BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G17972.1

Length=746
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931665 jgi|Araly1|931665|scaffold_304122.1                        778    0.0  


> Ahg931665 jgi|Araly1|931665|scaffold_304122.1
Length=521

 Score =  778 bits (421),  Expect = 0.0
 Identities = 492/525 (94%), Gaps = 9/525 (2%)
 Strand=Plus/Plus

Query  18   AATCTTAAAAACAACAACAAAAATGAAAAGTCTCCACTTTTTAGCTCCCAATTCAACGAT  77
            ||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||
Sbjct  1    AATCTTAAAAACAAC-AC-AAAATGAAAACTCTTCACTTTTTAGCTCCCAATTCAACCAT  58

Query  78   TATCAATCTGAAG---CAACAATCTTATACAAAAACCAAGTTCCAGTTGCATCGTAGCAA  134
            |||||||||||||   ||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct  59   TATCAATCTGAAGCACCAACAATCTTACACACAAACCAAGTTCCAGTTGCATCGTAACAA  118

Query  135  CAGAAGAACTCTATCGATAAACTGCGTAAACAGTGGCGGTGATGAAGAGAAGAT-TACTC  193
            ||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| | |||
Sbjct  119  CAGAAGAACACTATCGATAAACTGTGTAAACAGTGGAGGAGATGATGAGAAGATCT-CTC  177

Query  194  AGCCGTTGGATGGAGTGGAGATAAGATTCAAAAGAGGATCCagaaggaaaatgagggaag  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  AGCCGTTGGATGGAGTGGAGATAAGATTCAAAAGAGGATCCAGAAGGAAAATGAGGGAAG  237

Query  254  agggttcaggagaaggaggaggacaaagcgggaagaaa-aaagagaCTGTTCAAAAGCCA  312
            ||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||
Sbjct  238  AGGGTTCAGGAGAAGGAGGAGGACAAAACGGGAA-AAAGAAAGAGACTGTACAAAAGCCA  296

Query  313  TGGGAAGAGATGACATTGAATGAGAAGGCATTGGAGCTTTATGTTGGAGAGAAAGGTTTG  372
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGGAAGAGATGACGTTGAATGAGAAGGCATTGGAGCTTTATGTTGGAGAGAAAGGTTTG  356

Query  373  TTGTTTTGGCTAAACAAATTGGCTTACGCGTCGATATACATTGTCATTGGAGGTTGGAtt  432
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  357  TTGTTTTGGCTGAACAAATTGGCTTACGCGTCGATTTACATTGTCATTGGAGGTTGGATT  416

Query  433  tttttCCGGTTTGTTGGACCGGCGTTTAATCTTTATCAACTCGATACACCGCCTCTTGAT  492
             ||||||||||||||||||||||||| ||||||||||| || ||||| || |||||||||
Sbjct  417  CTTTTCCGGTTTGTTGGACCGGCGTTCAATCTTTATCAGCTTGATACGCCACCTCTTGAT  476

Query  493  CCTAAGAACATCTTAAAGGGTTAAGAAATGCTTTGTAGCTGTGTC  537
            |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  477  CCTAAGAACATCTTAAAGGGTTAAGAAAAGCTTTTTAGCTGTGTC  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27486623157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5