BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17975.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480697 jgi|Araly1|480697|fgenesh2_kg.3__3398__AT2G17975.1 1267 0.0
Ahg931665 jgi|Araly1|931665|scaffold_304122.1 78.7 8e-14
> Ahg480697 jgi|Araly1|480697|fgenesh2_kg.3__3398__AT2G17975.1
Length=863
Score = 1267 bits (686), Expect = 0.0
Identities = 805/863 (93%), Gaps = 6/863 (1%)
Strand=Plus/Plus
Query 1 GTCGCCGGAGACTGGAGTTTTTCCGGGAAGAAGAAATGGGAGACGGAAGAGAAGGAGACT 60
|||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1 GTCGCCGGCGACTGGAGTTTTTCCGGGAAGAGGAAATGGGAGACGGGAGAGAAGGAGATT 60
Query 61 GGGAATGTTTAGGATGCAGAAACAGGAATTATGCGTTTAGATCATTCTGTAACAGATGCA 120
||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||
Sbjct 61 GGGAATGTTTAGGTTGTAGAAACAGGAATTATGCGTTTAGATCATTCTGCAATAGATGCA 120
Query 121 AGCAGCCTCGTCTTATCATGGATAATAATACTTCTCCAAACTCTAAGTGGCTTCCTCGTA 180
|||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 121 AGCAGCCTCGTCTTTTCATGGATAACAATACTTCTTCAAACTCCAAGTGGCTTCCTCGTA 180
Query 181 TCGGCGATTGGATCTGCACTGGTTGTACTAACAACAATTATGCATCACGAGAAAAGTGCA 240
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TCGGAGATTGGATCTGCACTGGTTGCACTAACAACAATTATGCATCACGAGAAAAGTGCA 240
Query 241 AGAAATGTGGGCAATCTAAGGAAGTAGCAGCATTGTCAGCACTTGCTATCCCTGGAGCTT 300
| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 AAAAATGCGGGCAACCTAAGGAAGTAGCAGCATTGTCAGCACTTGCAATCCCTGGAGCTT 300
Query 301 CTCTTCAAACTCATCTCCATTACTTCACCCGTGGACCTGAGTCACAT-GATCAACCTGGT 359
||||||| |||||||||||||||||| | ||||| ||||||||| || |||||| |||||
Sbjct 301 CTCTTCAGACTCATCTCCATTACTTCGCTCGTGGGCCTGAGTCA-ATCGATCAATCTGGT 359
Query 360 TCTTTACTCGCATTCTCTAACGCTACAAATCAAGCTTCGGTTCATAAAGAATGGAGGAGT 419
|| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 360 TCCTTACTTGCATTCTCTAACGCTGCAAATCAAGCTTCGGTTCTTAAAGAATGGAGGAGC 419
Query 420 GGTGACTGGATTTGCAGATGTGGTTTTCACAATTATTCCTCTCGTATACAGTGCAAAAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGACTGGATTTGCAGATGTGGTTTTCACAATTATTCCTCTCGTATACAGTGCAAAAAG 479
Query 480 TGCAATGAAATAGCTCCACTAGCCCTTGGTACAAAGAGATTAGCATCAGAAGCTTTGGCT 539
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 480 TGCAATGAAACAGCTCCACTAGCCCCTGGAACAAAGAGATTAGCATCAGAAGCTTTGGCT 539
Query 540 CATGAATGGGATAGCAAAAGACTGAATCAAGGATATACAAGCATGCAAACACAGTCAGCG 599
|||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||
Sbjct 540 CATGAATGGGATAGCAAAAGACTGAATCAAGGATTTACAAGCATGCAACCAAATTCAGCG 599
Query 600 ATATATGCA-TCTTTTCCTGGTATGAGCCTAGGAAGGGTCTCAAATTGGCAACTTCCTCT 658
||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 600 ATATATG-AGTCTTTTCCTGGTATGAGCCCAGGAAGGATCTCAAATTGGCAACTTCCTCT 658
Query 659 CCCGTTTCTACAACAACACTCAACACCTGCTTTACTTGGAATGGGAGTGAAACAATGGCG 718
|||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 659 CCCGTTTCTACAGCAACATTCAACACCTGCTTTACTTGGAAAAGGAGCAAAACAATGGCA 718
Query 719 TGATGGCGACTGGATGTGTACAAATTGCAAGAATCACAATTATGCATCACGAGCAGAGTG 778
||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 719 CGATGGAGACTGGATGTGCACAAATTGCAAGAATCACAATTATGCATCTCGATCAGAGTG 778
Query 779 CAATAGGTGCAAGACTACACGAGATATCCTTGATCAGGACATAACTCCAACAGAACAATC 838
||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 779 CAATAGGTGCAAGACTACACGAGATATTCTTAATCAGGACATAACTCCAACACAACAATC 838
Query 839 TTGAA-AATTCATGAAGAGTGTT 860
||||| ||| |||||||||||||
Sbjct 839 TTGAAGAAT-CATGAAGAGTGTT 860
> Ahg931665 jgi|Araly1|931665|scaffold_304122.1
Length=521
Score = 78.7 bits (42), Expect = 8e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 959 GACACAGCTACAAAGCATTTCTTAACCCTTTAAGATGTTCTTAGGATC 1006
|||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 521 GACACAGCTAAAAAGCTTTTCTTAACCCTTTAAGATGTTCTTAGGATC 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5