BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17940.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480692 jgi|Araly1|480692|fgenesh2_kg.3__3393__AT2G17940.1 946 0.0
> Ahg480692 jgi|Araly1|480692|fgenesh2_kg.3__3393__AT2G17940.1
Length=764
Score = 946 bits (512), Expect = 0.0
Identities = 688/767 (90%), Gaps = 35/767 (5%)
Strand=Plus/Plus
Query 50 AGTAATGGAGAGAGGAAACGTTTGGAGAAGTGGTCGAGCGGAGATAGAGACAAAAGCAGC 109
||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||
Sbjct 24 AGTAATGGAGAGAGGCAACGATTGGGGAAGTGGTCGGGCGGAGATAGAGACAAAAGCAGC 83
Query 110 GTTTGGGTCGGTGAAAGAAGCGGTGGCCATGTTCGGAGAGAAAGTTTTAGCCGGAGAGAT 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GTTTGGGTCGGTGAAAGAAGCGGTGGCCATGTTCGGAGAGAAAGTTTTAGCCGGAGAGAT 143
Query 170 CTATGCAACTAGGCTTAGAGAGATACGGACAAAGGAAACAAATTCAACTCCGAGTTC-TC 228
||||||||||||||||| |||||||||||||||||||||||||| ||||||| || | ||
Sbjct 144 CTATGCAACTAGGCTTAAAGAGATACGGACAAAGGAAACAAATTTAACTCCGCGT-CATC 202
Query 229 TATCAAGACTACCATCTCTAACACTCGAGCTTGAGCAGACAAAACAAACACTGACAAGAA 288
||||||||||| |||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct 203 AATCAAGACTACGATCTCTAACACTAGAGCTCAAGCAGACAAAACAAACTCTTACAAGAA 262
Query 289 CACTACAACTAAACACCAGCCTCTCCAACAGAATCAAAACTCTAACACAAGAACTCGAAC 348
|||||||||| ||||| | | | ||||||||| |||||||||||||||||||||||||||
Sbjct 263 CACTACAACTTAACACGATCATGTCCAACAGACTCAAAACTCTAACACAAGAACTCGAAC 322
Query 349 TTGGTAAGAAGGAGATACAACGGCTCAGCAGGACGAGGTCGAGTCGCCTAGACAATCCGG 408
||| | |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 323 ATGGGAGGAAGGAGATACAACGGCTCAACAGGACGAGGTCGAGTCGCCTAGATAATCCGG 382
Query 409 AGATTGAGGAACTCAAGTTCGTGGAACAGCATCAAACGATGACGTCTAATGATTTTGAAG 468
|||||||||||||||||||||| |||||||||||||||| || |||||| ||| ||||||
Sbjct 383 AGATTGAGGAACTCAAGTTCGTTGAACAGCATCAAACGACGATGTCTAAAGATGTTGAAG 442
Query 469 AAGAGGTTGTGACGACGGAGGAGTTGGAAAAGAGGAGACTAGTGACATTCGCGAGCTCGC 528
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 443 AAGAGATTGTGACGACGGAGGAGTTGGAGAAGAGGAGACTCGTGACATTCGCGAGCTCGC 502
Query 529 CTTTGCTGACACGTGTGATGTCAAGTGTCGGGGACGAAGAGGAGAGAAACAAGAAAGAGA 588
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 503 CTTTGCTGACACGTGTGATGTCAAGCGTCGGGGACGAAGAGGAGAGGAAGAAGAAAGAGA 562
Query 589 AGGATTTTGAGAGAGATTGTTCGGTCAAGAAGACAAAATTAAAGAAGGGTTTTGCTCCGT 648
| |||| | || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 563 ATGATT--G-------TT-T--GGTCAAGAAGACAAAATCAAAGAAGGGTTTTGCTCCGT 610
Query 649 TCATGGGATGGTTTAGAGCAACCCGTGGATGAGATTGATCTATATATCT------CCAAT 702
||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||
Sbjct 611 TCATGGGATGGTTTAGAGCAACCCGAGGAAGAGATTGATCTATATATATATATGTCCAAT 670
Query 703 AATGC--GGTCATATTGATTATTATGATTTTAGATCGTTATATAATATAGTTAATGTGCA 760
||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 671 AATGCTAGGTCATATTGATTGT-ATGATTTTATATCGTTATATAATATAGTTAATGTG-- 727
Query 761 TGATGCTATATATCAATCTCGTTCTAAGAGTTTGATGAATAATACTT 807
| || | | || | | |||||||||||||||||||| |||||||
Sbjct 728 T-AT-C-A-AT--C---C-CGTTCTAAGAGTTTGATGAACAATACTT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5