BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G18010.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931672 jgi|Araly1|931672|scaffold_304129.1                        527    2e-149


> Ahg931672 jgi|Araly1|931672|scaffold_304129.1
Length=379

 Score =  527 bits (285),  Expect = 2e-149
 Identities = 322/340 (95%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAATAAAGAGATCGAGCAAAGCGACGTCGTCTCAAGCAGCATCTATCAAGCAAATA  60
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct  21   ATGGCAATAAAGAGATCGAGCAAAGCAACGTCGTCTCAAGCAGCATCTATTAAGCAAATG  80

Query  61   GTAAAGAGATGCTCGAGTCTAAGAAAGATGAAGAACGTAAATGGTTGTTACTATAACCAA  120
            ||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct  81   GTAAAAAGATGCTCGAGTCTAAGAAAGATGAAGAACGTGAATGGTTGCTATTATAACCAA  140

Query  121  GAAGATGATCTTCCTCAAGACGTGCCAAAAGGTCATTTTCCGGTTTACGTGGGACCGAAC  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  141  GAAGATGATCTTCCTCAAGACGTGCCAAAAGGTCATTTTCCCGTTTACGTGGGACCGAAC  200

Query  181  CGAAGTCGGTACATCGTTCCTATCTCATGGCTCCATCACTCCGAGTTCCAAACATTGCTC  240
            |||||||||||||||||||| ||||| |||||| | ||||| ||||| ||||| ||||||
Sbjct  201  CGAAGTCGGTACATCGTTCCCATCTCGTGGCTCGACCACTCTGAGTTTCAAACGTTGCTC  260

Query  241  CGACTAGCTGAGGAAGAATTTGGGTTTGACCATGATATGGGTCTAACCATTCCTTGTGAT  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  261  CGACTAGCTGAGGAAGAGTTTGGGTTTGACCATGATATGGGTCTAACCATTCCTTGTGAT  320

Query  301  GAAGTCTTCTTCAGGTCTCTTATCTCC-ATGTTTAGATAA  339
            ||||||||||||||||||||||||||| | ||||||||||
Sbjct  321  GAAGTCTTCTTCAGGTCTCTTATCTCCGA-GTTTAGATAA  359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5