BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18000.2
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906633 jgi|Araly1|906633|Al_scaffold_0003_3761 941 0.0
Ahg942773 jgi|Araly1|942773|scaffold_603317.1 237 1e-61
> Ahg906633 jgi|Araly1|906633|Al_scaffold_0003_3761
Length=627
Score = 941 bits (509), Expect = 0.0
Identities = 565/593 (95%), Gaps = 0/593 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCGGATATCGAGATTTTGTCTGAAGCTGATGCGTCTATGCGGAAGCTACGCATT 60
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGAGTCTGATATCGAGATTTTTTCTGAAGCTGATGCGTCTATGCAGAAGCTACGCATT 60
Query 61 TTCGGAATTGATGATCGCGAAGATGAGAATGGGAGAAGAAGAATCAAAGATGTTGAAGTT 120
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 61 TTCGGAATTGATGATCGCGAAGATGAGAATGGGAGAAGAAGGATTAAAGATGTCGAAGTT 120
Query 121 TATGTTCCGATTGTGTGTGGATCGATTGCTTTTTATCTTGGAAAGAAAGCCACAGAATAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGTTCCGATTGTGTGTGGATCGATTGCTTTTTATCTTGGAAAGAAAGCCACAGAATAT 180
Query 181 CGAACACATAAGTGGACTGTTTATGTACGTGGAGCTACGAATGAGGATCTTGGTGTGGTT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGAACACATAAGTGGACTGTCTATGTACGTGGAGCTACGAATGAGGATCTTGGTGTGGTT 240
Query 241 ATCAAGCGGGTTATCTTCCATTTGCATCCAAGTTTTAATAATCCAACTAGAGTGGTTGAT 300
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 241 ATCAAGCGGGTTATTTTCCATTTGCATCCAAGTTTTAAGAACCCAACTAGAGTTGTTGAT 300
Query 301 GCTCCTCCCTTTGCATTGTCTGAGTGTGGTTGGGGAGAATTCAAAATCGACATAACCGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TCTCCTCCCTTTGCATTGTCTGAGTGTGGTTGGGGAGAATTCAAAATCGACATAACTGTT 360
Query 361 TTCTTCCATACCGATGTCTGTGAAAAGAAGTTGGAGTTGTCTCACGTCTTAAAGCTGAAC 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCTCCATACCGATGTCTGTGAAAAGAAGTTGGAGTTGTCTCACGTCTTAAAGCTGAAC 420
Query 421 CCGGAGAATGCATATGGTCCTATTCCTAAGTCTATTAAGATACCCGTTGTCGCTGAGTCT 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCGGAGAATGAATATGGTCCTATTCCTAAGTCTATTAAGATACCCGTTGTCGCTGAGTCT 480
Query 481 TACAATGAAGTTGTCTTTCCAGACCCTTTTGAGAGTTTTGTCGCCCGTGTTCATAATCAC 540
||||||||| ||||||| || ||||||||||||||||| | ||||||||||| ||||||
Sbjct 481 TACAATGAAATTGTCTTCCCTGACCCTTTTGAGAGTTTCCTTGCCCGTGTTCAGAATCAC 540
Query 541 CCGGCTATACAGATCTCTAACATCCCAGATGGTTTGAACCTGCCTCCTCCAGG 593
|||||| |||| ||||||||| | ||||||||||| |||||||||||||||||
Sbjct 541 CCGGCTGTACACATCTCTAACCTTCCAGATGGTTTCAACCTGCCTCCTCCAGG 593
> Ahg942773 jgi|Araly1|942773|scaffold_603317.1
Length=220
Score = 237 bits (128), Expect = 1e-61
Identities = 161/177 (91%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCGGATATCGAGATTTTGTCTGAAGCTGATGCGTCTATGCGGAAGCTACGCAT- 59
|||||||| |||||||||||| || | || ||||||||||||| || |||| |||||||
Sbjct 21 ATGGAGTCTGATATCGAGATTCTGCCAGATGCTGATGCGTCTACGCAGAAGATACGCATG 80
Query 60 TTTCGGAATTGATGATCGCGAAGATGAGAATGGGAGAAGAAGAATCAAAGATGTTGAAGT 119
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 81 TTT-GGAATTGATGATCGCGAAGATAAGAATGGGAGAAGAAGGATCAAAGATGTTGAAGT 139
Query 120 TTATGTTCCGATTGTGTGTGGATCGATTGCTTTTTATCTTGGAAAGAAAGCCACAGA 176
||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 140 TTATGTTCCTATTGTGTATGGATCGATTGCTTTTTATCTTGGAAAGAAAGGTACAGA 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5