BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17950.1 Length=1232 Score E Sequences producing significant alignments: (Bits) Value Ahg931663 jgi|Araly1|931663|scaffold_304120.1 1495 0.0 Ahg932737 jgi|Araly1|932737|scaffold_400725.1 326 3e-88 Ahg931164 jgi|Araly1|931164|scaffold_303621.1 320 1e-86 Ahg936902 jgi|Araly1|936902|scaffold_501093.1 270 1e-71 Ahg925718 jgi|Araly1|925718|scaffold_201279.1 270 1e-71 Ahg906219 jgi|Araly1|906219|Al_scaffold_0003_3347 270 1e-71 Ahg923187 jgi|Araly1|923187|scaffold_104468.1 143 3e-33 > Ahg931663 jgi|Araly1|931663|scaffold_304120.1 Length=932 Score = 1495 bits (809), Expect = 0.0 Identities = 892/930 (96%), Gaps = 14/930 (2%) Strand=Plus/Plus Query 105 AAAAGTCGAATCAAACACACATGGAGCCGCCACAGCATCAGCATCATCATCATCAAGCCG 164 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2 AAAAGTCGAATCAAACACACATGGAGCCACCACAGCATCAGCATCATCATCATCAAGCCG 61 Query 165 ACCAAGAAAGCGGcaacaacaacaacaacaaGTCCGGCTCTGGTGGTTACACGTGTCGCC 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 ACCAAGAAAGCGGCAACAACAACAACAACAAGTCCGGCTCTGGTGGTTACACGTGTCGCC 121 Query 225 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAAAATCCTCAAAGAACTTTACT 284 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 122 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAGAATCCTCAAAGAACTTTACT 181 Query 285 ACAACAATGCAATCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 344 |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 ACAACAGTGGAGTCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 241 Query 345 GACAGTTCGGAAAGATTGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 404 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 GACAGTACGGAAAGATCGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 301 Query 405 GTGAGCGTCAGAAGAAGAGATTCAACGGAACAAACATGACCACACCATCTTCATCACCCA 464 |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| Sbjct 302 GTGAGCGTCAGAAGAAGAGATTCAACGGCACAACCATGACCACACCATCTTCATCGCCCA 361 Query 465 ACTCGGTTATGATGGCGGCTAACGATC---AT--T----ATCATCCTCTACTTCACCATC 515 |||||||||||||||||||||| |||| || | ||||||||||||||||||||| Sbjct 362 ACTCGGTTATGATGGCGGCTAATGATCATTATCATCAACATCATCCTCTACTTCACCATC 421 Query 516 ATCACGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAACCAAGACC 575 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 422 ATCATGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAATCAAGACC 481 Query 576 ATCATCTCTATCATCATAACAAGCCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 635 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 482 ATCATCTCTACCATCATAACAAGTCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 541 Query 636 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTAC---ATGAGTAGCC 692 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 542 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGATGAGTAGCC 601 Query 693 ATGTCTATGGATCTATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 752 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 602 ATGTCTATGGATCTATGGAACAAGATTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 661 Query 753 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAA-G 811 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 662 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGA-CAAAAG 720 Query 812 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTG 871 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 721 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCATATCTG 780 Query 872 GAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 931 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 781 GAACATCGACGTACGCTTCCGCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 840 Query 932 AGTGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGCCCTTGCGCTTCTCTTGAGCTA 991 | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 841 AATGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGTCCTTGTACTTCTCTTGAGCTA 900 Query 992 CGTCTGAACTAGCTCTTACGCCGGTGTCGC 1021 ||||||||||||||| |||||||| ||||| Sbjct 901 CGTCTGAACTAGCTCGTACGCCGGCGTCGC 930 > Ahg932737 jgi|Araly1|932737|scaffold_400725.1 Length=763 Score = 326 bits (176), Expect = 3e-88 Identities = 278/323 (86%), Gaps = 23/323 (7%) Strand=Plus/Plus Query 646 TACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATC 705 |||||||||||||| ||||||||||||||||||| ||| | || || | || | || Sbjct 377 TACTGAATGTGGTGCTGTTAATGCTTCTAATGGCCCCATTAATA--CA---C-AT-G-TC 428 Query 706 TATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGG- 764 ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 429 TAT-------GACTGTTCTATAAATTACAACAACGTAGGTGGAGGATGGGCAAACTTGGA 481 Query 765 -----ATCATCATTACTCATCTGCACCTTACAACTTCTTCG-ATAGAGCAAAGCCTCTGT 818 ||||||| ||||||| ||| |||| ||||||||| | ||||| |||||||| ||| Sbjct 482 TTATAATCATCACTACTCATTTGCGCCTTGCAACTTCTT-GCATAGACCAAAGCCTATGT 540 Query 819 TTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATC 878 ||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 541 TTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATC 600 Query 879 GACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTG 938 |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||| Sbjct 601 GACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTCAACGGTGATAGCGGTG 660 Query 939 CCATCTGGAAGTATGGCCAATCG 961 | ||||||||||||||||||||| Sbjct 661 CTATCTGGAAGTATGGCCAATCG 683 > Ahg931164 jgi|Araly1|931164|scaffold_303621.1 Length=742 Score = 320 bits (173), Expect = 1e-86 Identities = 277/323 (86%), Gaps = 23/323 (7%) Strand=Plus/Plus Query 646 TACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATC 705 |||||||||||||| ||||||||||||||||||| ||| | || || | || | || Sbjct 356 TACTGAATGTGGTGCTGTTAATGCTTCTAATGGCCCCATTAATA--CA---C-AT-G-TC 407 Query 706 TATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGG- 764 ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 408 TAT-------GACTGTTCTATAAATTACAACAACGTAGGTGGAGGATGGGCAAACTTGGA 460 Query 765 -----ATCATCATTACTCATCTGCACCTTACAACTTCTTCG-ATAGAGCAAAGCCTCTGT 818 ||||||| ||||||| ||| |||| ||||||||| | ||||| |||||||| ||| Sbjct 461 TTATAATCATCACTACTCATTTGCGCCTTGCAACTTCTT-GCATAGACCAAAGCCTATGT 519 Query 819 TTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATC 878 ||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 520 TTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATC 579 Query 879 GACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTG 938 |||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| |||| Sbjct 580 GACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGACCACCTCAACGGTGATAGCGGTG 639 Query 939 CCATCTGGAAGTATGGCCAATCG 961 | ||||||||||||||||||||| Sbjct 640 CTATCTGGAAGTATGGCCAATCG 662 > Ahg936902 jgi|Araly1|936902|scaffold_501093.1 Length=652 Score = 270 bits (146), Expect = 1e-71 Identities = 201/226 (89%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 744 GTGGAGGATGGGC-AAACATGG------ATCATCATTACTCATCTGCACCTTACAACTTC 796 ||||||||||||| |||| ||| ||||||| ||||||| ||| |||| ||||||| Sbjct 348 GTGGAGGATGGGCAAAACTTGGATTATAATCATCACTACTCATTTGCGCCTTGCAACTTC 407 Query 797 TTCG-ATAGAGCAAAGCCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGG 855 || | ||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 408 TT-GCATAGACCAAAGCCTATGTTTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGG 466 Query 856 TGGCGATGCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGA 915 || | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 467 TGTCAATGCTTATCTGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGA 526 Query 916 TCACATCAACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961 |||| ||||||||| ||| ||||| ||||||||||||||||||||| Sbjct 527 TCACCTCAACGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 572 > Ahg925718 jgi|Araly1|925718|scaffold_201279.1 Length=652 Score = 270 bits (146), Expect = 1e-71 Identities = 201/226 (89%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 744 GTGGAGGATGGGC-AAACATGG------ATCATCATTACTCATCTGCACCTTACAACTTC 796 ||||||||||||| |||| ||| ||||||| ||||||| ||| |||| ||||||| Sbjct 348 GTGGAGGATGGGCAAAACTTGGATTATAATCATCACTACTCATTTGCGCCTTGCAACTTC 407 Query 797 TTCG-ATAGAGCAAAGCCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGG 855 || | ||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 408 TT-GCATAGACCAAAGCCTATGTTTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGG 466 Query 856 TGGCGATGCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGA 915 || | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 467 TGTCAATGCTTATCTGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGA 526 Query 916 TCACATCAACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961 |||| ||||||||| ||| ||||| ||||||||||||||||||||| Sbjct 527 TCACCTCAACGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 572 > Ahg906219 jgi|Araly1|906219|Al_scaffold_0003_3347 Length=651 Score = 270 bits (146), Expect = 1e-71 Identities = 180/197 (91%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 765 ATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAAGCCTCTGTTTGGTC 824 ||||||| ||||||| | | |||| |||||||||| ||||| |||||||| | ||||||| Sbjct 11 ATCATCACTACTCATTTTCGCCTTGCAACTTCTTCCATAGACCAAAGCCTATCTTTGGTC 70 Query 825 TAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATCGACGTA 884 ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||| Sbjct 71 TAGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATCGATGTA 130 Query 885 CGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTGCCATCT 944 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 131 AGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTCAACGGTGGTAGTGGTGATATCT 190 Query 945 GGAAGTATGGCCAATCG 961 ||||||||||||||||| Sbjct 191 GGAAGTATGGCCAATCG 207 > Ahg923187 jgi|Araly1|923187|scaffold_104468.1 Length=628 Score = 143 bits (77), Expect = 3e-33 Identities = 92/99 (93%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 863 GCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATC 922 |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 451 GCTTAT-TGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTC 509 Query 923 AACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961 || |||| ||| ||||| ||||||||||||||||||||| Sbjct 510 AATGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46014360819 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5