAGAAATAGTCGGGATAACTCGTCG 597
|| ||| |||| |||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 498 CGACGATTAGCTAGGATCTGTCATCCCGATGTAGCGGGAAATAGTCGGAATAGCTCGTCG 557
Query 598 GCGGACGA-TTTCATGAAGATCCACGCAGCGTATTGCACGCTTTCGGATCCCGAGAAACG 656
|||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 558 GCGGACGAATTT-ATGAAGATCCACGCGGCGTATTGCACGCTTTCGGATCCCGAGAAACG 616
Query 657 CGCCGTTTATGATCGGAGGACTCTTCTTCGGAGCCGGCCGTTAACGGCTGGATACGGCAG 716
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 617 CGCCGTTTATGATCGGAGGAATCTTCGTCGGAGCCGGCCGTTAACTGCTGGATACGGCAG 676
Query 717 TTACGGTGGACGGAATTGGGAAACCGATCAGTGCTGGTAGCGAGTTGACTCGATGTGTCG 776
|||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 677 TTACGGCGGACGGAATTGGGAAACTGATCAGTGCTGGTAGCGAGTTGACTCGGTTTGTCG 736
Query 777 AGTTGGTCCAAA 788
||||| |||||
Sbjct 737 AGTTGACCCAAA 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5