BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17900.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319740 jgi|Araly1|319740|fgenesh1_pm.C_scaffold_3002756 2414 0.0
> Ahg319740 jgi|Araly1|319740|fgenesh1_pm.C_scaffold_3002756
Length=1452
Score = 2414 bits (1307), Expect = 0.0
Identities = 1409/1458 (97%), Gaps = 8/1458 (1%)
Strand=Plus/Plus
Query 9 ATGGCGGATTTGCAGAGATTTCTGCAAGATCGCTGCTTAGGCGTTTCGAATCTCCCACAG 68
||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 1 ATGGCGGATTTGCAGAGATTTCTACAAGATCGCTGCTTAAGCGTTACGAATCTCCCACAC 60
Query 69 AAAGGCCGCTCTCTATTCACTGCCAGAGATTTTCGTCCAGGAGAAGTGATTCTAAGCCAA 128
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 61 AAAGGCCGCTCTCTATTCACTACCAGAGATATTCGTCCAGGAGAAGTGATTCTAAGCCAA 120
Query 129 AAGCCATATATATGTGTTCCGAATAATACATCCTCGGAATCAAGATGTGACGGATGTTTC 188
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 121 AAGCCATATATCTGTGTCCCGAATAATACATCATCGGAATCAAGGTGTGACGGATGTTTC 180
Query 189 AAGACCAATAACCTTAAGAAATGTTCTGCTTGTCAAGTGGTTTGGTACTGTGGGAGCTCT 248
|| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 181 AAAACCAATAACCTGAAGAGATGTTCTGGTTGTCAAGTGGTTTGGTACTGTGGGAGTTCT 240
Query 249 TGCCAGAAGTCAGAGTGGAAGTTACATCG-CGATGAATGCAAAGCTCTCACTAGACTTGA 307
||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||
Sbjct 241 TGCCAGAAGTCAGAGTGGAAGTTACATCGAC-ATGAATGCAAAGCTCTTACTAGGCTTGA 299
Query 308 GAAGGAGAAACGGAAGTTTGTTACTCCTACAATACGTCTGATGGTTAGACTTTACATCAA 367
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 GAAGGAGAAACGGAAGTTTGTTACTCCTACAATACGTCTGATGGTTAAACTTTACATCAA 359
Query 368 GAGGAATTTGCAAAATGAAAAGGTCCTGCCAATTACGACGACAGACAATTATAGTTTGGT 427
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 360 GAGGAATTTGCAAAATGAAAAGGTCCTGCCTATTACGACAACAGACAATTATAGTTTGGT 419
Query 428 GGAGGCTTTGGTGTCCCACATGTCTGAGATTGATGAAAAGCAGATGTTGTTGTATGCACA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAGGCTTTGGTGTCCCACATGTCTGAGATTGATGAAAAGCAGATGTTGTTGTATGCACA 479
Query 488 GATGGCTAATCTTGTGAACTTGATTCTTCAATTTCCTAGTGTTGACCTAAGAGAGATCGC 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATGGCTAATCTTGTGAACTTGATTCTTCAATTTCCTAGTGTTGACCTAAGAGAGATCGC 539
Query 548 CGAGAACTTTTCAAAGTTCTCATGCAATGCTCATAGCATTTGTGATAGCGAATTGAGACC 607
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGAGAACTTCTCAAAGTTCTCATGCAATGCTCATAGCATTTGTGATAGCGAATTGAGACC 599
Query 608 TCAAGGGATTGGATTGTTTCCATTGGTTTCCATCATTAATCACAGCTGCTCTCCCAATGC 667
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCAAGGGATAGGATTGTTTCCATTGGTTTCCATCATTAATCACAGCTGCTCTCCCAATGC 659
Query 668 GGTTTTAGTGTTTGAGGAGCAGATGGCTGTTGTTCGGGCGATGGATAACATATCAAAGGA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTTTTAGTGTTTGAGGAGCAGATGGCTGTTGTTCGGGCGATGGATAACATATCAAAGGA 719
Query 728 TTCAGAGATAACTATCAGTTATATTGAAACCGCTGGAAGCACTCTGACTCGGCAGAAGTC 787
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TTCAGAGATAACTATCAGCTATATTGAAACCGCTGGAAGTACTCTGACTCGGCAGAAGTC 779
Query 788 TCTGAAAGAACAATACCTCTTCCACTGTCAGTGTGCCCGTTGCAGTAACT-TTGGAAAAC 846
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 780 TCTGAAAGAACAATACCTCTTCCATTGTCAGTGTGCCCGTTGCAGTAA-TGTTGGAAAAC 838
Query 847 CTCATGATATTGAAGAAAGTGCAATATTGGAAGGCTATCGGTGTGCCAATGAGAAATGCA 906
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 CTCTTGATATTGAAGAAAGTGCAATATTGGAAGGCTATCGGTGTTCCAATGAGAAATGCA 898
Query 907 CCGGTTTCTTACTCCGTGATCCTGAAGAAAAAGGCTTCGTTTGCCAGAAATGCTTGCTTC 966
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 CTGGTTTCTTACTCCGTGATCCTGAAGAAAAAGGCTTTGTTTGCCAGAAATGCTTGCTTC 958
Query 967 TTAGGAGCAAGGAAGAGGTTAAAAAGTTAGCAAGTGATCTCAAAACAGTTTCAGAGAAGG 1026
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 TTAGGAGCAAGGAAGAGGTTAAAAAGTTAGCAAGTGATCTCAAGACAGTTTCAGAGAAGG 1018
Query 1027 CTCCTACATCTCCTTCCGCAGAAGATAAACAAGCCGCTATTGAACTATATAAGACAATTG 1086
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCCTGCATCTCCTTCCGCAGAAAATAAACAAGCCGCTATTGAACTATATAAGACAATTG 1078
Query 1087 AGAAACTACAAGTTAAGCTTTACCATTCTTTCTCCATCCCTTTAATGAGAACCCGTGAAA 1146
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 AGAAACTACAAGTTAAGCTTTACCATTCTTTCTCCATCACTTTAATGAGAACCCGTGAAA 1138
Query 1147 AACTTCTCAAGATGCTAATGGACGTAGAAATCTGGAGAGAAGCTTTGAATTACTGCAGAC 1206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 AACTTCTCAAGATGCTAATGGACTTAGAAATCTGGAGAGAAGCTTTGAATTACTGCAGAC 1198
Query 1207 TAATAGTCCCTGTTTACCAAAGAGTATATCCGGCAACCCATCCTTTGATTGGACTGCAGT 1266
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1199 TCATAGTCCCTGTTTACCAAAGAGTATATCCAGCAACCCATCCTTTGATTGGACTGCAGT 1258
Query 1267 TCTATACCCAAGGAAAACTCGAATGGTTGCTGGGGGAAACCAAAGAGGCGGTGAGTTCAT 1326
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 TCTATACCCAGGGAAAACTCGAATGGTTACTGGGGGAAACCAAAGAGGCGGTGAGTTCAC 1318
Query 1327 TGATTAAGGCATTTGACATTCTGCGGATCAGCCATGGAATAAGCACACCTTTCATGAAAG 1386
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1319 TGATTAAGGCATTTGACATTCTGCGGATCAGCCACGGAACAAGCACACCTTTCATGAAAG 1378
Query 1387 AGCTCTCAGCAAAGTTGGAGGAAGCTCGTGCAGAAGCTTCTTATAAGCAGCTTGCATTGC 1446
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1379 AGCTCTCAGCAAAGTTGGAGGAAGCTCGTGCAGAAGCTTCTTATAAGC---TTGC-TTGC 1434
Query 1447 ATTGAAAGACGCTTATAA 1464
||||||||||||||||||
Sbjct 1435 ATTGAAAGACGCTTATAA 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5