BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17975.1 Length=1006 Score E Sequences producing significant alignments: (Bits) Value Ahg480697 jgi|Araly1|480697|fgenesh2_kg.3__3398__AT2G17975.1 1267 0.0 Ahg931665 jgi|Araly1|931665|scaffold_304122.1 78.7 8e-14 > Ahg480697 jgi|Araly1|480697|fgenesh2_kg.3__3398__AT2G17975.1 Length=863 Score = 1267 bits (686), Expect = 0.0 Identities = 805/863 (93%), Gaps = 6/863 (1%) Strand=Plus/Plus Query 1 GTCGCCGGAGACTGGAGTTTTTCCGGGAAGAAGAAATGGGAGACGGAAGAGAAGGAGACT 60 |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 1 GTCGCCGGCGACTGGAGTTTTTCCGGGAAGAGGAAATGGGAGACGGGAGAGAAGGAGATT 60 Query 61 GGGAATGTTTAGGATGCAGAAACAGGAATTATGCGTTTAGATCATTCTGTAACAGATGCA 120 ||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||| Sbjct 61 GGGAATGTTTAGGTTGTAGAAACAGGAATTATGCGTTTAGATCATTCTGCAATAGATGCA 120 Query 121 AGCAGCCTCGTCTTATCATGGATAATAATACTTCTCCAAACTCTAAGTGGCTTCCTCGTA 180 |||||||||||||| |||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct 121 AGCAGCCTCGTCTTTTCATGGATAACAATACTTCTTCAAACTCCAAGTGGCTTCCTCGTA 180 Query 181 TCGGCGATTGGATCTGCACTGGTTGTACTAACAACAATTATGCATCACGAGAAAAGTGCA 240 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 181 TCGGAGATTGGATCTGCACTGGTTGCACTAACAACAATTATGCATCACGAGAAAAGTGCA 240 Query 241 AGAAATGTGGGCAATCTAAGGAAGTAGCAGCATTGTCAGCACTTGCTATCCCTGGAGCTT 300 | ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 AAAAATGCGGGCAACCTAAGGAAGTAGCAGCATTGTCAGCACTTGCAATCCCTGGAGCTT 300 Query 301 CTCTTCAAACTCATCTCCATTACTTCACCCGTGGACCTGAGTCACAT-GATCAACCTGGT 359 ||||||| |||||||||||||||||| | ||||| ||||||||| || |||||| ||||| Sbjct 301 CTCTTCAGACTCATCTCCATTACTTCGCTCGTGGGCCTGAGTCA-ATCGATCAATCTGGT 359 Query 360 TCTTTACTCGCATTCTCTAACGCTACAAATCAAGCTTCGGTTCATAAAGAATGGAGGAGT 419 || ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 360 TCCTTACTTGCATTCTCTAACGCTGCAAATCAAGCTTCGGTTCTTAAAGAATGGAGGAGC 419 Query 420 GGTGACTGGATTTGCAGATGTGGTTTTCACAATTATTCCTCTCGTATACAGTGCAAAAAG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGTGACTGGATTTGCAGATGTGGTTTTCACAATTATTCCTCTCGTATACAGTGCAAAAAG 479 Query 480 TGCAATGAAATAGCTCCACTAGCCCTTGGTACAAAGAGATTAGCATCAGAAGCTTTGGCT 539 |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 480 TGCAATGAAACAGCTCCACTAGCCCCTGGAACAAAGAGATTAGCATCAGAAGCTTTGGCT 539 Query 540 CATGAATGGGATAGCAAAAGACTGAATCAAGGATATACAAGCATGCAAACACAGTCAGCG 599 |||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||| Sbjct 540 CATGAATGGGATAGCAAAAGACTGAATCAAGGATTTACAAGCATGCAACCAAATTCAGCG 599 Query 600 ATATATGCA-TCTTTTCCTGGTATGAGCCTAGGAAGGGTCTCAAATTGGCAACTTCCTCT 658 ||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 600 ATATATG-AGTCTTTTCCTGGTATGAGCCCAGGAAGGATCTCAAATTGGCAACTTCCTCT 658 Query 659 CCCGTTTCTACAACAACACTCAACACCTGCTTTACTTGGAATGGGAGTGAAACAATGGCG 718 |||||||||||| ||||| |||||||||||||||||||||| |||| |||||||||| Sbjct 659 CCCGTTTCTACAGCAACATTCAACACCTGCTTTACTTGGAAAAGGAGCAAAACAATGGCA 718 Query 719 TGATGGCGACTGGATGTGTACAAATTGCAAGAATCACAATTATGCATCACGAGCAGAGTG 778 ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| Sbjct 719 CGATGGAGACTGGATGTGCACAAATTGCAAGAATCACAATTATGCATCTCGATCAGAGTG 778 Query 779 CAATAGGTGCAAGACTACACGAGATATCCTTGATCAGGACATAACTCCAACAGAACAATC 838 ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| Sbjct 779 CAATAGGTGCAAGACTACACGAGATATTCTTAATCAGGACATAACTCCAACACAACAATC 838 Query 839 TTGAA-AATTCATGAAGAGTGTT 860 ||||| ||| ||||||||||||| Sbjct 839 TTGAAGAAT-CATGAAGAGTGTT 860 > Ahg931665 jgi|Araly1|931665|scaffold_304122.1 Length=521 Score = 78.7 bits (42), Expect = 8e-14 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 959 GACACAGCTACAAAGCATTTCTTAACCCTTTAAGATGTTCTTAGGATC 1006 |||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 521 GACACAGCTAAAAAGCTTTTCTTAACCCTTTAAGATGTTCTTAGGATC 474 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37398581577 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5