BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18040.1
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480707 jgi|Araly1|480707|fgenesh2_kg.3__3408__AT2G18040.1 1319 0.0
> Ahg480707 jgi|Araly1|480707|fgenesh2_kg.3__3408__AT2G18040.1
Length=872
Score = 1319 bits (714), Expect = 0.0
Identities = 827/879 (94%), Gaps = 17/879 (2%)
Strand=Plus/Plus
Query 4 CGTCGATAATCATTAGGGTAAAGCAAAAATAGTGAAGCAGAGCCGCAAAAACACTTTTCC 63
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CGTCAATAATAATTAGGGTAAAGCAAAAATAGTGAAGCAGAGCCGCAAAAACA-TTTTCT 59
Query 64 CAAAATCAACGAAGATAGATTCAGATCGGAAGCGAAAGAACGATTCGGTCTCCTCCACAG 123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 CAAAATCAACGAAGATAGATTCAGATCGGAAACGAAAGAACGATTCGGTCTCCTCCACAG 119
Query 124 ATCGAACATCGAAGGAGAAGAAAGACCATCATCACAACAAGCATCGAAAGAAGAGCAAGA 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 ATCGAACATCGAAGGAGAAGAAAGACGATCATCACAACAAGCATCGAAAGAAGAGCAAGA 179
Query 184 TGGCGTCGAGAGACCAAGTTAAGGCATCGCACATTTTGATTAAGCATCAAGGTTCTCGGA 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 TGGCGTCGAGAGACCAAGTTAAGGCATCGCACATTTTGATTAAGCATCAAGGATCTCGGA 239
Query 244 GGAAAGCGTCGTGGAAGGATCCAGAAGGGAAGATTATTCT-GACTACCACTAGAGAAGCC 302
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 240 GGAAAGCGTCGTGGAAGGATCCAGAAGGGAAGATTAT-CTTGACTACCACTAGAGAAGCC 298
Query 303 GCCGTTGAGCAGCTTAAATCGATCCGTGAAGATATTGTCTCCGGCAAGGCGAATTTCGAA 362
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 299 GCCGTTGAGCAGCTTAAGTCGATCCGTGAAGATATTGTTTCCGGCAAGGCGAACTTCGAA 358
Query 363 GAAGTGGCGACTCGTGTTTCTGACTGTAGCTCTGCTAAACGCGGCGGTGATCTTGGTTCC 422
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 359 GAAGTGGCGACTCGTGTTTCTGACTGTAGTTCTGCTAAACGCGGCGGCGATCTTGGTCCC 418
Query 423 TTTGGTAGAGGTCAAATGCAGAAACCATTTGAGGAAGCAACTTACGCGCTCAAGGTTGGA 482
|||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 419 TTTGGTCGAGGTCAAATGCAGAAACCATTTGAGGAAGCGACTTACGCACTCAAGGTGGGA 478
Query 483 GATATAAGCGACATTGTCGATACAGACAGTGGAGTCCACATCATTAAGAGAACAGCTTGA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATATAAGCGACATTGTCGATACAGACAGTGGAGTCCACATCATTAAGAGAACAGCTTGA 538
Query 543 CCTTATCTGATCTGATAGAAAATGTATTGAAGGTGCCTGCTTCGTTTCCCTTCTCTTCTT 602
||| ||| ||||| ||| || ||||| ||||||||| |||| |||||||||||||||||
Sbjct 539 CCTGATCCGATCTAATA-AA--TGTATCGAAGGTGCCAGCTTTGTTTCCCTTCTCTTCTT 595
Query 603 GACCagaagaacatagaagaagaagaataagaagaaTTTAATTCAAGGTTATTGTTATTG 662
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 596 GACCAGAAGAACATAGAAGAAGAAGAATAAGAAGAACTTAATTCAAGGTTATTGTTATTG 655
Query 663 TGGTTTTGATTCTGAATCTGTCTACGAATTTGATACAA-CT-C--AAACATATGATAAAA 718
|||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||
Sbjct 656 TGGTTTTGATTCTGAAACTGTCTACGAATTTGATACAAACAACCCAAACATATGATAAAA 715
Query 719 TCAGACAAGCTATCTCATTTCTTCTTAAAGGCTTCATAAGCAC-TCCC-TGTCGTAGACA 776
|||||| ||||||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct 716 CCAGACACTCTATCTCATTTCTTCTTAAAG-CTTCATAAGCACATTCCATGTCGTAGACA 774
Query 777 GTGACTTGTATAATCACATTTCAGTATCTTTGTCATGGTCTTACTGCAACATTCTGGCAT 836
|||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 775 GTGATTTGTATAATCATATTTCAGTATCTTTGTCATA-TGTTACTGCAACATTCTGGCAT 833
Query 837 CTTGT---GTGTTGTCATTTTGCTCTTAAACTCTTGATA 872
||| | |||||||||||||||||||||||| ||||||
Sbjct 834 CTTTTTTAGTGTTGTCATTTTGCTCTTAAACTTTTGATA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32404479450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5