BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17950.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931663 jgi|Araly1|931663|scaffold_304120.1 1495 0.0
Ahg932737 jgi|Araly1|932737|scaffold_400725.1 326 3e-88
Ahg931164 jgi|Araly1|931164|scaffold_303621.1 320 1e-86
Ahg936902 jgi|Araly1|936902|scaffold_501093.1 270 1e-71
Ahg925718 jgi|Araly1|925718|scaffold_201279.1 270 1e-71
Ahg906219 jgi|Araly1|906219|Al_scaffold_0003_3347 270 1e-71
Ahg923187 jgi|Araly1|923187|scaffold_104468.1 143 3e-33
> Ahg931663 jgi|Araly1|931663|scaffold_304120.1
Length=932
Score = 1495 bits (809), Expect = 0.0
Identities = 892/930 (96%), Gaps = 14/930 (2%)
Strand=Plus/Plus
Query 105 AAAAGTCGAATCAAACACACATGGAGCCGCCACAGCATCAGCATCATCATCATCAAGCCG 164
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2 AAAAGTCGAATCAAACACACATGGAGCCACCACAGCATCAGCATCATCATCATCAAGCCG 61
Query 165 ACCAAGAAAGCGGcaacaacaacaacaacaaGTCCGGCTCTGGTGGTTACACGTGTCGCC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 ACCAAGAAAGCGGCAACAACAACAACAACAAGTCCGGCTCTGGTGGTTACACGTGTCGCC 121
Query 225 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAAAATCCTCAAAGAACTTTACT 284
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 122 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAGAATCCTCAAAGAACTTTACT 181
Query 285 ACAACAATGCAATCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 344
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ACAACAGTGGAGTCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 241
Query 345 GACAGTTCGGAAAGATTGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 404
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GACAGTACGGAAAGATCGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 301
Query 405 GTGAGCGTCAGAAGAAGAGATTCAACGGAACAAACATGACCACACCATCTTCATCACCCA 464
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct 302 GTGAGCGTCAGAAGAAGAGATTCAACGGCACAACCATGACCACACCATCTTCATCGCCCA 361
Query 465 ACTCGGTTATGATGGCGGCTAACGATC---AT--T----ATCATCCTCTACTTCACCATC 515
|||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 362 ACTCGGTTATGATGGCGGCTAATGATCATTATCATCAACATCATCCTCTACTTCACCATC 421
Query 516 ATCACGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAACCAAGACC 575
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 422 ATCATGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAATCAAGACC 481
Query 576 ATCATCTCTATCATCATAACAAGCCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 635
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 482 ATCATCTCTACCATCATAACAAGTCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 541
Query 636 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTAC---ATGAGTAGCC 692
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 542 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGATGAGTAGCC 601
Query 693 ATGTCTATGGATCTATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 752
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 602 ATGTCTATGGATCTATGGAACAAGATTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 661
Query 753 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAA-G 811
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 662 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGA-CAAAAG 720
Query 812 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTG 871
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCATATCTG 780
Query 872 GAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 931
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAACATCGACGTACGCTTCCGCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 840
Query 932 AGTGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGCCCTTGCGCTTCTCTTGAGCTA 991
| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 841 AATGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGTCCTTGTACTTCTCTTGAGCTA 900
Query 992 CGTCTGAACTAGCTCTTACGCCGGTGTCGC 1021
||||||||||||||| |||||||| |||||
Sbjct 901 CGTCTGAACTAGCTCGTACGCCGGCGTCGC 930
> Ahg932737 jgi|Araly1|932737|scaffold_400725.1
Length=763
Score = 326 bits (176), Expect = 3e-88
Identities = 278/323 (86%), Gaps = 23/323 (7%)
Strand=Plus/Plus
Query 646 TACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATC 705
|||||||||||||| ||||||||||||||||||| ||| | || || | || | ||
Sbjct 377 TACTGAATGTGGTGCTGTTAATGCTTCTAATGGCCCCATTAATA--CA---C-AT-G-TC 428
Query 706 TATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGG- 764
||| ||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 429 TAT-------GACTGTTCTATAAATTACAACAACGTAGGTGGAGGATGGGCAAACTTGGA 481
Query 765 -----ATCATCATTACTCATCTGCACCTTACAACTTCTTCG-ATAGAGCAAAGCCTCTGT 818
||||||| ||||||| ||| |||| ||||||||| | ||||| |||||||| |||
Sbjct 482 TTATAATCATCACTACTCATTTGCGCCTTGCAACTTCTT-GCATAGACCAAAGCCTATGT 540
Query 819 TTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATC 878
||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 541 TTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATC 600
Query 879 GACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTG 938
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 601 GACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTCAACGGTGATAGCGGTG 660
Query 939 CCATCTGGAAGTATGGCCAATCG 961
| |||||||||||||||||||||
Sbjct 661 CTATCTGGAAGTATGGCCAATCG 683
> Ahg931164 jgi|Araly1|931164|scaffold_303621.1
Length=742
Score = 320 bits (173), Expect = 1e-86
Identities = 277/323 (86%), Gaps = 23/323 (7%)
Strand=Plus/Plus
Query 646 TACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATC 705
|||||||||||||| ||||||||||||||||||| ||| | || || | || | ||
Sbjct 356 TACTGAATGTGGTGCTGTTAATGCTTCTAATGGCCCCATTAATA--CA---C-AT-G-TC 407
Query 706 TATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGG- 764
||| ||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 408 TAT-------GACTGTTCTATAAATTACAACAACGTAGGTGGAGGATGGGCAAACTTGGA 460
Query 765 -----ATCATCATTACTCATCTGCACCTTACAACTTCTTCG-ATAGAGCAAAGCCTCTGT 818
||||||| ||||||| ||| |||| ||||||||| | ||||| |||||||| |||
Sbjct 461 TTATAATCATCACTACTCATTTGCGCCTTGCAACTTCTT-GCATAGACCAAAGCCTATGT 519
Query 819 TTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATC 878
||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 520 TTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATC 579
Query 879 GACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTG 938
|||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||
Sbjct 580 GACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGACCACCTCAACGGTGATAGCGGTG 639
Query 939 CCATCTGGAAGTATGGCCAATCG 961
| |||||||||||||||||||||
Sbjct 640 CTATCTGGAAGTATGGCCAATCG 662
> Ahg936902 jgi|Araly1|936902|scaffold_501093.1
Length=652
Score = 270 bits (146), Expect = 1e-71
Identities = 201/226 (89%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 744 GTGGAGGATGGGC-AAACATGG------ATCATCATTACTCATCTGCACCTTACAACTTC 796
||||||||||||| |||| ||| ||||||| ||||||| ||| |||| |||||||
Sbjct 348 GTGGAGGATGGGCAAAACTTGGATTATAATCATCACTACTCATTTGCGCCTTGCAACTTC 407
Query 797 TTCG-ATAGAGCAAAGCCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGG 855
|| | ||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct 408 TT-GCATAGACCAAAGCCTATGTTTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGG 466
Query 856 TGGCGATGCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGA 915
|| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 467 TGTCAATGCTTATCTGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGA 526
Query 916 TCACATCAACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961
|||| ||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 527 TCACCTCAACGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 572
> Ahg925718 jgi|Araly1|925718|scaffold_201279.1
Length=652
Score = 270 bits (146), Expect = 1e-71
Identities = 201/226 (89%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 744 GTGGAGGATGGGC-AAACATGG------ATCATCATTACTCATCTGCACCTTACAACTTC 796
||||||||||||| |||| ||| ||||||| ||||||| ||| |||| |||||||
Sbjct 348 GTGGAGGATGGGCAAAACTTGGATTATAATCATCACTACTCATTTGCGCCTTGCAACTTC 407
Query 797 TTCG-ATAGAGCAAAGCCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGG 855
|| | ||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct 408 TT-GCATAGACCAAAGCCTATGTTTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGG 466
Query 856 TGGCGATGCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGA 915
|| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 467 TGTCAATGCTTATCTGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGA 526
Query 916 TCACATCAACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961
|||| ||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 527 TCACCTCAACGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 572
> Ahg906219 jgi|Araly1|906219|Al_scaffold_0003_3347
Length=651
Score = 270 bits (146), Expect = 1e-71
Identities = 180/197 (91%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 765 ATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAAGCCTCTGTTTGGTC 824
||||||| ||||||| | | |||| |||||||||| ||||| |||||||| | |||||||
Sbjct 11 ATCATCACTACTCATTTTCGCCTTGCAACTTCTTCCATAGACCAAAGCCTATCTTTGGTC 70
Query 825 TAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATCGACGTA 884
||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 71 TAGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATCGATGTA 130
Query 885 CGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTGCCATCT 944
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 131 AGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTCAACGGTGGTAGTGGTGATATCT 190
Query 945 GGAAGTATGGCCAATCG 961
|||||||||||||||||
Sbjct 191 GGAAGTATGGCCAATCG 207
> Ahg923187 jgi|Araly1|923187|scaffold_104468.1
Length=628
Score = 143 bits (77), Expect = 3e-33
Identities = 92/99 (93%), Gaps = 1/99 (1%)
Strand=Plus/Plus
Query 863 GCTTATCTGGAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATC 922
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 451 GCTTAT-TGGAACATCGACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTC 509
Query 923 AACGGTGGTAGTGGTGCCATCTGGAAGTATGGCCAATCG 961
|| |||| ||| ||||| |||||||||||||||||||||
Sbjct 510 AATGGTGATAGCGGTGCTATCTGGAAGTATGGCCAATCG 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5