BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G17990.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480699 jgi|Araly1|480699|fgenesh2_kg.3__3400__AT2G17990.1 1888 0.0
Ahg489837 jgi|Araly1|489837|fgenesh2_kg.6__2971__AT2G17990.1 1099 0.0
> Ahg480699 jgi|Araly1|480699|fgenesh2_kg.3__3400__AT2G17990.1
Length=1308
Score = 1888 bits (1022), Expect = 0.0
Identities = 1250/1352 (92%), Gaps = 48/1352 (4%)
Strand=Plus/Plus
Query 77 TAATTTGTCTTCGTCTCTACCTTCCATCTCTCTCACCCACTCTCCTCGGAAACCACAGCG 136
|||||||||| ||||||||||||||||||||||||||| |||||||||| || || |
Sbjct 1 TAATTTGTCTCCGTCTCTACCTTCCATCTCTCTCACCCGCTCTCCTCGG-AA--AC--C- 54
Query 137 ACGGACGGACGGACGGACGATAAAACTTTTGCCTCTAA-TTTGCTCCT-ACAAATCTGGA 194
|| | | | ||||||||||||| ||||||||||||| ||| ||||| | |||||||||
Sbjct 55 AC--A--G-C-GACGGACGATAAAGCTTTTGCCTCTAATTTTACTCCTGA-AAATCTGGA 107
Query 195 ATCAGCCGGAGCGAATCTCGAAGCTTATGATCTCGACTTGCTGAAGAGGCTGGGAATGGC 254
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 108 ATCAGCCGGAGCGAATCTCGAAGCTTATGATCTCTACTTGCTGAAGGGGCTGGGGATGGC 167
Query 255 TGGTAAAGAGGAGACTGATGTATCTGCACAAGGGTCTTTAACCAGGGAGGCCACTGAGAT 314
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 168 TGGTAAAGAGGAGACTAATGTATCTGCAAAAGGGTCTTTAACCAGGGAAGCCACTGAGAT 227
Query 315 ATGGAGGAGTGAGTTGGAATCTCGCCGGTTTCAGGTAGATAGTTTAGAAGCTGAACTTGT 374
||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 228 ATGGAAGAGTGAGTTGGAATCTCGTCGGTTGCAGATAGATAGTTTAGAAGCTGAACTTGT 287
Query 375 GGATGTCAAGGCTTACCTTGAGTTTGGCTCAGAAGAAGATGCCAGAAAGGAGTTAGGAGT 434
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 288 GGATGTCAAGGCTTACCTTGAGTTTGGTTCAGAAGAAGATGCCAGAAAGGAATTAGGGGT 347
Query 435 TCTTTCGGGTAGGGTCAGATCGACTGCAACTATGTTGCGTTATTTGAGATCAAAAGCTAG 494
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 348 TCTTTCCGGTAGGGTCAGATCGACTGCAACTATGTTGCGGTATTTGAGATCAAAAGCTAG 407
Query 495 AGTCTTGGCCATTCCTGATGATCTAGCAAATGTGTCATGCGGTGTGGAACAGATTGAAGA 554
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 408 AATCTTGGCCATTCCTGATGATCTACCAAATGTGTCATGTGGTGTGGAACAGATT---GA 464
Query 555 ACTGAAAGGATTGAACCTTGTTGAGAAAGATGGTGGTTCATCTTCTTCT-GACGGGGCTA 613
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 465 ACTGAAAGGATTGAACTTTCTTGAGAAAGATGGTGGTTCATCTTCTTCTGGA-GGGGCTA 523
Query 614 GGAACACTAATCCTGAAACTAGAAGGTACAGTGGTTCCTTGGGTGTAGAGGATGGAGCCT 673
| ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 524 GCAACACTAGTCCTGAAACTAGAAGGTACCGTGGTTCCTTGGGTATAGAGGATGGAGCCT 583
Query 674 ATACTAATGAGATGCTCCAGTCCATAGAGATGGTTACTGATGTGCTGGACTCTCTTGTGA 733
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATACTAATGAGATGCTCCAATCCATAGAGATGGTTACTGATGTGCTGGACTCTCTTGTGA 643
Query 734 GGAGGGTTACAGTAGCAGAATCTGAGTCTGCTGTTCAAAAGGAGAGGGCACTTTTGGGAG 793
|||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 644 GGAGGGTTACAGCAGCAGAATCTGAGACGGCTGTTCAAAAAGAGAGGGCACTTTTGGGAG 703
Query 794 AGGAAGAAATCAGTAGGAAGACTATCCAAATCGAAAATTTGTCCGTGAAGTTAGAAGAGA 853
|||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||
Sbjct 704 AGGAAGAAATCAGTAGGAAGACAATCCAGATCGAAAATTTGTCCTTGAAATTAGAAGAGA 763
Query 854 TGGAACGATTTGCTTATGGGACTAATAGTGTTCTAAACGAAATGCGGGAAAGGATTGAGG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGGAACGATTTGCTTATGGGACTAATAGTGTTCTAAACGAAATGCGGGAAAGGATTGAGG 823
Query 914 AATTAGTTGAAGAGACGATGAGGCAGAGGGAAAAAGCTGTGGAAAACGAAGAGGAGTTGT 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 824 AATTAGTTGAAGAGACGATGAGGCAGAGGGAAAAAGCTGTGGAAAACGAAGAGGAGCTGT 883
Query 974 GTCGTGTGAAGAGAGAGTTCGAGTCGCTTAAAAGCTACGTCAGTACTTTTACCAATGTTC 1033
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 884 GTCGTGTGAAGAGAGAGTTCGAGTCGCTTAAAAGCTATGTCAGTACTTTTACCAATGTTA 943
Query 1034 GAGAAACACTTCTTTCGTCCGAGAGACAATTCAAAACCATTGAGGAGCTCTTTGAACGGT 1093
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 944 GAGAAACACTTCTTTCGTCCGAGAGACAATTCAAAACCATCGAGGAGCTCTTTGAACGGC 1003
Query 1094 TGGTCACTAAGACGACACAATTAGAAGGGGAGAAGGCACAAAAGGAGGTTGAAGTACAGA 1153
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1004 TGGTCACTAAGACAACACAATTAGAAGGCGAGAAGGCACAAAAGGAGGTTGAAGTTCAGA 1063
Query 1154 AACTGATGGAGGAGAATGTGAAATTGACAGCACTTCTCGACAAGAAAGAGGCTCAGCTTC 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AACTGATGGAGGAGAATGTGAAATTGACAGCACTTCTCGACAAGAAAGAGGCTCAGCTTC 1123
Query 1214 TAGCTTTGAATGAACAATGCAAAGTTATGGCTTTGAGTGCATCAAACATATGAAATTTGC 1273
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1124 TAGCTTTGAATGAACAATGCAAAGTTATGGCTTTGAGTGCATCAAACATATGAACTT-GC 1182
Query 1274 TTTATCTTTGCATTGTTGTTG-GCTCATCTCTTAtttttttCTTGAGACAATGCTTTCGC 1332
| |||||||||||| || ||| | || ||| ||| | | || |
Sbjct 1183 TATATCTTTGCATT-TTCTTGAGA-CA------ATTCTTT-C--G---CA--GA------ 1220
Query 1333 AGAAGTAGATGAATGCAATCTTCTTCCTTCATTGTTCTTTGCTTCAAATGTGACATTGTA 1392
||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1221 AGA--TAGATGA-TGCAATCTTCTTCCTTCATTGTTTTTTGCTTCAAATGTGACATTGTA 1277
Query 1393 ATTTTTTATCTGTAGATTATTATGGTTTATGC 1424
| |||| |||||||||||||||||||| ||||
Sbjct 1278 ACTTTT-ATCTGTAGATTATTATGGTTCATGC 1308
> Ahg489837 jgi|Araly1|489837|fgenesh2_kg.6__2971__AT2G17990.1
Length=1299
Score = 1099 bits (595), Expect = 0.0
Identities = 713/766 (93%), Gaps = 23/766 (3%)
Strand=Plus/Plus
Query 628 GAA-ACTAGAAGGTA-CAGTGGTTCCTTGGGTGTAGAGGATGGAGCCTATACTAATGAGA 685
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GAACACTAGAAGGTACCA-TGGTTCCTTGGGTGTAGAGGATGGAGCCTATACTAATGAGA 572
Query 686 TGCTCCAGTCCATAGAGATGGTTACTGATGTGCTGGACTCTCTTGTGAGGAGGGTTACAG 745
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TGCTCCAATCCATAGAAATGGTTACTGATGTGCTGGACTCTCTTGTGAGGAGGGTTACAG 632
Query 746 TAGCAGAATCTGAGTCTGCTGTTCAAAAGGAGAGGGCACTTTTGGGAGAGGAAGAAATCA 805
||||||||||||| | ||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 633 CAGCAGAATCTGAGACGGCTGTTCAAAAAGAGAAGGCACTTTTGGGCGAGGAAGAAATCA 692
Query 806 GTAGGAAGACTA-TCCAAATCGAAAATTTGTCCGT-GAAGTTAGAAGAGATGGAACGATT 863
|||||||||| | |||||||||| ||||||||| | |||||||||||| |||||||||||
Sbjct 693 GTAGGAAGAC-AGTCCAAATCGAGAATTTGTCC-TCGAAGTTAGAAGAAATGGAACGATT 750
Query 864 TGCTTATGGGACTAATAGTGTTCTAAACGAAATGCGGGAAAGGATTGAGGAATTAGTTGA 923
|||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 751 TGCTCATGGGACTAATAGTGTTCTAAATGAAATGCGGGAAAGGATTGAGGAACTAGTTGA 810
Query 924 AGAGACGATGAGGCAGAGGGAAAAAGCTGTGGAAAACGAAGAGGAGTTGTGTCGTGTGAA 983
|||||||||||| || |||||||||||| |||||||||||||||| |||||||||||||
Sbjct 811 AGAGACGATGAGACAAAGGGAAAAAGCTAAGGAAAACGAAGAGGAGCTGTGTCGTGTGAA 870
Query 984 GAGAGAGTTCGAGTCGCTTAAAAGCTACGTCAGTACTTTTACCAATGTTC-GAGAAACAC 1042
||||||||||||||||||||||||||| || |||||||||||||||| || |||||||||
Sbjct 871 GAGAGAGTTCGAGTCGCTTAAAAGCTATGTTAGTACTTTTACCAATG-TCAGAGAAACAC 929
Query 1043 TTCTTTCGTCCGAGAGACAATTCAAAACCATTGAGGAGCTCTTTGAACGGTTGGTCACTA 1102
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 930 TTCTTTCATCCGAGAGACAATTCAAAACCATTGAGGAGCTCTTTGAAAGGTTGGTCACTA 989
Query 1103 AGACGACACAATTAGAAGGGGAGAAGGCACAAAAGGAGGTTGAAGTACAGAAACTGATGG 1162
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 990 AGACGACACAATTAGAAGGTGAGAAGGCACAAAAGGAGGTTGAAGTTCAGAAACTGATGG 1049
Query 1163 AGGAGAATGTGAAATTGACAGCACTTCTCGACAAGAAAGAGGCTCAGCTTCTAGCTTTGA 1222
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AGGAGAATGTGAAATTGACGGCACTTCTCGACAAGAAAGAGGCTCAGCTTCTAGCTTTGA 1109
Query 1223 ATGAACAATGCAAAGTTATGGCTTTGAGTGCATCAAACATATGAAATTTGCTTTATCTTT 1282
|||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1110 ATGAACAATGCAAAGTCATGGCTTTGAGTGCATCAAACATATGAA-TTTGCT--ATCTTT 1166
Query 1283 GCATTGTTGTTGGCTCATCTCTTAtt----t-ttt-t---CTTGAGACAA-TGCTTTCGC 1332
|||||||||||| ||||||||||||| | ||| | |||||||||| |||||||||
Sbjct 1167 GCATTGTTGTTGACTCATCTCTTATTGCCATCTTTCTATTCTTGAGACAAATGCTTTCGC 1226
Query 1333 AGAAGTAGATGAATGCAATCTTCTTCCTTCATTGTTCTTTGCTTCA 1378
||||| |||||| |||||| ||||||||||||||||||||| ||||
Sbjct 1227 AGAAGAAGATGA-TGCAATATTCTTCCTTCATTGTTCTTTGTTTCA 1271
Score = 486 bits (263), Expect = 2e-136
Identities = 336/371 (91%), Gaps = 5/371 (1%)
Strand=Plus/Plus
Query 168 CCTCTAATTTGCTCCT-ACAAATCTGGAATCAGCCGGAGCGAATCTCGAAGCTTATGATC 226
||||||||| | |||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 115 CCTCTAATTCGTTCCTGA-AAATCTGGAATCGGCCGGAGCGAATCTCGAAGCTTATGATC 173
Query 227 TCGACTTGCTGAAGAGGCTGGGAATGGCTGGTAAAGAGGAGACTGATGTATCTGCACAAG 286
|||| || |||||| |||||| |||||||||| |||||| ||| ||||||||||| |||
Sbjct 174 TCGAGTTATTGAAGATGCTGGGGATGGCTGGTAGAGAGGATACTAATGTATCTGCAAAAG 233
Query 287 GGTCTTTAACCAGGGAGGCCACTGAGATATGGAGGAGTGAGTTGGAATCTCGCCGGTTTC 346
|||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||| |
Sbjct 234 GGTCTTTAACCAGGGAAGCCACTGAGATATGGAAGAGTGAATTGGAATCTCGTCGGTTGC 293
Query 347 AGGTAGATAGTTTAGAAGCTGAACTTGTGGATGTCAAGGCTTACCTTGAGTTTGGCTCAG 406
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 294 AGATAGATAGTTTAGAAGCTGAACTTGTTGATGTCAATGCTTACCTTGAGTTTGGTTCAG 353
Query 407 AAGAAGATGCCAGAAAGGAGTTAGGAGTTCTTTCGGGTAGGGTCAGATCGACTGCAACTA 466
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 354 AAGAAGATGCCAGAAAGGAATTAGGGGTTCTTTCGGGTAGGGTCAGATCGACTGCAACAA 413
Query 467 TGTTGCGTTATTTGAGATCAAAAGCTAGAGTCTTGGCCATTCCTGATGATCTAGCAAATG 526
||||||| |||||||||||||||||| || |||||||||||||||| ||||| ||||
Sbjct 414 TGTTGCGCTATTTGAGATCAAAAGCTGGAAACTTGGCCATTCCTGAT---CTAGCGAATG 470
Query 527 TGTCATGCGGT 537
|||||| ||||
Sbjct 471 TGTCATCCGGT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5