BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18030.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480706 jgi|Araly1|480706|fgenesh2_kg.3__3407__AT2G18030.1 1650 0.0
> Ahg480706 jgi|Araly1|480706|fgenesh2_kg.3__3407__AT2G18030.1
Length=1113
Score = 1650 bits (893), Expect = 0.0
Identities = 1063/1139 (93%), Gaps = 36/1139 (3%)
Strand=Plus/Plus
Query 44 GTTCATATGGAGTTTCGTTCCCTGGTTCGAAACAGCAGCTAGACGAAAACTGTGTAATGG 103
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 GTTCATATGGAGATTCGTTCCCTGGTTCGAAGCAGCAGCTAGACGAAAACTGTGTAATGG 60
Query 104 CTATATCACTGAAGAGGAACCGTTTCTTCATTCCTTATACGAATCTCGTCTTCTTCTTCT 163
|| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTATCACAGAAGAGGAACCGTATCTTCATTCCTTATACGAATCTCGTCTTCTTCTTCT 120
Query 164 TCTTGTGTGTCTCTCTGCTCGATAAAACTGTATCCATCAGGATTTCGAATCAGATCTCGG 223
|||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 121 TCTTGTGTATCTCTCTGCTCGATAAAGCTGTTTGCATCAGGATTTCGAATCAGATCTCGG 180
Query 224 ATACTGTCGTTGATTCTCCCGATCGTCCTTTGAAATCTGCGGTTTTCGCTCTTGGAAGCT 283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATACTATCGTTGATTCTCCCGATCGTCCTTTGAAATCTGCGGTTTTCGCTCTTGGAAGCT 240
Query 284 TCTGGAGATCGGAGGCGGCGTTTGGTTGTATCAATGGCGTCG-TACGAACCTCCGCCGGT 342
|||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct 241 TCTGGAGATCGGAGGCTGCGTTTGGTTGTATCAATGGCGTCGTTA-GAACAACCGCCGGT 299
Query 343 TACGCCGGTGGAACGAAGACGAATCCGGAGTATAGGAACTTAGGTGATCACGCCGAGTCC 402
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 TACGCCGGTGGAACGAAGACGAATCCGGAGTATAGAAACTTAGGTGATCACGCCGAGTCC 359
Query 403 GTACAGGTTGAATATGATCCAAGGATAATTGGTTATCGTCAGCTCTTAGATGTATTTTGG 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 GTACAGGTTGAATATGATCCAAGGATAATTGGTTATCGTCAGCTCTTAGATGTATTCTGG 419
Query 463 TCTAGTCATGATTCTAGACAAGTGTTTGGACAAGGTCCTGATGTGGGTAATCAATACAGA 522
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 420 TCTAGTCATGATTCTAGACAAGTATTTGGACAAGGTCCTGATGTGGGTAACCAATACAGA 479
Query 523 TCCTGTATTTTCACTAATTCTACAGAAGAATTGAGACTGGCTTCTACCAGCAAAGAAAGG 582
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 480 TCCTGTATTTTCACTAATTCTACAGAAGAGTTGAGACTGGCTTCTACTAGCAAGGAAAGG 539
Query 583 GAGCAACTT-AATACAAGAAGCAGTATCGTGACCACTCAAATTCAACAGCTAGGAACGTT 641
||||||||| ||| ||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 540 GAGCAACTTAAAT-CAAGAAGCAGTATTGTCACTACTCAAATTCAACAGCTAGGAACGTT 598
Query 642 TTATCGCGCAGAGCCTGATCACCAGAAGTTCGAGCTGAAACAACATCCATTTCTTATTCA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTATCGCGCAGAGCCTGATCACCAGAAGTTCGAGCTGAAACAACATCCATTTCTTATTCA 658
Query 702 GCTAATTGGAAACATGGTAGAAGAAGAGCTTGAGAGATCAGCTCTAGCCACAAAACTAAA 761
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 659 GCTAATTGGAAACATGGCAGAAGAAGAGCTCGAGAGATCAGCTCTAGCCACAAAACTAAA 718
Query 762 CGGTTACGCAGCCGAGCTCTGCCCGCCTAGAATCCAGAAACATATCGACTCTAGAGTTAA 821
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 CGGTTATGCAGCCGAGCTCTGCCCGTCTAGAATCCAGAAACATATCGACTCTAGAGTTAA 778
Query 822 TGAGATCATTAGAAAAGGTTGGCCCGTCTTGAGAGACATCTAATATATAAGCCTTGTGAG 881
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 779 TGAGATCATTAGAAAAGGTTGGCCTGTCTTGAAAGACATCTAATATATAAGCCGTGTGAG 838
Query 882 ATCTTCGCGTTCTTGGATTTGATTGCTTAGTCTCAGATGTAAGTTTTGGTTCATTCTTTT 941
|||||| || ||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 839 ATCTTCACGCTCTTGGATTTGATTGAT-AGTCTCAGATGTAAGTTTTGGTCCATTCTTTT 897
Query 942 GGCCAGGAATTTGGTCACAACAATGTTTATGTCTTACTCTTGC---C---CC--TTGAGT 993
||||||||||| |||| |||||||||||||||||||||||||| | || ||||||
Sbjct 898 GGCCAGGAATT-GGTCGCAACAATGTTTATGTCTTACTCTTGCAGTCTTGCCCCTTGAGT 956
Query 994 GGTGATTGTTCAGCGTTTTGTCTTGTTTCTTTTAAGATCTCTCAAATAGTATATGCTTTT 1053
|||||||| |||| |||||||||||||||| | | | |||||
Sbjct 957 GGTGATTGGTCAGTGTTTTGTCTTGTTTCT---A---T----------G------CTTTT 994
Query 1054 TGTTTTCTTGTAAGAAGATTCAGTTAGACTTTCATTGTATCATTATGGTATTGATTACCA 1113
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 995 TGTTTTCTTGTAAGCAGATTCATTTAGACTTTCATTGTATCATTATGGTAGTGATTACCA 1054
Query 1114 ATTCATTGatattatatatatatatatatatatatatatatatatatatatatatatat 1172
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ATTCATTGATATTATATATATATATATATATATATATATATATATATATATATATATAT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5