BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17890.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906621 jgi|Araly1|906621|Al_scaffold_0003_3749 2732 0.0
Ahg328146 jgi|Araly1|328146|fgenesh1_pm.C_scaffold_7000373 1397 0.0
> Ahg906621 jgi|Araly1|906621|Al_scaffold_0003_3749
Length=1701
Score = 2732 bits (1479), Expect = 0.0
Identities = 1618/1687 (96%), Gaps = 2/1687 (0%)
Strand=Plus/Plus
Query 31 TCCTCCGGCCACAACCGCAGTAGCCGGAATCCCCACCCA-CATCCTCCTCTCACGGTTGT 89
|||||||||||||||||||||||||||||| || | ||| ||||||||||||||||| |
Sbjct 16 TCCTCCGGCCACAACCGCAGTAGCCGGAAT-CCTAACCACCATCCTCCTCTCACGGTGGC 74
Query 90 TAAATCCAGACCACCGCGATCTCCATGTTCCTTCATGGCCGTTACGATCCAAAAGGATCA 149
|||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 75 TAAAACCAGACCACCGCAATCTCCATGTTCTTTCATGGCGGTTACGATCCAAAAGGATCA 134
Query 150 TAGAACGCAACCGCGACGCAATGCAACGGCTAAGAAAACGCCGACGCGGCATACGCCACC 209
||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 135 TAGGACGCAACCGCGACGCAATGCGGCGGCTAAGAAAACGCCGACGCGGCAAACGCCACC 194
Query 210 GCACGGGAAAGTGAGAGAGAAAGTTATAAGCAATAACGGTAGGAGACATGGAGAAACGAT 269
|||||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 195 GCACGGGAGAGGGAGAGAGAAAGTTATTAGCAATAACGGTAGGAGACATGGAGAAGCGAT 254
Query 270 CCCCTACGGTAAGCGTGTAGATTTTGGGTACGCTAAAGATTTTGATCACCGTTACACCAT 329
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 255 CCCCTACGGTAAGCGTATCGATTTCGGGTACGCTAAAGATTTTGATCACCGTTACACCAT 314
Query 330 TGGAAAATTGCTTGGACATGGTCAATTTGGTTATACATATGTCGCTACCGATaaaaaaaC 389
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TGGAAATTTGCTTGGACATGGTCAATTTGGTTATACATATGTCGCTACCGATAAAAAAAC 374
Query 390 CGGTGATCGTGTCGCCGTCAAGAAGATCGATAAGGCCAAGATGACAATTCCGATAGCTGT 449
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CGATGATCGTGTCGCGGTCAAGAAGATCGATAAGGCCAAGATGACAATTCCGATAGCTGT 434
Query 450 GGAAGATGTAAAGAGAGAGGTGAAGATATTACAAGCTTTAACTGGTCATGAAAATGTGGT 509
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 435 GGAAGATGTAAAGAGAGAGGTGAAGATACTACAAGCTTTGACTGGTCATGAAAATGTGGT 494
Query 510 TCGGTTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATGGAGTTATGCGA 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TCGGTTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATGGAGTTATGCGA 554
Query 570 GGGTGGTGAATTACTTGATCGTATTTTAGCCAGGAAGGATAGCCGTTATAGCGAGAGAGA 629
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 555 GGGTGGTGAATTACTTGATCGGATATTAGCCAGGAAAGATAGCCGTTATAGCGAGAGAGA 614
Query 630 CGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTT 689
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 615 CGCGGCCGTGGTAGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTGCGCGGTTT 674
Query 690 GGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAAGAAGATTCGCC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAAGAAGATTCGCC 734
Query 750 TCTAAAAGCTACTGATTTCGGTTTATCTGACTTCATAAAGCCAGGCAAAAAGTTTCATGA 809
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 735 TCTAAAAGCTACAGATTTCGGTTTATCAGACTTCATAAAGCCAGGCAAAAAGTTTCATGA 794
Query 810 TATTGTTGGGAGTGCATACTATGTAGCACCTGAAGTGTTAAAACGTAGGTCGGGACCTGA 869
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 795 CATTGTTGGCAGTGCATACTATGTAGCACCTGAAGTGTTGAAACGCAGGTCGGGACCCGA 854
Query 870 ATCAGATGTGTGGAGTATTGGTGTAATCAGTTACATTCTTCTCTGCGGGAGACGACCATT 929
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 855 ATCAGATGTGTGGAGTATCGGTGTAATCAGTTACATTCTTCTCTGCGGGAGACGACCATT 914
Query 930 CTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTTTTGAAGAACAAACCTGATTTCAG 989
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 915 CTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTCTTGAAGAACAAACCTGATTTCAG 974
Query 990 AAGAAAACCGTGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTCAAGAAGTTGTTAGT 1049
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 975 AAGAAAACCGTGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTTAAGAAGTTGTTAGT 1034
Query 1050 AAAAGACCCGAGAGCGCGATTAACAGCTGCACAAGCACTATCACATCCATGGGTTAGAGA 1109
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1035 AAAAGATCCGAGAGCGCGATTAACTGCTGCGCAAGCACTATCACATCCATGGGTTAGAGA 1094
Query 1110 AGGAGGAGATGCATCTGAGATTCCCATAGACATATCTGTTCTGAACAACATGCGTCAGTT 1169
|||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||
Sbjct 1095 AGGAGGAGATGCATCTGAGATTCCTATAGACATATCTGTCCTTAATAACATGCGTCAGTT 1154
Query 1170 TGTGAAATTTAGCCGCCTTAAGCAATTCGCTTTAAGGGCTCTTGCAACGACACTTGATGA 1229
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1155 TGTGAAATTTAGCCGCCTCAAGCAATTCGCTCTAAGGGCTCTTGCAACGACGCTTGATGA 1214
Query 1230 GGAAGAGTTGGCTGATCTTCGAGACCAGTTTGATGCGATTGATGTTGACAAGAATGGTGT 1289
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
Sbjct 1215 AGAAGAGTTGGCTGATCTTAGAGACCAGTTCGATGCGATTGATGTTGACAAGAATGGCGC 1274
Query 1290 CATTAGCCTTGAAGAGATGAGGCAGGCTCTAGCGAAAGATCATCCTTGGAAGCTTAAGGA 1349
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1275 CATTAGCCTTGAAGAGATGAGGCAGGCTCTGGCGAAAGATCATCCTTGGAAGCTTAAGGA 1334
Query 1350 TGCAAGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAGATGGATTCGTGGACTT 1409
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1335 TGCACGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAGATGGATTTGTGGACTT 1394
Query 1410 TGGCGAGTTTGTCGCCGCTGCGCTACACGTAAACCAATTAGAGGAACACGATTCCGAGAA 1469
|| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1395 CGGGGAGTTTGTAGCGGCTGCACTACACGTAAATCAATTAGAGGAACACGATTCCGAAAA 1454
Query 1470 GTGGCAACAGAGATCAAGAGCAGCATTTGAAAAATTCGACATAGATGGAGATGGATTTAT 1529
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 GTGGCAGCAGAGATCAAGAGCAGCATTTGAAAAATTCGACATAGATGGAGATGGATTTAT 1514
Query 1530 AACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCCATTGAGCCACTTCTTGA 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 AACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCCATTGAGCCACTTCTTGA 1574
Query 1590 AGAAGCAGACATTGACAATGATGGTAAAATCAGTCTCCAAGAGTTTCGTAGACTTTTGAG 1649
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 AGAAGCAGATATTGACAATGATGGTAAAATCAGTCTCCAAGAGTTTCGTAGACTTTTGAG 1634
Query 1650 AACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCTGGTTATCTTATTTCTCGCAA 1709
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1635 AACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCTGGTTACCTTATTTCTCGCAA 1694
Query 1710 GGTCTAA 1716
|||||||
Sbjct 1695 GGTCTAA 1701
> Ahg328146 jgi|Araly1|328146|fgenesh1_pm.C_scaffold_7000373
Length=1605
Score = 1397 bits (756), Expect = 0.0
Identities = 1220/1444 (84%), Gaps = 32/1444 (2%)
Strand=Plus/Plus
Query 267 GATCCCCTACGGTAAGCGTGTAGATTTTGGGTACGCTAAAGATTTTGATCACCGTTACAC 326
||| || ||||||||||| | |||||||| |||||||| ||||| ||| | || ||||
Sbjct 156 GATACCGTACGGTAAGCGCATCGATTTTGGTTACGCTAAGGATTTCGATAATCGATACAT 215
Query 327 CATTGGAAAATTGCTTGGACATGGTCAATTTGG-TTATACATATGTCGCTACCGATaa-a 384
||| || | |||||| ||||| || || ||||| || ||| |||||||| |||||||| |
Sbjct 216 CATCGGGAGATTGCTCGGACACGGCCAGTTTGGCTT-TACCTATGTCGCCACCGATAACA 274
Query 385 aaaaCCGGTGATCGTGTCGCCGTCAAGAAG-ATCGATAAGGCCAAGATGA--CAATTCCG 441
| || ||| |||| ||||| |||||| || ||||| ||||||||||||| ||| |||
Sbjct 275 ACAA-CGGCAATCGCGTCGCAGTCAAG-AGAATCGAGAAGGCCAAGATGACTCAA--CCG 330
Query 442 ATAGCTGTGGAAGATGTAAAGAGAGAGGTGAAGATATTACAAGCTTTAACTGGTCATGAA 501
|| | ||||||||||| ||| |||||||||||||| ||||||||||| ||| |||||
Sbjct 331 ATTGAAGTGGAAGATGTGAAGCGAGAGGTGAAGATACTACAAGCTTTAGGTGGGCATGAG 390
Query 502 AATGTGGTTCGG-TTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATGGA 560
||||||||| || ||| | ||||| || |||||||| |||| | |||| ||||| |||||
Sbjct 391 AATGTGGTT-GGCTTTCACAATGCATTTGAGGACAACAACTATATTTACATAGTCATGGA 449
Query 561 GTTATGCGAGGGTGGTGAATTACTTGATCGTATTTTAGCCAGGAAGGATAGCCGTTATAG 620
|||||| || ||||||||||| || ||||| || |||| | ||| ||||||||||| |
Sbjct 450 GTTATGTGAAGGTGGTGAATTGCTAGATCGAATACTAGCTAAGAAAGATAGCCGTTACAC 509
Query 621 CGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTT 680
||||| ||| || || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 510 CGAGAAAGATGCAGCGGTTGTGGTGAGACAAATGCTGAAAGTTGCAGCTGAGTGTCATTT 569
Query 681 ACGCGGTTTGGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAAGA 740
||| ||| | || ||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 570 ACGAGGTCTAGTGCACCGCGACATGAAGCCAGAGAATTTTCTGTTCAAATCAACCGAAGA 629
Query 741 AGATTCGCCTCTAAAAGCTACTGATTTCGGTTTATCTGACTTCATAAAGCCAGGCAA--A 798
|| |||| ||||||| ||||| ||||| ||||| || ||||||||||||||||| || |
Sbjct 630 AGGTTCGTCTCTAAAGGCTACAGATTTTGGTTTGTCAGACTTCATAAAGCCAGG-AATGA 688
Query 799 AAGTTTCATGATATTGTTGGGAGTGCATACTATGTAGCACCTGAAGTGTTAAAACGTAGG 858
|| ||||| ||||| || || || |||||||| || |||||||||||||| |||||||||
Sbjct 689 AA-TTTCAGGATATAGTAGGAAGCGCATACTACGTCGCACCTGAAGTGTTGAAACGTAGG 747
Query 859 TCGGGACCTGAATCAGATGTGTGGAGTATTGGTGTAATCAGTTACATTCTTCTCTGCGGG 918
|| |||||||||||||| || |||||||||||||| |||| |||||||||||||||||||
Sbjct 748 TCAGGACCTGAATCAGACGTTTGGAGTATTGGTGTCATCACTTACATTCTTCTCTGCGGG 807
Query 919 AGACGACCATTCTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTTTTGAAGAACAAA 978
||| |||| ||||||||||||||| ||||||| || ||||| ||||| ||| ||| |||
Sbjct 808 AGAAGACCCTTCTGGGATAAGACTCAAGACGGAATATTCAATGAGGTCATGA-GAAAAAA 866
Query 979 -CCTGATTTCAGAAGAAAACCG-TGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTCA 1036
|||||||||||| ||| || ||||||||||| |||||| | ||||||||||| || |
Sbjct 867 ACCTGATTTCAGA-GAAGTCCCATGGCCAACCATCAGCAACGGTGCCAAAGATTTCGTGA 925
Query 1037 AGAAGTTGTTAGTAAAAGACCCGAGAGCGCGATTAACAGCTGCACAAGCACTATCACATC 1096
||||||||||||| || || ||| | || || |||||||| || ||||| ||||||||||
Sbjct 926 AGAAGTTGTTAGTTAAGGAGCCGCGGGCACGGTTAACAGCAGCTCAAGCGCTATCACATC 985
Query 1097 CATGGGTTAGAGAAGGAGGAGATGCATCTGAGATTCCCATAGACATATCTGTTCTGAACA 1156
||||||| | ||||||||| || || || ||| |||| ||||||||||||||||| ||||
Sbjct 986 CATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAACA 1045
Query 1157 ACATGCGTCAGTTTGTGAAATTTAGCCGCCTTAAGCA-ATTCGCTTTAAGGGCTCTTGCA 1215
| ||||||||||||||||||||||||||||||||||| ||| ||| | |||||||| ||
Sbjct 1046 ATATGCGTCAGTTTGTGAAATTTAGCCGCCTTAAGCAGATT-GCTCTGAGGGCTCTGGCG 1104
Query 1216 ACGACACTTGATGAGGAAGAGTTGGCTGATCTTC-GAGACCAGTTTGATGCGATTGATGT 1274
|| ||| |||||||||| ||| ||| |||||| | |||||||||||||||||||||| |
Sbjct 1105 ACAACAATTGATGAGGATGAGCTGGATGATCT-CAGAGACCAGTTTGATGCGATTGACAT 1163
Query 1275 TGACAAGAATGGTGTC-ATTAGCCTTGAAGAGATGAGGCAGGCTCTAGCGAAAGATCATC 1333
||||||||| ||| || || |||||||||||||||||||||||||| ||||||||| ||
Sbjct 1164 TGACAAGAACGGT-TCGATAAGCCTTGAAGAGATGAGGCAGGCTCTTGCGAAAGATGTTC 1222
Query 1334 CTTGGAAGCTTAAGGATGCAAGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAG 1393
||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1223 CTTGGAAACTGAAGGATGCAAGAGTTGCAGAGATTCTTCAAGCGATTGATAGCAACACTG 1282
Query 1394 ATGGATTCGTGGACTTTGGC-GAGTTTGTCGCCGCTGCGCTACACGTAAACCAATTAGAG 1452
||||||| ||||| ||| | |||||||| | ||||| | ||||| |||||||| |||
Sbjct 1283 ATGGATTGGTGGA-TTTCACTGAGTTTGTGGTGGCTGCTTTGCACGTGAACCAATTGGAG 1341
Query 1453 GAACACGATTCCGAGAAGTGGCAACAGAGATCAAGAGCAGCATTTGAAAAATTCGACATA 1512
|| || || || ||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 1342 GAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAGCAGCATTTGACAAGTTTGACATA 1401
Query 1513 GATGGAGATGGATTTATAACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCC 1572
|| |||||||| |||||||| | ||||||||| || |||| || || |||||||| |||
Sbjct 1402 GACGGAGATGGGTTTATAACTCCCGAGGAACTTAGATTGCAAACGGGTTTGAAAGGCTCC 1461
Query 1573 ATTGAGCCACTTCTTGAAGAAGCAGACATTGACAATGATGGTAAAATCAGTC-TCCAA-G 1630
|| || || |||||||||||||| |||||||| || ||||| | |||||| | || || |
Sbjct 1462 ATCGAACCCCTTCTTGAAGAAGCCGACATTGATAAAGATGGGAGAATCAG-CATC-AATG 1519
Query 1631 AGTTTCGTAGACTTTTGAGAACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCTG 1690
||||||| ||||||||||||| |||||| |||| ||||||||||||| |||||||||||
Sbjct 1520 AGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAAGAAATGTTAAAAGCCCTCCTG 1579
Query 1691 GTTA 1694
||||
Sbjct 1580 GTTA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5