BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18020.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906639 jgi|Araly1|906639|Al_scaffold_0003_3767 1303 0.0
Ahg491018 jgi|Araly1|491018|fgenesh2_kg.7__451__AT4G36130.1 1031 0.0
Ahg323679 jgi|Araly1|323679|fgenesh1_pm.C_scaffold_5001223 693 0.0
Ahg356646 jgi|Araly1|356646|fgenesh1_pg.C_scaffold_8000433 244 7e-64
Ahg952312 jgi|Araly1|952312|scaffold_58200001.1 220 1e-56
> Ahg906639 jgi|Araly1|906639|Al_scaffold_0003_3767
Length=777
Score = 1303 bits (705), Expect = 0.0
Identities = 753/777 (97%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 50 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 60
Query 110 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGGTTAC 169
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGCGAAATGGTTAC 120
Query 170 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGT 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGC 180
Query 230 GTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAA 289
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 181 GTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAGAAGGAGCTCTTCGTCGCCGCTGAA 240
Query 290 GGTATGTACACCGGTCAGTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTTGGAAAT 349
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GGTATGTACACCGGCCAGTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTCGGAAAT 300
Query 350 GTTCTCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCATCACGTC 409
||||| |||||||||||||| ||||||||||||||||| || ||||| ||||| || |||
Sbjct 301 GTTCTTCCTCTTAGATCTATCCCTGAAGGAGCTGTTGTGTGTAACGTTGAGCACCATGTC 360
Query 410 GGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAAC 469
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GGTGATCGTGGTGTTCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATTGCTCACAAC 420
Query 470 CCTGACAGCGACACTACTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCAAGT 529
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 CCTGACAACGACACTACTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCGAGT 480
Query 530 GGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGATGCTC 589
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGATGCAGAGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGATGCTC 540
Query 590 AAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCGT 649
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 AAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGAAACTCATGGCCTAAGGTTCGT 600
Query 650 GGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACATTGGT 709
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACATTGGT 660
Query 710 CACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGTCTTATTGCTGCA 769
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 CACGCCAGTACGGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGGCTTATTGCTGCA 720
Query 770 AGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTTCAGCTGCCAAGGCAGACTAG 826
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 AGGAGGACTGGACGTCTCAGAGGTCAAGCTGCTGCTTCAGCCGCCAAGGCAGACTAG 777
> Ahg491018 jgi|Araly1|491018|fgenesh2_kg.7__451__AT4G36130.1
Length=854
Score = 1031 bits (558), Expect = 0.0
Identities = 712/786 (91%), Gaps = 12/786 (2%)
Strand=Plus/Plus
Query 46 ATCCATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCA 105
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 28 ATCCATGGGTCGTGTTATCAGAGCTCAACGTAAGGGAGCTGGTTCCGTCTTCAAATCCCA 87
Query 106 CACTCACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGG 165
|||||||||||| ||||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 88 CACTCACCACCGTAAAGGTCCGGCCAAATTCAGAAGCCTCGATTTCGGCGAGAGAAATGG 147
Query 166 TTACCTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTT-G 224
||||||||| || ||||||||||||||||| |||||||| || ||||||||||| || |
Sbjct 148 TTACCTCAAAGGTGTCGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTCC-GTTAG 206
Query 225 CTCGTGTCA-CTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCC 283
||||||| | ||||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 207 CTCGTGT-AGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCGTTGCT 265
Query 284 GCCGAAGGTATGTACACCGGTCAG-TTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGT 342
|| ||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 266 GCTGAAGGTATGTACACCGGTCAGTTTCTT-TACTGTGGGAAGAAAGCTACTCTCGTCGT 324
Query 343 TGGAAATGTTCTCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCA 402
|||||||||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct 325 TGGAAATGTTCTTCCTCTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAACGTTGAGCA 384
Query 403 TCACGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGC 462
||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 385 TCATGTTGGTGATCGTGGAGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGC 444
Query 463 TCACAACCCTGACAGCGACACTA-CTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTG 521
|||||| ||||| | |||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 445 TCACAATCCTGATAACGACACCAGC-AGGATTAAGTTGCCATCGGGTTCGAAGAAGATTG 503
Query 522 TCCCAAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGC 581
| |||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||
Sbjct 504 TACCAAGTGGATGCAGGGCTATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGAAGC 563
Query 582 CGATGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACT-CATGGCCT 640
| ||||| ||||| || ||||| ||||||||||||||||||||||| |||| | ||||||
Sbjct 564 CAATGCTTAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCT 622
Query 641 AAGGTTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAG 700
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 623 AAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAA 682
Query 701 CACATTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGTCTT 760
|| ||||||||||| ||||||||| | ||||||||||| || ||||| ||||||||||||
Sbjct 683 CATATTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCCGGACAAAAGGTTGGTCTT 742
Query 761 ATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCT-TCAGCTGCCAAGGC 819
||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 743 ATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTCTT-GCTTCTAAGGC 801
Query 820 AGACTA 825
||||||
Sbjct 802 AGACTA 807
> Ahg323679 jgi|Araly1|323679|fgenesh1_pm.C_scaffold_5001223
Length=777
Score = 693 bits (375), Expect = 0.0
Identities = 652/785 (83%), Gaps = 21/785 (3%)
Strand=Plus/Plus
Query 50 ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACT 109
||||||||||| || || || || ||||||||||| |||||||| ||||| |||||||||
Sbjct 1 ATGGGTCGTGTGATTAGGGCACAGCGTAAGGGTGCTGGTTCCGTTTTCAAGTCCCACACT 60
Query 110 CACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGGTTAC 169
||||||||||| ||||| ||||||||||| |||||||||| ||||||| |||||||||||
Sbjct 61 CACCACCGCAAGGGTCCAGCTAAGTTCCGGAGCCTCGATTACGGCGAGCGAAATGGTTAC 120
Query 170 CTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGT 229
||||| || | ||||| || ||||||||||| || || |||||||||||||| |||||
Sbjct 121 CTCAAAGGATTGGTGACCGAAATCATCCACGACCCAGGCCGTGGTGCTCCTCTCGCTCGC 180
Query 230 GTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAA 289
||| | ||||||||||||||||| | || ||| || |||||||| ||||| |||||||||
Sbjct 181 GTCGCGTTCCGTCATCCTTTCCGCTACATGAAGCAGAAGGAGCTGTTCGTAGCCGCCGAA 240
Query 290 GGTATGTACACCGGTCAGTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTTGGAAAT 349
|||||||||||||| || | | | ||||| |||||||| |||| ||| | || || ||
Sbjct 241 GGTATGTACACCGGACAATACCTCTACTGTGGTAAGAAGGCTAATCTTATGGTCGGTAAC 300
Query 350 GTTC-TCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCAT-CACG 407
|||| |||| ||| |||| || ||||| ||||||||||||||||| || |||| | || |
Sbjct 301 GTTCTTCCC-CTTGGATCAATCCCTGAGGGAGCTGTTGTCTGCAATGTTGAGC-TCCATG 358
Query 408 TCGGTGATCGTGGTGTC-CTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCAC 466
||||||| ||||| | | |||||||| |||||||||||||| ||||| || || ||||||
Sbjct 359 TCGGTGACCGTGGCG-CTCTCGCTAGGGCTTCTGGTGATTATGCCATCGTAATTGCTCAC 417
Query 467 AACCCTGACAGCGACACTACTAGGATTAAG-TTGCCATCGGGTTCGAAGAAGATTGTCCC 525
|| ||||||||| |||| |||||| ||||| || || || || |||||||||||| | ||
Sbjct 418 AATCCTGACAGCAACACCACTAGGGTTAAGCTT-CCTTCTGGATCGAAGAAGATTTTGCC 476
Query 526 AAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGA- 584
||||| ||||| || |||||||| |||||||| || || |||||||| |||||||| |
Sbjct 477 AAGTGCTTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAGAAGCC-AC 535
Query 585 TGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGG 644
| |||||||| ||||| || |||||||||| | ||||||||||||| |||||| |
Sbjct 536 TTCTCAAGGCTGGAAATGCATACCACAAGTTCAAAGTGAAGAGGAACTGTTGGCCTGTTG 595
Query 645 TTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA 704
| |||||||| || ||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 596 TGCGTGGTGTTGCGATGAACCCAGTGGAACATCCCCACGGAGGAGGTAACCATCAGCACA 655
Query 705 TTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGA-CAGAAGGTTGGTCTTA-T 762
|||||||||||||||| |||||||||||| | || |||| | |||||||| | | |
Sbjct 656 TTGGTCACGCCAGTACGGTTAGGCGTGATAAATCTGCTGGGGCT-AAGGTTGGCCA-AGT 713
Query 763 TGCTGCAAGGAGGACTGGTCGTC-TCAGAGGT-CAAGCTGCTGCTTCAGCTGCCAAGGCA 820
|||||||||||| |||||||||| | |||||| || || || || ||| |||||||||
Sbjct 714 TGCTGCAAGGAGAACTGGTCGTCGT-AGAGGTACA-GCCGCA--TT-AGCAGCCAAGGCA 768
Query 821 GACTA 825
|||||
Sbjct 769 GACTA 773
> Ahg356646 jgi|Araly1|356646|fgenesh1_pg.C_scaffold_8000433
Length=336
Score = 244 bits (132), Expect = 7e-64
Identities = 157/169 (93%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 586 GCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGT 645
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 147 GCTCAAGGGAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACTCATGGCCTAAGGT 206
Query 646 TCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACAT 705
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TCGTGGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACAT 266
Query 706 TGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGA-C-AGAAGG 752
||||| || ||||| ||||||||||||||| ||||| || | ||||||
Sbjct 267 AGGTCAAGCTAGTACGGTTAGGCGTGATGCATCTCCTAGAACTAGAAGG 315
> Ahg952312 jgi|Araly1|952312|scaffold_58200001.1
Length=292
Score = 220 bits (119), Expect = 1e-56
Identities = 145/158 (92%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 585 TGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGG 644
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 55 TGCTCAAGGCAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACTCATGGCGTAAGG 114
Query 645 TTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA 704
||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct 115 TTCGTGGTGTGGCTATGAACCCAGTGGAGCATTTTCATGGAGGAGGTAACCATCAACACA 174
Query 705 TTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCT 742
| ||||| || ||||| |||||||| |||||| |||||
Sbjct 175 TAGGTCAAGCTAGTACGGTTAGGCGGGATGCATCTCCT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5