BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G17980.1 Length=2263 Score E Sequences producing significant alignments: (Bits) Value Ahg489836 jgi|Araly1|489836|fgenesh2_kg.6__2970__AT2G17980.1 2822 0.0 Ahg480698 jgi|Araly1|480698|fgenesh2_kg.3__3399__AT2G17980.1 2198 0.0 Ahg944805 jgi|Araly1|944805|scaffold_701034.1 1249 0.0 > Ahg489836 jgi|Araly1|489836|fgenesh2_kg.6__2970__AT2G17980.1 Length=2062 Score = 2822 bits (1528), Expect = 0.0 Identities = 1886/2059 (92%), Gaps = 24/2059 (1%) Strand=Plus/Plus Query 66 TAGATCTCTTTGTTTCTACTGCTTTTCATCGTTGGATCTGCGTTTTGCAAAGGGAGATAC 125 ||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||| Sbjct 18 TAGATCTCTTTGTTTCTGCTGTTTTTCATTGTTGGATCTGCGTTTCGCAAAGGGAGATAC 77 Query 126 AGAAAGGAATAGCTTTGAATTGACAAG--G---TTTCTCTCTAATCCAACCGAATCTCAA 180 ||| |||||||||| ||||||||||| | ||| |||||||||| | |||||||||| Sbjct 78 AGAGAGGAATAGCTCAGAATTGACAAGTTGTTTTTTTTCTCTAATCC-AGCGAATCTCAA 136 Query 181 GCTTCCATGGCTCTCAATCTCCGTCAGAAACAGACTGAATGTGTAATCCGGATGTTGAAT 240 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||| Sbjct 137 GCTTCCATGGCTCTCAATCTCCGTCAGAAACAGACTGAATGTATAATCCGTATGCTAAAT 196 Query 241 CTGAACCAACCTTTGAATCCAAGTGGAACTGCGAACGAAGAAGTTTACAAGATCTTGATT 300 ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 197 CTGAATCAACCTCTGAATCCAAGTGGAACTGCGAATGAAGAAGTTTACAAGATCTTGATC 256 Query 301 TACGATAGGTTTTGTCAGAACATTCTATCTCCATTGACCCATGTCAAGGATCTGCGTAAG 360 ||||| | || ||||| ||||||||||| ||||||| | |||||||||||||||||||| Sbjct 257 TACGACACATTCTGTCAAAACATTCTATCACCATTGATCAATGTCAAGGATCTGCGTAAG 316 Query 361 CATGGAGTTACACTCTTCTTTCTCATAGACAAAGATCGACA-ACCTGTTCATGATGTTCC 419 |||||||||||||||| |||||||||||||||||||||| | || |||||||||| ||| Sbjct 317 CATGGAGTTACACTCTACTTTCTCATAGACAAAGATCGA-AGGCCCGTTCATGATG-TCC 374 Query 420 C-GCTGTCTACTTTGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGATGCTT 478 | ||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||| Sbjct 375 CTGCTGTCTTCTTTGTTCAACCCACTGAATCCAACCTACAGAGGATCATAGCTGATGCTT 434 Query 479 CTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGTAAGTTTC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 435 CTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGCAAGCTTC 494 Query 539 TTGAAGAGCTAGCTTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGC 598 |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| Sbjct 495 TTGAAGAGCTAGCTTCCGGGACTCTCAAATCTGGTTCTGTTGATAAAGTCTCGAAAGTGC 554 Query 599 ATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCGCTGGCTCAGCAAT 658 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 555 ATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCTCTGGCTCAGCAAT 614 Query 659 CTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGAT-TAATGAGATTATC 717 |||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||| ||| Sbjct 615 CTACTTATGTTCAAATGAATGATCCATCAGCCGGGGATAAAGAGATCGAA-GAGATAATC 673 Query 718 GAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGTTATC 777 |||||||| |||||||||||||||||||| ||||||||||| ||||| || ||||||||| Sbjct 674 GAAAGGGTTGCTAGTGGTTTGTTTTGTGTCTTGGTAACGCTCGGTGTTGTCCCTGTTATC 733 Query 778 CGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAAACTGAGG 837 || || ||| |||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 734 CGGTGTCCTCGTGGTGGACCGGCAGAGATGGTGGCTTCTTTGTTGGATCAGAAACTGAGG 793 Query 838 GATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTCGTTT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 GATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTCGTTT 853 Query 898 CAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTGGGATTCAGCA 956 |||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||| Sbjct 854 CAGCGTCCGCTCTTGTGCAT-TTTCGATAGGAATTTTGAGCTCTCGGTTGGGATTCAGCA 912 Query 957 TGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGTTAAAGCTCAACCAATTGAA 1016 ||||||||||||||||||||| ||||| || ||||||| ||||||||||||| ||||| Sbjct 913 TGATTTCAGATACCGGCCTCTTGTTCATGACGTTCTCGACTTAAAGCTCAACCGATTGAC 972 Query 1017 AGTGCAGGGAGAGAAAGGACCACCGAAATCGTTTGAGCTGGACAGTTCGGACCCATTCTG 1076 ||||||| |||||||||| | |||||||||||| ||||||||| | ||||||||||| Sbjct 973 CGTGCAGGCAGAGAAAGGAGGAAAGAAATCGTTTGATCTGGACAGTGCTGACCCATTCTG 1032 Query 1077 GTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATCGAAACACAGTTGAA 1136 ||||||||||||| |||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 1033 GTCAGCAAACAGTTCTCTGGAGTTTCCAGAAGTCGCTGTGGAGATTGAAACGCAGTTGAA 1092 Query 1137 CAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGTGGGAGCGGCGCTGA 1196 |||||||||||||||||| || ||||||||||||| |||||| |||||||| ||| |||| Sbjct 1093 CAAGTACAAGAGAGACGTGGAGGAGGTTAACAAGAGAACCGGCGGTGGGAGTGGCACTGA 1152 Query 1197 GTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCATCTCATGAACACTGTGAA 1256 ||||||||||||||||||||| ||||||| ||| | | ||||||||| || ||||||| Sbjct 1153 GTTTGATGGGACAGATCTGATCGGAAACA-CCA-A---A-CATCTCATGGACGCTGTGAA 1206 Query 1257 ATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAACACACCAATATCGCAAC 1316 ||||||||||| ||||||||| ||||| |||||||||||||||||||||| || ||||| Sbjct 1207 TTCGCTCCCGGAATTAACTGAGAGAAAGCAAGTGATTGACAAACACACCAACATTGCAAC 1266 Query 1317 AGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAAGCGA 1376 |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1267 CGCGCTCCTAGGACAGATCAAGGAGAGATCTATCGACGCTTTCACTAAGAAAGAAAGCGA 1326 Query 1377 CATGATGATGAGGGGCGGAATCGACAGAACTGAACTTATGGCTGCTCTGAAAGGCAAAGG 1436 ||||||||||| || |||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 1327 GATGATGATGAGAGGTGGAATCGACAGAGCTGAACTTATGGCTACTCTAAAAGGCAAAGG 1386 Query 1437 GACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACCTGATCTCCACAGAAACCATAAA 1496 |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 1387 TACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACTTGATTTCCACAGAGACCATAAA 1446 Query 1497 CCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATGAAGCTGAGGCTGATACAAGTGC 1556 |||||| ||||| ||| | ||||| ||||||||||| ||||| |||||||| ||||| || Sbjct 1447 CCAATCCGAAGTGGAATCCGTGGAAGCAGCATTGAACGAAGCCGAGGCTGACACAAGCGC 1506 Query 1557 GTTTCAGTATGTAAAGAAAATCAAATCGTTAAACGCATCTTTTGCAGCTACATCAGCGAA 1616 ||||||||| || |||||||||||||| ||||||| |||| |||||||| | |||||||| Sbjct 1507 GTTTCAGTACGTGAAGAAAATCAAATCCTTAAACGTATCTCTTGCAGCTTCTTCAGCGAA 1566 Query 1617 TTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCTATAAG 1676 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567 CTCAGCGAGTAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCTATAAG 1626 Query 1677 CGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTGACTCG 1736 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1627 CGCAGTCACTGCAGGAGTGAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTGACTCG 1686 Query 1737 AACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCGGAGATCGATTCTTACCGCTTCCT 1796 ||| || ||||||||||||||||||||||||||||| ||||| || ||||||| |||||| Sbjct 1687 AACCGTTGAAGCTTTAACAGAAGGAAAACCAAACCCAGAGATTGACTCTTACCTCTTCCT 1746 Query 1797 GGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCATGTAAAAGGACCGTTCAG 1856 ||||||||||||||||||||| |||||||||||||||||||| || || |||||||| || Sbjct 1747 GGACCCAAGAGCTCCAAAGTCTTCTAGCTCCGGTGGTAGCCACGTGAAGGGACCGTTTAG 1806 Query 1857 AGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTATGGAAGTTTGCAGGA 1916 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1807 AGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTACGGGAGTTTGCAGGA 1866 Query 1917 GTTGACTCAGAGACAGTTAACCGTTAAAAACGTTATTTATGGAGCCACTGAGATTCTTAA 1976 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1867 GCTGACTCAGAGACAGTTAACCGTTAAAAACGTTATATATGGAGCCACTGAGATTCTTAC 1926 Query 1977 CGGAGGTGAGTTGGTGGAGCAGCTTGGACTTTTGGGAAAGAAGATGGGATTAGGAGGTCC 2036 ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1927 CGGAGGTGAATTGGTGGAACAGCTTGGACTTTTGGGAAAGAAGATGGGATTGGGAGGTCC 1986 Query 2037 GGTCGCTTCAACGTCATTGTCTGGTGGTCACTGAGTGTTACTCACTGTTActttcttttt 2096 ||||||||||||||||| ||||||| |||||||||||| ||||||| |||||||||| Sbjct 1987 GGTCGCTTCAACGTCATCGTCTGGT---CACTGAGTGTTAGACACTGTTGCTTTCTTTTT 2043 Query 2097 t-cttttggcttttgagag 2114 | |||||||||||| |||| Sbjct 2044 TTCTTTTGGCTTTTCAGAG 2062 > Ahg480698 jgi|Araly1|480698|fgenesh2_kg.3__3399__AT2G17980.1 Length=2125 Score = 2198 bits (1190), Expect = 0.0 Identities = 1435/1550 (93%), Gaps = 29/1550 (2%) Strand=Plus/Plus Query 655 CAATCTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGATT-AATGAGAT 713 |||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||| Sbjct 579 CAATCTACCTATGTTCGGATGAATGACCCATCAGCAGGGGATAAAGAGATTGAA-GAGAT 637 Query 714 TATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGT 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 TATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGT 697 Query 774 TATCCGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAAACT 833 |||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 698 TATCCGGTGCCCTCGTGGTGGACCTGCGGAGATGGTGGCGTCTTTGTTGGATCAGAAACT 757 Query 834 GAGGGATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTC 893 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 758 GAGGGATCATCTCTTGTCCAAGAATAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTC 817 Query 894 GTTTCAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTGGGATTC 952 |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 818 GTTTCAGCGTCCGCTCTTGTGCAT-TTTCGATAGGAACTTTGAGCTCTCGGTTGGGATTC 876 Query 953 AGCATGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGTTAAAGCTCAACCAAT 1012 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || Sbjct 877 AGCATGATTTCAGATACCGGCCTCTTGTTCACGATGTTCTCGGGTTAAAGCTGAACCGAT 936 Query 1013 TGAAAGTGCAGGGAGAGAAAGGACCACCGAAATCGTTTGAGCTGGACAGTTCGGACCCAT 1072 |||| ||||| ||||||||||| | |||||||||||||||||||||||| ||||||| Sbjct 937 TGAACGTGCAAGGAGAGAAAGGTGGAATGAAATCGTTTGAGCTGGACAGTTCCGACCCAT 996 Query 1073 TCTGGTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATCGAAACACAGT 1132 |||||||||| |||||| |||| ||||||||||| |||||||||||||| ||||| |||| Sbjct 997 TCTGGTCAGCTAACAGTTCTCTAGAGTTTCCAGAAGTCGCTGTGGAGATTGAAACCCAGT 1056 Query 1133 TGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGTGGGAGCGGCG 1192 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1057 TGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAGAACCGGAGGTGGGAGCGGGG 1116 Query 1193 CTGAGTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCATCTCATGAACACTG 1252 |||||||||| |||||||||||||||||||||| ||| | | |||||||||||| ||| Sbjct 1117 CTGAGTTTGACGGGACAGATCTGATTGGAAACA-CCA-A---A-CATCTCATGAACGCTG 1170 Query 1253 TGAAATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAACACACCAATATCG 1312 |||| || ||||| || ||||||||| ||||| |||||||||||||||||||||| || | Sbjct 1171 TGAACTCACTCCCAGAATTAACTGAGAGAAAGCAAGTGATTGACAAACACACCAACATTG 1230 Query 1313 CAACAGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAA 1372 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 CAACCGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAA 1290 Query 1373 GCGACATGATGATGAGGGGCGGAATCGACAGAACTGAACTTATGGCTGCTCTGAAAGGCA 1432 |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| Sbjct 1291 GCGACATGATGATGAGAGGCGGAATCGACAGAACCGAGCTTATGGCTGCTCTGAAAGGCA 1350 Query 1433 AAGGGACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACCTGATCTCCACAGAAACCA 1492 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1351 AAGGGACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACTTGATCTCCACAGAAACCA 1410 Query 1493 TAAACCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATGAAGCTGAGGCTGATACAA 1552 |||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 1411 TAAACCAATCCGAAGTCGAAGCCGTGGAAGCAGCATTGAATGAAGCTGAGGCTGACACAA 1470 Query 1553 GTGCGTTTCAGTATGTAAAGAAAATCAAATCGTTAAACGCATCTTTTGCAGC-TACATCA 1611 | ||||||||||| || ||||| |||||||| ||||||| |||| ||||||| | | || Sbjct 1471 GCGCGTTTCAGTACGTGAAGAAGATCAAATCCTTAAACGTATCTCTTGCAGCAT-CTTCG 1529 Query 1612 GCGAATTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCT 1671 || || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1530 GCAAACTCAGCGAGCAGAAGCAACATTGTAGACTGGGCTGAGAAGCTTTACGGACAGTCT 1589 Query 1672 ATAAGCGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTG 1731 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1590 ATAAGCGCAGTCACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTG 1649 Query 1732 ACTCGAACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCGGAGATCGATTCTTACCGC 1791 |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1650 ACTCGAACCGTTGAAGCTTTAACGGAAGGAAAACCAAACCCGGAGATCGATTCTTACCTC 1709 Query 1792 TTCCTGGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCATGTAAAAGGACCG 1851 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 1710 TTCCTGGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCACGTGAAGGGACCG 1769 Query 1852 TTCAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTATGGAAGTTTG 1911 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1770 TTTAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAATATGGAAGTTTG 1829 Query 1912 CAGGAGTTGACTCAGAGACAGTTAACCGTTAAAAACGTTATTTATGGAGCCACTGAGATT 1971 |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1830 CAGGAGCTGACTCAGAGACAGTTAACCGTTAAGAACGTAATTTATGGAGCCACTGAGATT 1889 Query 1972 CTTAACGGAGGTGAGTTGGTGGAGCAGCTTGGAC-TTTTGGGAAAGAAGATGGGATTAGG 2030 |||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||| || Sbjct 1890 CTTACCGGAGGTGAATTGGTGGAGCAGCTTGG-CGTTTTGGGAAAGAAGATGGGATTGGG 1948 Query 2031 AGGTCCGGTCGCTTCAACGTCATTGTCTGGTGGTCACTGAGTGTTACTCACTGTTAc-tt 2089 ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || Sbjct 1949 AGGTCCGGTCGCTTCAACGTCATTGTCTGGT---CACTGAGTGTTACACACTGTTGCCTT 2005 Query 2090 tcttttttcttttggcttttgagagt-ttttttttATTAATCTATAAAATATAAATCCCC 2148 || ||||||||||| ||||| |||| |||||||| ||||||||||||| || |||| Sbjct 2006 TCATTTTTCTTTTGCCTTTTCAGAGACTTTTTTTT-TTAATCTATAAAA-AT----CCCC 2059 Query 2149 AGTGGTGAATTATTTAACAAACAGTTTACAGTCTCGTTATAACATTTTCT 2198 ||||||| ||||||||||||||||| ||||||||||| || | ||||| Sbjct 2060 AGTGGTG--TTATTTAACAAACAGTT--CAGTCTCGTTAAAAAAATTTCT 2105 Score = 721 bits (390), Expect = 0.0 Identities = 541/607 (89%), Gaps = 37/607 (6%) Strand=Plus/Plus Query 20 ATCAGTGATTTTTGGGTTTGAAATTTCTCTAGATCGATTTTGGATTTAGATCTCTTTGTT 79 |||| |||||| |||||||||| |||||||||||||||||| |||||||||| ||||||| Sbjct 1 ATCACTGATTTCTGGGTTTGAAGTTTCTCTAGATCGATTTTAGATTTAGATCCCTTTGTT 60 Query 80 TCTACTGCTTTTCATCGTTGGATCTGCGTTTTGCAAAGGGAGATACAGAAAGGAATAGCT 139 |||||||| || | || | | || || | || || |||||||||| Sbjct 61 TCTACTGC--TT--T--TT--A--T-CG--TT-C------AG----AG--AGGAATAGCT 94 Query 140 TTGAA-TTGACAAGG----TTT-CTCTCTAATCCAACCGAATCTCAAGCTTCCATGGCTC 193 ||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 95 CAGAATTTGACAAGGTTTTTTTGCTCTCTAATCC-ACCGAATCTCAAGCTTCCATGGCTC 153 Query 194 TCAATCTCCGTCAGAAACAGACTGAATGTGTAATCCGGATGTTGAATCTGAACCAACCTT 253 ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| Sbjct 154 TCAATCTCCGTCAGAAACATACTGAATGTATAATCCGGATGCTGAATCTGAACCAACCTT 213 Query 254 TGAATCCAAGTGGAACTGCGAACGAAGAAGTTTACAAGATCTTGATTTACGATAGGTTTT 313 ||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || | Sbjct 214 TGAATCCAAGTGGAACTGCAAACGAAGAAGTTTACAAGATCTTGATCTACGACAGATTCT 273 Query 314 GTCAGAACATTCTATCTCCATTGACCCATGTCAAGGATCTGCGTAAGCATGGAGTTACAC 373 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 274 GTCAGAACATTCTATCTCCATTGATCCATGTCAAGGATCTGCGTAAACATGGAGTTACAC 333 Query 374 TCTT-CTTTCTCATAGACAAAGATCGACA-ACCTGTTCATGATGTTCCCGCTGTCTACTT 431 | || |||||||||||||||||||||| | ||| ||||| |||||||||||||| ||||| Sbjct 334 T-TTACTTTCTCATAGACAAAGATCGA-AGACCCGTTCACGATGTTCCCGCTGTGTACTT 391 Query 432 TGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGATGCTTCTAGATCTCTCTA 491 ||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||| Sbjct 392 TGTTCAACCCACTGAATCTAACATCCAGAGGATCATAGCTGATGCTTCTAGATCTCTCTA 451 Query 492 CGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGTAAGTTTCTTGAAGAGCTAGC 551 ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| Sbjct 452 CGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGCAAGCATCTTGAGGAGCTAGC 511 Query 552 TTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGCATGATCAGTATCT 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 512 TTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGCATGATCAGTATTT 571 Query 612 GGAGTTT 618 ||||||| Sbjct 572 GGAGTTT 578 > Ahg944805 jgi|Araly1|944805|scaffold_701034.1 Length=1864 Score = 1249 bits (676), Expect = 0.0 Identities = 1477/1853 (80%), Gaps = 97/1853 (5%) Strand=Plus/Plus Query 183 TTCCATGGCTCTCAATCTCCGTC-AGAAACAGACT-GAATGTGTAATCCGGATGTTGAAT 240 ||||||||||||||||||||| | | ||||||| | |||||| ||||||||||| |||| Sbjct 19 TTCCATGGCTCTCAATCTCCG-CAACAAACAGA-TGGAATGTATAATCCGGATGCTGAAC 76 Query 241 CTGAACCAACCTTTGAATCCAAGTGGAACTGCGAACGAAGAAGT-TTACAAGATCTTGAT 299 ||||| ||||| |||||||| | || || | | ||| | ||||||| |||||| Sbjct 77 CTGAATCAACCATTGAATCC-A----AA---CG-A-G--GAA-TGTTACAAGGCCTTGAT 123 Query 300 TTACGATAGGTTT-TGTCAGAACATTCTATCTCCAT-TGACCCATGTCAAGGATCTGCGT 357 ||||| | ||| ||| |||| ||| | |||| | ||| || || |||||||| ||| Sbjct 124 CTACGA-CGATTTCTGTGAGAAGATTATCGCTCC-TCTGATGCAAGTGAAGGATCTTCGT 181 Query 358 AAGCATGGAGTTACAC-TCTTCTT-TCTCAT-AGACAAAGATCGACAACCTGTTCATGAT 414 || || |||||||||| || ||| || ||| | ||||| | || || |||||| |||| Sbjct 182 AAACAAGGAGTTACACTTC-CCTTGTC-CATCA-ACAAAAAGAGAGAAGCTGTTCGTGAT 238 Query 415 GTTCCCGCTGTCTACTTTGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGAT 474 | | | |||||||||||| ||||||| |||||||||||| ||||||| ||||| || ||| Sbjct 239 GCTGCAGCTGTCTACTTTCTTCAACCCACTGAATCCAACATCCAGAGAATCATTGCAGAT 298 Query 475 GCTTCTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCG-ATCCCTCGTAA 533 |||||||||||||| ||| || ||| ||||||||||||||||| ||| |||||||| Sbjct 299 GCTTCTAGATCTCTTTACCATTCCTATCATCTGAATTTCTCGT-ATCGTATCCCTCGCCC 357 Query 534 GTTTCTTGAAGA-GCTAGCTTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCG- 591 | | || ||| | || ||||||| |||||| || || ||||| |||| || || | Sbjct 358 GCTCCTAGAA-ACTCTCGCTTCTGCGACTCTGAATTCCGGTTCCACTGAG--AGACTTGC 414 Query 592 AA-AGTGCATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCGCTGGC 650 || ||||||||||||||||| |||||||| ||||||||||||||| |||| || |||| Sbjct 415 AACGGTGCATGATCAGTATCTCGAGTTTGTTACTTTGGAAGATAACATGTTTTCTTTGGC 474 Query 651 TCAGCAATCTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGATTAATGA 710 |||| |||||| |||| |||| ||||||| ||||||||||| || | |||||| | || Sbjct 475 TCAGGAATCTATCTATCTTCAGTTGAATGATCCATCAGCAGGAGATAGAGAGATCGAGGA 534 Query 711 GATTATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCC 770 ||||||||||| |||||||| ||| |||| ||||| |||| ||||||||||||||| || Sbjct 535 GATTATCGAAAAGGTCGCTAATGGGCTGTTCTGTGTATTGGCAACGCTTGGTGTGGTGCC 594 Query 771 TGTTATCCGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAA 830 ||| |||||||| ||| |||||||||| || |||||||| || |||| |||||||||||| Sbjct 595 TGTAATCCGATGTCCTCGTGGTGGACCAGCGGAGATGGTTGCATCTTCGTTGGATCAGAA 654 Query 831 ACTGAGGGATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGT---GGCGGTTTCAT 887 |||||||||||||||| |||| |||| |||||||||||| |||||| ||||||||||| Sbjct 655 ACTGAGGGATCATCTTCTGTCTAAGATCAATCTGTTTACCGAAGGTGGAGGCGGTTTCAT 714 Query 888 GAGCTCGTTTCAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTG 946 || ||||||||||| || | ||||| || ||| ||||| |||||||| |||||||||| Sbjct 715 TAGTTCGTTTCAGCGGCCTTTGTTGTGTAT-TTTCGATAGAAACTTTGAACTCTCGGTTG 773 Query 947 GGATTCAGCATGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGT-TAAAGCTC 1005 ||||||||||||||||||||||| ||||||| ||||| |||||| | |||| |||||||| Sbjct 774 GGATTCAGCATGATTTCAGATACAGGCCTCTTGTTCATGATGTTTT-GGGTCTAAAGCTC 832 Query 1006 AACCAATT-GAAAGTGCAGGGAGAGAAAG--GACCACCGAAATCGTTTGAGCTGGACAGT 1062 ||| | || |||| ||| || | |||| || | |||| | |||| | |||||| Sbjct 833 AAC-AGTTTGAAATTGCCTGGCCAAAAAGATGATAA--GAAAACATTTG---TAGACAGT 886 Query 1063 TCGGACCCATTCTGGTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATC 1122 || ||||| |||||||||||||| || || | |||||||| || |||||||| || ||| Sbjct 887 TCAGACCCGTTCTGGTCAGCAAATGGTTCTTTAGAGTTTCCTGAAGTCGCTGTAGAAATC 946 Query 1123 GAAACACAGTTGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGT 1182 ||||| |||||||| |||||||| | |||||| ||||||||||||| || ||| |||||| Sbjct 947 GAAACTCAGTTGAATAAGTACAAAAAAGACGTGGAAGAGGTTAACAGGAGAACTGGAGGT 1006 Query 1183 GGGAGCGGC-G--CTGAGTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCAT 1239 |||| ||| | | |||||||||||| | ||||||||||| |||| ||| | | ||| Sbjct 1007 GGGAACGGGAGTGCAGAGTTTGATGGGGCTGATCTGATTGGGAACA-CCA-A--G--CAT 1060 Query 1240 CTCATGAACACTGTGAAATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAA 1299 || ||||| ||||||| || || |||||||| || ||| ||||||| ||||||||||| Sbjct 1061 CTGATGAATGCTGTGAACTCACTTCCGGAGTTGACAGAGAGAAAGAAGGTGATTGACAAG 1120 Query 1300 CACACCAATATCGCAACAGCGCT-CTTAGGACAGATCAAGGAGAGATCTATTGACGCTTT 1358 |||||||| || || || ||||| || |||| ||||||||||| ||||| | || || | Sbjct 1121 CACACCAACATTGCGACTGCGCTGCT-AGGAGAGATCAAGGAGCGATCTCTGGATGCATA 1179 Query 1359 CACTAAGAAAGA-AAGCGACATGATGATGAGGGGCGGAATCGACAGAA-CTGAACTTATG 1416 |||||||||||| || || |||||| |||| ||| | || ||||| | | || ||| | Sbjct 1180 CACTAAGAAAGAGAAT-GAGATGATGGTGAGAGGCAGCATAGACAGGAGC-GAGCTTCTA 1237 Query 1417 GCTGCTCTGAAAGGCAAAGGG-AC-AAAGATGGACAAGCTCCGGTTTGCAATCATGTACC 1474 ||| | ||||||| || ||| || ||| ||||||||| | || ||||| |||||||||| Sbjct 1238 TCTGTTTTGAAAGGGAA-GGGTACCAAA-ATGGACAAGTTACGATTTGCCATCATGTACC 1295 Query 1475 TGATCTCCACAGAAACCATAAACCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATG 1534 | |||||| |||||||| ||||| | ||||||||||| ||||| || |||||| || Sbjct 1296 TAATCTCCTTGGAAACCATCAACCAGGCTGAAGTTGAAGCCGTGGAAGCGGCATTGCGTG 1355 Query 1535 AAGCTGAGGCTGATACAAGTGCGTTTCAGTATGTAAAGAAA-ATCAAATCGTTAAACGCA 1593 |||||||||| |||||||| |||||||||||||| || ||| ||||| ||| | || | Sbjct 1356 AAGCTGAGGCCGATACAAGAGCGTTTCAGTATGTGAA-AAAGATCAAGTCGCTGAATGTG 1414 Query 1594 TCTTTTGCAGCTACATCAGCGAATTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAG 1653 ||||| ||||| | ||||| || || || | | |||||||||| |||||||| ||| Sbjct 1415 TCTTTGGCAGC--C-TCAGC-AA----GC-AG-A-A-GCAACATTGTTGACTGGGCTGAG 1462 Query 1654 AAGCTTTACGGACAGTCTATAAGCGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGT 1713 |||||||| || |||||||||||||| || |||||||| ||||||||||| ||||| ||| Sbjct 1463 AAGCTTTATGGTCAGTCTATAAGCGCGGTCACTGCAGGGGTCAAGAATCTCTTATCAAGT 1522 Query 1714 GATCAACAATTGGCAGTGACTCGAACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCG 1773 ||||| ||| |||| ||| | || ||||| ||||| ||||| || |||||||||||||| Sbjct 1523 GATCAGCAACTGGCGGTGGCGCGGACAGTTGAAGCCTTAACTGAGGGAAAACCAAACCCA 1582 Query 1774 GAGATCGATTCTTACCGCTTCCTGGACCCAAGAGCTCCAAAGTC-G--TCTAGCTCCGGT 1830 || | |||||| |||| | | ||||| || |||||| ||||||| | ||||| | ||| Sbjct 1583 GAAACCGATTCATACCTCATGCTGGATCCGAGAGCTTCAAAGTCAGGATCTAG-T--GGT 1639 Query 1831 GGTAGCCATGTAAAAGGACCGTTCAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAAC 1890 ||| |||| || || || |||| |||||| ||||| |||||||| |||| ||||||| Sbjct 1640 AATAGTTATGTGAAGGGGCCTTTCAAAGAAGCCATAGTTTTCATGATTGGTGCAGGTAAC 1699 Query 1891 TATGTTGAGTATGGAAGTTTGCAGGAGTTGACTCAGAGACA-GTTAACCGTTAAAAACGT 1949 || | || ||| | |||||||||||| | | ||| |||| | | ||||| ||| | Sbjct 1700 TACATCGAATATAGCAGTTTGCAGGAGCTCTCGCAGCGACAAGAGATG-GTTAAGAACAT 1758 Query 1950 TATTTATGGAGCCACTGAGATTCTTAAC-GGAGGTGAG-TTGGTGGAGCAGCT 2000 ||| ||||||||||| ||||| |||| | ||| |||| ||| || ||||||| Sbjct 1759 TATATATGGAGCCACAGAGATCCTTA-CTGGAACTGAGCTTGTTG-AGCAGCT 1809 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85207878065 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5