BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18050.1
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480711 jgi|Araly1|480711|fgenesh2_kg.3__3412__AT2G18050.1 1029 0.0
> Ahg480711 jgi|Araly1|480711|fgenesh2_kg.3__3412__AT2G18050.1
Length=707
Score = 1029 bits (557), Expect = 0.0
Identities = 676/729 (93%), Gaps = 25/729 (3%)
Strand=Plus/Plus
Query 1 AGATAGAGACAAGACAAGCAAAGCAACACTTTCACTAATCCTCTAATGGCAGAAGACAAG 60
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1 AGATAGAGACAAGACAAACAAAGCAACACTTTCACTAATCCTCTTATGGCCGAAGAGAAG 60
Query 61 ATCTTAAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCTTGAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120
Query 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGG-TCCTGAAAGAGAAGAACGGATCAAG 179
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGGCTCTT-AAAGAGAAGAACGGATCAAG 179
Query 180 CCCTTATGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCCTTACGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239
Query 240 CCGTAAAACACTTTCTCTACAGCTTAAAAACTCTGTTGCTAAAGGTAAGCTCGTGAAGAT 299
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 CCGTAAAATACTTTCTCTACAGCTTAAAAACTCTGTCACTAAAGGTAAGCTCGTGAAGAT 299
Query 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGATAACGAGGC-AGCAGGACaaga 358
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGACAACGAGGCTA-CAGGACAAGA 358
Query 359 agaataagaagaatatgaagcaagaagataaagagatcacaaagaGGACTAGGTCTTCTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAATAAGAAGAATATGAAGCAAGAAGATAAAGAGATCACAAAGAGGACTAGGTCTTCTT 418
Query 419 CGACAAGG-CCTAAGAAGACTGTGTCTGTGAACAAACAAGAAAAGAAGAGGAAAGTGAAG 477
|||||||| || ||||||| | |||||||||| ||||||||||||| |||||||| ||||
Sbjct 419 CGACAAGGTCC-AAGAAGAGTATGTCTGTGAATAAACAAGAAAAGATGAGGAAAGCGAAG 477
Query 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGTTGGTAAGAAGAAGGCCATGAAAGCT 537
|||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGCTGGTAAGAAG--G-CCATGAAAGCT 534
Query 538 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGATGGAACTGTGTGTGAATATGAAGA 597
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 535 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGAAGAAACTGTGTGTGAATATGAAGA 594
Query 598 ATAAGGTTTTTTGTTGTCTCTGTAAATGGATGATGACTTTGTTTTGGTTTGGTGTGGTCT 657
|||||||||||| || | | ||| || | | | | | | |||||||||||||
Sbjct 595 ATAAGGTTTTTT-TT-T-TA-GTATCTGTA--A--A-T--G----G-TTTGGTGTGGTCT 638
Query 658 CTTTTGGGTGTAAGAGTAAAGAGTCTTCGGATGTATAACCAGTACTACCATGTAATATAC 717
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 639 CTTTTTGGTTTAAGAGTAAAGAGTCTTCGGATGTATAACTAGTACTACCATGTAATATAC 698
Query 718 TCTAAATAG 726
|| ||||||
Sbjct 699 TCGAAATAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28134712746
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5