BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18010.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value Ahg931672 jgi|Araly1|931672|scaffold_304129.1 527 2e-149 > Ahg931672 jgi|Araly1|931672|scaffold_304129.1 Length=379 Score = 527 bits (285), Expect = 2e-149 Identities = 322/340 (95%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 1 ATGGCAATAAAGAGATCGAGCAAAGCGACGTCGTCTCAAGCAGCATCTATCAAGCAAATA 60 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 21 ATGGCAATAAAGAGATCGAGCAAAGCAACGTCGTCTCAAGCAGCATCTATTAAGCAAATG 80 Query 61 GTAAAGAGATGCTCGAGTCTAAGAAAGATGAAGAACGTAAATGGTTGTTACTATAACCAA 120 ||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 81 GTAAAAAGATGCTCGAGTCTAAGAAAGATGAAGAACGTGAATGGTTGCTATTATAACCAA 140 Query 121 GAAGATGATCTTCCTCAAGACGTGCCAAAAGGTCATTTTCCGGTTTACGTGGGACCGAAC 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 141 GAAGATGATCTTCCTCAAGACGTGCCAAAAGGTCATTTTCCCGTTTACGTGGGACCGAAC 200 Query 181 CGAAGTCGGTACATCGTTCCTATCTCATGGCTCCATCACTCCGAGTTCCAAACATTGCTC 240 |||||||||||||||||||| ||||| |||||| | ||||| ||||| ||||| |||||| Sbjct 201 CGAAGTCGGTACATCGTTCCCATCTCGTGGCTCGACCACTCTGAGTTTCAAACGTTGCTC 260 Query 241 CGACTAGCTGAGGAAGAATTTGGGTTTGACCATGATATGGGTCTAACCATTCCTTGTGAT 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 261 CGACTAGCTGAGGAAGAGTTTGGGTTTGACCATGATATGGGTCTAACCATTCCTTGTGAT 320 Query 301 GAAGTCTTCTTCAGGTCTCTTATCTCC-ATGTTTAGATAA 339 ||||||||||||||||||||||||||| | |||||||||| Sbjct 321 GAAGTCTTCTTCAGGTCTCTTATCTCCGA-GTTTAGATAA 359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12019010535 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5