BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17980.1
Length=2263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489836 jgi|Araly1|489836|fgenesh2_kg.6__2970__AT2G17980.1 2822 0.0
Ahg480698 jgi|Araly1|480698|fgenesh2_kg.3__3399__AT2G17980.1 2198 0.0
Ahg944805 jgi|Araly1|944805|scaffold_701034.1 1249 0.0
> Ahg489836 jgi|Araly1|489836|fgenesh2_kg.6__2970__AT2G17980.1
Length=2062
Score = 2822 bits (1528), Expect = 0.0
Identities = 1886/2059 (92%), Gaps = 24/2059 (1%)
Strand=Plus/Plus
Query 66 TAGATCTCTTTGTTTCTACTGCTTTTCATCGTTGGATCTGCGTTTTGCAAAGGGAGATAC 125
||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 18 TAGATCTCTTTGTTTCTGCTGTTTTTCATTGTTGGATCTGCGTTTCGCAAAGGGAGATAC 77
Query 126 AGAAAGGAATAGCTTTGAATTGACAAG--G---TTTCTCTCTAATCCAACCGAATCTCAA 180
||| |||||||||| ||||||||||| | ||| |||||||||| | ||||||||||
Sbjct 78 AGAGAGGAATAGCTCAGAATTGACAAGTTGTTTTTTTTCTCTAATCC-AGCGAATCTCAA 136
Query 181 GCTTCCATGGCTCTCAATCTCCGTCAGAAACAGACTGAATGTGTAATCCGGATGTTGAAT 240
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||
Sbjct 137 GCTTCCATGGCTCTCAATCTCCGTCAGAAACAGACTGAATGTATAATCCGTATGCTAAAT 196
Query 241 CTGAACCAACCTTTGAATCCAAGTGGAACTGCGAACGAAGAAGTTTACAAGATCTTGATT 300
||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 197 CTGAATCAACCTCTGAATCCAAGTGGAACTGCGAATGAAGAAGTTTACAAGATCTTGATC 256
Query 301 TACGATAGGTTTTGTCAGAACATTCTATCTCCATTGACCCATGTCAAGGATCTGCGTAAG 360
||||| | || ||||| ||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 257 TACGACACATTCTGTCAAAACATTCTATCACCATTGATCAATGTCAAGGATCTGCGTAAG 316
Query 361 CATGGAGTTACACTCTTCTTTCTCATAGACAAAGATCGACA-ACCTGTTCATGATGTTCC 419
|||||||||||||||| |||||||||||||||||||||| | || |||||||||| |||
Sbjct 317 CATGGAGTTACACTCTACTTTCTCATAGACAAAGATCGA-AGGCCCGTTCATGATG-TCC 374
Query 420 C-GCTGTCTACTTTGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGATGCTT 478
| ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 375 CTGCTGTCTTCTTTGTTCAACCCACTGAATCCAACCTACAGAGGATCATAGCTGATGCTT 434
Query 479 CTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGTAAGTTTC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 435 CTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGCAAGCTTC 494
Query 539 TTGAAGAGCTAGCTTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGC 598
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 495 TTGAAGAGCTAGCTTCCGGGACTCTCAAATCTGGTTCTGTTGATAAAGTCTCGAAAGTGC 554
Query 599 ATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCGCTGGCTCAGCAAT 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 555 ATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCTCTGGCTCAGCAAT 614
Query 659 CTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGAT-TAATGAGATTATC 717
|||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||| |||
Sbjct 615 CTACTTATGTTCAAATGAATGATCCATCAGCCGGGGATAAAGAGATCGAA-GAGATAATC 673
Query 718 GAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGTTATC 777
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 674 GAAAGGGTTGCTAGTGGTTTGTTTTGTGTCTTGGTAACGCTCGGTGTTGTCCCTGTTATC 733
Query 778 CGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAAACTGAGG 837
|| || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 734 CGGTGTCCTCGTGGTGGACCGGCAGAGATGGTGGCTTCTTTGTTGGATCAGAAACTGAGG 793
Query 838 GATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTCGTTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTCGTTT 853
Query 898 CAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTGGGATTCAGCA 956
|||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 854 CAGCGTCCGCTCTTGTGCAT-TTTCGATAGGAATTTTGAGCTCTCGGTTGGGATTCAGCA 912
Query 957 TGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGTTAAAGCTCAACCAATTGAA 1016
||||||||||||||||||||| ||||| || ||||||| ||||||||||||| |||||
Sbjct 913 TGATTTCAGATACCGGCCTCTTGTTCATGACGTTCTCGACTTAAAGCTCAACCGATTGAC 972
Query 1017 AGTGCAGGGAGAGAAAGGACCACCGAAATCGTTTGAGCTGGACAGTTCGGACCCATTCTG 1076
||||||| |||||||||| | |||||||||||| ||||||||| | |||||||||||
Sbjct 973 CGTGCAGGCAGAGAAAGGAGGAAAGAAATCGTTTGATCTGGACAGTGCTGACCCATTCTG 1032
Query 1077 GTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATCGAAACACAGTTGAA 1136
||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1033 GTCAGCAAACAGTTCTCTGGAGTTTCCAGAAGTCGCTGTGGAGATTGAAACGCAGTTGAA 1092
Query 1137 CAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGTGGGAGCGGCGCTGA 1196
|||||||||||||||||| || ||||||||||||| |||||| |||||||| ||| ||||
Sbjct 1093 CAAGTACAAGAGAGACGTGGAGGAGGTTAACAAGAGAACCGGCGGTGGGAGTGGCACTGA 1152
Query 1197 GTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCATCTCATGAACACTGTGAA 1256
||||||||||||||||||||| ||||||| ||| | | ||||||||| || |||||||
Sbjct 1153 GTTTGATGGGACAGATCTGATCGGAAACA-CCA-A---A-CATCTCATGGACGCTGTGAA 1206
Query 1257 ATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAACACACCAATATCGCAAC 1316
||||||||||| ||||||||| ||||| |||||||||||||||||||||| || |||||
Sbjct 1207 TTCGCTCCCGGAATTAACTGAGAGAAAGCAAGTGATTGACAAACACACCAACATTGCAAC 1266
Query 1317 AGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAAGCGA 1376
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1267 CGCGCTCCTAGGACAGATCAAGGAGAGATCTATCGACGCTTTCACTAAGAAAGAAAGCGA 1326
Query 1377 CATGATGATGAGGGGCGGAATCGACAGAACTGAACTTATGGCTGCTCTGAAAGGCAAAGG 1436
||||||||||| || |||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 1327 GATGATGATGAGAGGTGGAATCGACAGAGCTGAACTTATGGCTACTCTAAAAGGCAAAGG 1386
Query 1437 GACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACCTGATCTCCACAGAAACCATAAA 1496
|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 1387 TACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACTTGATTTCCACAGAGACCATAAA 1446
Query 1497 CCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATGAAGCTGAGGCTGATACAAGTGC 1556
|||||| ||||| ||| | ||||| ||||||||||| ||||| |||||||| ||||| ||
Sbjct 1447 CCAATCCGAAGTGGAATCCGTGGAAGCAGCATTGAACGAAGCCGAGGCTGACACAAGCGC 1506
Query 1557 GTTTCAGTATGTAAAGAAAATCAAATCGTTAAACGCATCTTTTGCAGCTACATCAGCGAA 1616
||||||||| || |||||||||||||| ||||||| |||| |||||||| | ||||||||
Sbjct 1507 GTTTCAGTACGTGAAGAAAATCAAATCCTTAAACGTATCTCTTGCAGCTTCTTCAGCGAA 1566
Query 1617 TTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCTATAAG 1676
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 CTCAGCGAGTAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCTATAAG 1626
Query 1677 CGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTGACTCG 1736
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 CGCAGTCACTGCAGGAGTGAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTGACTCG 1686
Query 1737 AACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCGGAGATCGATTCTTACCGCTTCCT 1796
||| || ||||||||||||||||||||||||||||| ||||| || ||||||| ||||||
Sbjct 1687 AACCGTTGAAGCTTTAACAGAAGGAAAACCAAACCCAGAGATTGACTCTTACCTCTTCCT 1746
Query 1797 GGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCATGTAAAAGGACCGTTCAG 1856
||||||||||||||||||||| |||||||||||||||||||| || || |||||||| ||
Sbjct 1747 GGACCCAAGAGCTCCAAAGTCTTCTAGCTCCGGTGGTAGCCACGTGAAGGGACCGTTTAG 1806
Query 1857 AGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTATGGAAGTTTGCAGGA 1916
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1807 AGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTACGGGAGTTTGCAGGA 1866
Query 1917 GTTGACTCAGAGACAGTTAACCGTTAAAAACGTTATTTATGGAGCCACTGAGATTCTTAA 1976
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1867 GCTGACTCAGAGACAGTTAACCGTTAAAAACGTTATATATGGAGCCACTGAGATTCTTAC 1926
Query 1977 CGGAGGTGAGTTGGTGGAGCAGCTTGGACTTTTGGGAAAGAAGATGGGATTAGGAGGTCC 2036
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1927 CGGAGGTGAATTGGTGGAACAGCTTGGACTTTTGGGAAAGAAGATGGGATTGGGAGGTCC 1986
Query 2037 GGTCGCTTCAACGTCATTGTCTGGTGGTCACTGAGTGTTACTCACTGTTActttcttttt 2096
||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||
Sbjct 1987 GGTCGCTTCAACGTCATCGTCTGGT---CACTGAGTGTTAGACACTGTTGCTTTCTTTTT 2043
Query 2097 t-cttttggcttttgagag 2114
| |||||||||||| ||||
Sbjct 2044 TTCTTTTGGCTTTTCAGAG 2062
> Ahg480698 jgi|Araly1|480698|fgenesh2_kg.3__3399__AT2G17980.1
Length=2125
Score = 2198 bits (1190), Expect = 0.0
Identities = 1435/1550 (93%), Gaps = 29/1550 (2%)
Strand=Plus/Plus
Query 655 CAATCTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGATT-AATGAGAT 713
|||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||
Sbjct 579 CAATCTACCTATGTTCGGATGAATGACCCATCAGCAGGGGATAAAGAGATTGAA-GAGAT 637
Query 714 TATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGT 697
Query 774 TATCCGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAAACT 833
|||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 698 TATCCGGTGCCCTCGTGGTGGACCTGCGGAGATGGTGGCGTCTTTGTTGGATCAGAAACT 757
Query 834 GAGGGATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTC 893
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 758 GAGGGATCATCTCTTGTCCAAGAATAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTC 817
Query 894 GTTTCAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTGGGATTC 952
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 818 GTTTCAGCGTCCGCTCTTGTGCAT-TTTCGATAGGAACTTTGAGCTCTCGGTTGGGATTC 876
Query 953 AGCATGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGTTAAAGCTCAACCAAT 1012
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 877 AGCATGATTTCAGATACCGGCCTCTTGTTCACGATGTTCTCGGGTTAAAGCTGAACCGAT 936
Query 1013 TGAAAGTGCAGGGAGAGAAAGGACCACCGAAATCGTTTGAGCTGGACAGTTCGGACCCAT 1072
|||| ||||| ||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 937 TGAACGTGCAAGGAGAGAAAGGTGGAATGAAATCGTTTGAGCTGGACAGTTCCGACCCAT 996
Query 1073 TCTGGTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATCGAAACACAGT 1132
|||||||||| |||||| |||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct 997 TCTGGTCAGCTAACAGTTCTCTAGAGTTTCCAGAAGTCGCTGTGGAGATTGAAACCCAGT 1056
Query 1133 TGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGTGGGAGCGGCG 1192
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1057 TGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAGAACCGGAGGTGGGAGCGGGG 1116
Query 1193 CTGAGTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCATCTCATGAACACTG 1252
|||||||||| |||||||||||||||||||||| ||| | | |||||||||||| |||
Sbjct 1117 CTGAGTTTGACGGGACAGATCTGATTGGAAACA-CCA-A---A-CATCTCATGAACGCTG 1170
Query 1253 TGAAATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAACACACCAATATCG 1312
|||| || ||||| || ||||||||| ||||| |||||||||||||||||||||| || |
Sbjct 1171 TGAACTCACTCCCAGAATTAACTGAGAGAAAGCAAGTGATTGACAAACACACCAACATTG 1230
Query 1313 CAACAGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAA 1372
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 CAACCGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAA 1290
Query 1373 GCGACATGATGATGAGGGGCGGAATCGACAGAACTGAACTTATGGCTGCTCTGAAAGGCA 1432
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1291 GCGACATGATGATGAGAGGCGGAATCGACAGAACCGAGCTTATGGCTGCTCTGAAAGGCA 1350
Query 1433 AAGGGACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACCTGATCTCCACAGAAACCA 1492
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1351 AAGGGACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACTTGATCTCCACAGAAACCA 1410
Query 1493 TAAACCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATGAAGCTGAGGCTGATACAA 1552
|||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1411 TAAACCAATCCGAAGTCGAAGCCGTGGAAGCAGCATTGAATGAAGCTGAGGCTGACACAA 1470
Query 1553 GTGCGTTTCAGTATGTAAAGAAAATCAAATCGTTAAACGCATCTTTTGCAGC-TACATCA 1611
| ||||||||||| || ||||| |||||||| ||||||| |||| ||||||| | | ||
Sbjct 1471 GCGCGTTTCAGTACGTGAAGAAGATCAAATCCTTAAACGTATCTCTTGCAGCAT-CTTCG 1529
Query 1612 GCGAATTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCT 1671
|| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1530 GCAAACTCAGCGAGCAGAAGCAACATTGTAGACTGGGCTGAGAAGCTTTACGGACAGTCT 1589
Query 1672 ATAAGCGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTG 1731
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 ATAAGCGCAGTCACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTG 1649
Query 1732 ACTCGAACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCGGAGATCGATTCTTACCGC 1791
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1650 ACTCGAACCGTTGAAGCTTTAACGGAAGGAAAACCAAACCCGGAGATCGATTCTTACCTC 1709
Query 1792 TTCCTGGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCATGTAAAAGGACCG 1851
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1710 TTCCTGGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCACGTGAAGGGACCG 1769
Query 1852 TTCAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTATGGAAGTTTG 1911
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1770 TTTAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAATATGGAAGTTTG 1829
Query 1912 CAGGAGTTGACTCAGAGACAGTTAACCGTTAAAAACGTTATTTATGGAGCCACTGAGATT 1971
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1830 CAGGAGCTGACTCAGAGACAGTTAACCGTTAAGAACGTAATTTATGGAGCCACTGAGATT 1889
Query 1972 CTTAACGGAGGTGAGTTGGTGGAGCAGCTTGGAC-TTTTGGGAAAGAAGATGGGATTAGG 2030
|||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 1890 CTTACCGGAGGTGAATTGGTGGAGCAGCTTGG-CGTTTTGGGAAAGAAGATGGGATTGGG 1948
Query 2031 AGGTCCGGTCGCTTCAACGTCATTGTCTGGTGGTCACTGAGTGTTACTCACTGTTAc-tt 2089
||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||
Sbjct 1949 AGGTCCGGTCGCTTCAACGTCATTGTCTGGT---CACTGAGTGTTACACACTGTTGCCTT 2005
Query 2090 tcttttttcttttggcttttgagagt-ttttttttATTAATCTATAAAATATAAATCCCC 2148
|| ||||||||||| ||||| |||| |||||||| ||||||||||||| || ||||
Sbjct 2006 TCATTTTTCTTTTGCCTTTTCAGAGACTTTTTTTT-TTAATCTATAAAA-AT----CCCC 2059
Query 2149 AGTGGTGAATTATTTAACAAACAGTTTACAGTCTCGTTATAACATTTTCT 2198
||||||| ||||||||||||||||| ||||||||||| || | |||||
Sbjct 2060 AGTGGTG--TTATTTAACAAACAGTT--CAGTCTCGTTAAAAAAATTTCT 2105
Score = 721 bits (390), Expect = 0.0
Identities = 541/607 (89%), Gaps = 37/607 (6%)
Strand=Plus/Plus
Query 20 ATCAGTGATTTTTGGGTTTGAAATTTCTCTAGATCGATTTTGGATTTAGATCTCTTTGTT 79
|||| |||||| |||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 1 ATCACTGATTTCTGGGTTTGAAGTTTCTCTAGATCGATTTTAGATTTAGATCCCTTTGTT 60
Query 80 TCTACTGCTTTTCATCGTTGGATCTGCGTTTTGCAAAGGGAGATACAGAAAGGAATAGCT 139
|||||||| || | || | | || || | || || ||||||||||
Sbjct 61 TCTACTGC--TT--T--TT--A--T-CG--TT-C------AG----AG--AGGAATAGCT 94
Query 140 TTGAA-TTGACAAGG----TTT-CTCTCTAATCCAACCGAATCTCAAGCTTCCATGGCTC 193
||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 95 CAGAATTTGACAAGGTTTTTTTGCTCTCTAATCC-ACCGAATCTCAAGCTTCCATGGCTC 153
Query 194 TCAATCTCCGTCAGAAACAGACTGAATGTGTAATCCGGATGTTGAATCTGAACCAACCTT 253
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 154 TCAATCTCCGTCAGAAACATACTGAATGTATAATCCGGATGCTGAATCTGAACCAACCTT 213
Query 254 TGAATCCAAGTGGAACTGCGAACGAAGAAGTTTACAAGATCTTGATTTACGATAGGTTTT 313
||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || |
Sbjct 214 TGAATCCAAGTGGAACTGCAAACGAAGAAGTTTACAAGATCTTGATCTACGACAGATTCT 273
Query 314 GTCAGAACATTCTATCTCCATTGACCCATGTCAAGGATCTGCGTAAGCATGGAGTTACAC 373
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 274 GTCAGAACATTCTATCTCCATTGATCCATGTCAAGGATCTGCGTAAACATGGAGTTACAC 333
Query 374 TCTT-CTTTCTCATAGACAAAGATCGACA-ACCTGTTCATGATGTTCCCGCTGTCTACTT 431
| || |||||||||||||||||||||| | ||| ||||| |||||||||||||| |||||
Sbjct 334 T-TTACTTTCTCATAGACAAAGATCGA-AGACCCGTTCACGATGTTCCCGCTGTGTACTT 391
Query 432 TGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGATGCTTCTAGATCTCTCTA 491
||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 392 TGTTCAACCCACTGAATCTAACATCCAGAGGATCATAGCTGATGCTTCTAGATCTCTCTA 451
Query 492 CGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGTAAGTTTCTTGAAGAGCTAGC 551
||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 452 CGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGCAAGCATCTTGAGGAGCTAGC 511
Query 552 TTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGCATGATCAGTATCT 611
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 512 TTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGCATGATCAGTATTT 571
Query 612 GGAGTTT 618
|||||||
Sbjct 572 GGAGTTT 578
> Ahg944805 jgi|Araly1|944805|scaffold_701034.1
Length=1864
Score = 1249 bits (676), Expect = 0.0
Identities = 1477/1853 (80%), Gaps = 97/1853 (5%)
Strand=Plus/Plus
Query 183 TTCCATGGCTCTCAATCTCCGTC-AGAAACAGACT-GAATGTGTAATCCGGATGTTGAAT 240
||||||||||||||||||||| | | ||||||| | |||||| ||||||||||| ||||
Sbjct 19 TTCCATGGCTCTCAATCTCCG-CAACAAACAGA-TGGAATGTATAATCCGGATGCTGAAC 76
Query 241 CTGAACCAACCTTTGAATCCAAGTGGAACTGCGAACGAAGAAGT-TTACAAGATCTTGAT 299
||||| ||||| |||||||| | || || | | ||| | ||||||| ||||||
Sbjct 77 CTGAATCAACCATTGAATCC-A----AA---CG-A-G--GAA-TGTTACAAGGCCTTGAT 123
Query 300 TTACGATAGGTTT-TGTCAGAACATTCTATCTCCAT-TGACCCATGTCAAGGATCTGCGT 357
||||| | ||| ||| |||| ||| | |||| | ||| || || |||||||| |||
Sbjct 124 CTACGA-CGATTTCTGTGAGAAGATTATCGCTCC-TCTGATGCAAGTGAAGGATCTTCGT 181
Query 358 AAGCATGGAGTTACAC-TCTTCTT-TCTCAT-AGACAAAGATCGACAACCTGTTCATGAT 414
|| || |||||||||| || ||| || ||| | ||||| | || || |||||| ||||
Sbjct 182 AAACAAGGAGTTACACTTC-CCTTGTC-CATCA-ACAAAAAGAGAGAAGCTGTTCGTGAT 238
Query 415 GTTCCCGCTGTCTACTTTGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGAT 474
| | | |||||||||||| ||||||| |||||||||||| ||||||| ||||| || |||
Sbjct 239 GCTGCAGCTGTCTACTTTCTTCAACCCACTGAATCCAACATCCAGAGAATCATTGCAGAT 298
Query 475 GCTTCTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCG-ATCCCTCGTAA 533
|||||||||||||| ||| || ||| ||||||||||||||||| ||| ||||||||
Sbjct 299 GCTTCTAGATCTCTTTACCATTCCTATCATCTGAATTTCTCGT-ATCGTATCCCTCGCCC 357
Query 534 GTTTCTTGAAGA-GCTAGCTTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCG- 591
| | || ||| | || ||||||| |||||| || || ||||| |||| || || |
Sbjct 358 GCTCCTAGAA-ACTCTCGCTTCTGCGACTCTGAATTCCGGTTCCACTGAG--AGACTTGC 414
Query 592 AA-AGTGCATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCGCTGGC 650
|| ||||||||||||||||| |||||||| ||||||||||||||| |||| || ||||
Sbjct 415 AACGGTGCATGATCAGTATCTCGAGTTTGTTACTTTGGAAGATAACATGTTTTCTTTGGC 474
Query 651 TCAGCAATCTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGATTAATGA 710
|||| |||||| |||| |||| ||||||| ||||||||||| || | |||||| | ||
Sbjct 475 TCAGGAATCTATCTATCTTCAGTTGAATGATCCATCAGCAGGAGATAGAGAGATCGAGGA 534
Query 711 GATTATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCC 770
||||||||||| |||||||| ||| |||| ||||| |||| ||||||||||||||| ||
Sbjct 535 GATTATCGAAAAGGTCGCTAATGGGCTGTTCTGTGTATTGGCAACGCTTGGTGTGGTGCC 594
Query 771 TGTTATCCGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAA 830
||| |||||||| ||| |||||||||| || |||||||| || |||| ||||||||||||
Sbjct 595 TGTAATCCGATGTCCTCGTGGTGGACCAGCGGAGATGGTTGCATCTTCGTTGGATCAGAA 654
Query 831 ACTGAGGGATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGT---GGCGGTTTCAT 887
|||||||||||||||| |||| |||| |||||||||||| |||||| |||||||||||
Sbjct 655 ACTGAGGGATCATCTTCTGTCTAAGATCAATCTGTTTACCGAAGGTGGAGGCGGTTTCAT 714
Query 888 GAGCTCGTTTCAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTG 946
|| ||||||||||| || | ||||| || ||| ||||| |||||||| ||||||||||
Sbjct 715 TAGTTCGTTTCAGCGGCCTTTGTTGTGTAT-TTTCGATAGAAACTTTGAACTCTCGGTTG 773
Query 947 GGATTCAGCATGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGT-TAAAGCTC 1005
||||||||||||||||||||||| ||||||| ||||| |||||| | |||| ||||||||
Sbjct 774 GGATTCAGCATGATTTCAGATACAGGCCTCTTGTTCATGATGTTTT-GGGTCTAAAGCTC 832
Query 1006 AACCAATT-GAAAGTGCAGGGAGAGAAAG--GACCACCGAAATCGTTTGAGCTGGACAGT 1062
||| | || |||| ||| || | |||| || | |||| | |||| | ||||||
Sbjct 833 AAC-AGTTTGAAATTGCCTGGCCAAAAAGATGATAA--GAAAACATTTG---TAGACAGT 886
Query 1063 TCGGACCCATTCTGGTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATC 1122
|| ||||| |||||||||||||| || || | |||||||| || |||||||| || |||
Sbjct 887 TCAGACCCGTTCTGGTCAGCAAATGGTTCTTTAGAGTTTCCTGAAGTCGCTGTAGAAATC 946
Query 1123 GAAACACAGTTGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGT 1182
||||| |||||||| |||||||| | |||||| ||||||||||||| || ||| ||||||
Sbjct 947 GAAACTCAGTTGAATAAGTACAAAAAAGACGTGGAAGAGGTTAACAGGAGAACTGGAGGT 1006
Query 1183 GGGAGCGGC-G--CTGAGTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCAT 1239
|||| ||| | | |||||||||||| | ||||||||||| |||| ||| | | |||
Sbjct 1007 GGGAACGGGAGTGCAGAGTTTGATGGGGCTGATCTGATTGGGAACA-CCA-A--G--CAT 1060
Query 1240 CTCATGAACACTGTGAAATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAA 1299
|| ||||| ||||||| || || |||||||| || ||| ||||||| |||||||||||
Sbjct 1061 CTGATGAATGCTGTGAACTCACTTCCGGAGTTGACAGAGAGAAAGAAGGTGATTGACAAG 1120
Query 1300 CACACCAATATCGCAACAGCGCT-CTTAGGACAGATCAAGGAGAGATCTATTGACGCTTT 1358
|||||||| || || || ||||| || |||| ||||||||||| ||||| | || || |
Sbjct 1121 CACACCAACATTGCGACTGCGCTGCT-AGGAGAGATCAAGGAGCGATCTCTGGATGCATA 1179
Query 1359 CACTAAGAAAGA-AAGCGACATGATGATGAGGGGCGGAATCGACAGAA-CTGAACTTATG 1416
|||||||||||| || || |||||| |||| ||| | || ||||| | | || ||| |
Sbjct 1180 CACTAAGAAAGAGAAT-GAGATGATGGTGAGAGGCAGCATAGACAGGAGC-GAGCTTCTA 1237
Query 1417 GCTGCTCTGAAAGGCAAAGGG-AC-AAAGATGGACAAGCTCCGGTTTGCAATCATGTACC 1474
||| | ||||||| || ||| || ||| ||||||||| | || ||||| ||||||||||
Sbjct 1238 TCTGTTTTGAAAGGGAA-GGGTACCAAA-ATGGACAAGTTACGATTTGCCATCATGTACC 1295
Query 1475 TGATCTCCACAGAAACCATAAACCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATG 1534
| |||||| |||||||| ||||| | ||||||||||| ||||| || |||||| ||
Sbjct 1296 TAATCTCCTTGGAAACCATCAACCAGGCTGAAGTTGAAGCCGTGGAAGCGGCATTGCGTG 1355
Query 1535 AAGCTGAGGCTGATACAAGTGCGTTTCAGTATGTAAAGAAA-ATCAAATCGTTAAACGCA 1593
|||||||||| |||||||| |||||||||||||| || ||| ||||| ||| | || |
Sbjct 1356 AAGCTGAGGCCGATACAAGAGCGTTTCAGTATGTGAA-AAAGATCAAGTCGCTGAATGTG 1414
Query 1594 TCTTTTGCAGCTACATCAGCGAATTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAG 1653
||||| ||||| | ||||| || || || | | |||||||||| |||||||| |||
Sbjct 1415 TCTTTGGCAGC--C-TCAGC-AA----GC-AG-A-A-GCAACATTGTTGACTGGGCTGAG 1462
Query 1654 AAGCTTTACGGACAGTCTATAAGCGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGT 1713
|||||||| || |||||||||||||| || |||||||| ||||||||||| ||||| |||
Sbjct 1463 AAGCTTTATGGTCAGTCTATAAGCGCGGTCACTGCAGGGGTCAAGAATCTCTTATCAAGT 1522
Query 1714 GATCAACAATTGGCAGTGACTCGAACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCG 1773
||||| ||| |||| ||| | || ||||| ||||| ||||| || ||||||||||||||
Sbjct 1523 GATCAGCAACTGGCGGTGGCGCGGACAGTTGAAGCCTTAACTGAGGGAAAACCAAACCCA 1582
Query 1774 GAGATCGATTCTTACCGCTTCCTGGACCCAAGAGCTCCAAAGTC-G--TCTAGCTCCGGT 1830
|| | |||||| |||| | | ||||| || |||||| ||||||| | ||||| | |||
Sbjct 1583 GAAACCGATTCATACCTCATGCTGGATCCGAGAGCTTCAAAGTCAGGATCTAG-T--GGT 1639
Query 1831 GGTAGCCATGTAAAAGGACCGTTCAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAAC 1890
||| |||| || || || |||| |||||| ||||| |||||||| |||| |||||||
Sbjct 1640 AATAGTTATGTGAAGGGGCCTTTCAAAGAAGCCATAGTTTTCATGATTGGTGCAGGTAAC 1699
Query 1891 TATGTTGAGTATGGAAGTTTGCAGGAGTTGACTCAGAGACA-GTTAACCGTTAAAAACGT 1949
|| | || ||| | |||||||||||| | | ||| |||| | | ||||| ||| |
Sbjct 1700 TACATCGAATATAGCAGTTTGCAGGAGCTCTCGCAGCGACAAGAGATG-GTTAAGAACAT 1758
Query 1950 TATTTATGGAGCCACTGAGATTCTTAAC-GGAGGTGAG-TTGGTGGAGCAGCT 2000
||| ||||||||||| ||||| |||| | ||| |||| ||| || |||||||
Sbjct 1759 TATATATGGAGCCACAGAGATCCTTA-CTGGAACTGAGCTTGTTG-AGCAGCT 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85207878065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5