BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18060.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906644 jgi|Araly1|906644|Al_scaffold_0003_3772 1640 0.0
Ahg491017 jgi|Araly1|491017|fgenesh2_kg.7__450__AT4G36160.1 712 0.0
> Ahg906644 jgi|Araly1|906644|Al_scaffold_0003_3772
Length=1098
Score = 1640 bits (888), Expect = 0.0
Identities = 1032/1102 (94%), Gaps = 8/1102 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCAATGGAATCTTGTAGCGTTCCTCCAGGATTTAGGTTCCATCCGACGGACGAA 60
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1 ATGGAGTCAATGGAATCTTGTAGCGTTCCTCCTGGATTCAGGTTCCATCCGACTGACGAA 60
Query 61 GAGCTTGTCGGGTACTATCTAAGGAAGAAAATCGCATCGCAAAAGATTGATCTCGACGTC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 GAGCTTGTCGGTTACTATCTAAGGAAGAAAATCGCATCGCAAAAGATTGATCTTGATGTC 120
Query 121 ATCAGAGACATCGATCTCTACAGAATAGAACCATGGGATCTACAAGAACAATGTCGAATC 180
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 121 ATCAGAGACATTGATCTCTACAGAATCGAACCATGGGATCTACAAGAGCAATGTCGAATC 180
Query 181 GGTTATGAGGAACAAAATGAATGGTAtttttttAGTCACAAGGACAAGAAATATCCAACG 240
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGATATGAAGAGCAAAATGAATGGTATTTTTTTAGTCACAAGGACAAAAAATATCCAACG 240
Query 241 GGGACAAGAACTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGACAAGAACTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAA 300
Query 301 GCTGTTTACGACAAAACAAAACTAATTGGTATGAGGAAAACACTTGTGT-TCTACAAAGG 359
||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 301 GCTGTTTACGACAAAACAAAACTAATTGGAATGAGGAAAACACTTGTGTAT-TACAAAGG 359
Query 360 ACGTGCACCTAATGGC-AAGAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAG 418
|||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACGTGCTCCTAATGGCCAA-AAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAG 418
Query 419 ATGAGAATGCACCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCaaaaaaaGAG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 ATGAGAATGCACCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAAGAAAAGAG 478
Query 479 CTACAGGGCAAGCCAAGAACACGGAAACTTGGAGCTCAAGTTACTTTTACGATGAAGTTG 538
|||| |||||||||||||||||||||||||||| |||||||||||| || |||||||| |
Sbjct 479 CTACCGGGCAAGCCAAGAACACGGAAACTTGGACCTCAAGTTACTTCTATGATGAAGTCG 538
Query 539 CACCGAATGGAGTTAACTCGGTTATGGACCCCATTGATTACATATCTAAGCAGCAACATA 598
|| ||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 539 CATCGAATGGCGTTAACTCGTTTACAGACCCGATTGATTACATATCTAAGCAGCAACATA 598
Query 599 A-CATTTTTGGGAAAGGTTTGATGTGTAAGCAAGAACTAGAAGGAATGGTTGATGGTATA 657
| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 599 AAC-TTTTTGGAAAAGGTTTGATGTGTAAGCAAGAACTAGAAGGAATGGTTGACGGTCTA 657
Query 658 AACTATATACAATCGAATCAATTCATTCAGCTCCCACAACTCCAAAGCCCTTCTCTCCCG 717
|||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 658 AACTATATGCAATCAAATCAATTCATTCAGCTCCCGCAACTCCAAAGTCCTTCTCTCCCG 717
Query 718 CTGATGAAAAGACCTTCAAGCTCGATGTCCATAACATCAATGGATAACAATTACAACTAT 777
||||||||||| ||||| |||||||||||||||||||||||||| ||| ||| |||||
Sbjct 718 CTGATGAAAAGGCCTTCGAGCTCGATGTCCATAACATCAATGGACAACCATTGTAACTAC 777
Query 778 AAA-CTCCCATTAGCGGATGAAGAAAGCTTCGAGTCATTCATAAGAGGAGAGGATAGAAG 836
||| | ||||| || |||||||||||||||||||||||| ||||| ||||| ||| |||
Sbjct 778 AAAAC-CCCATCAGAGGATGAAGAAAGCTTCGAGTCATTAATAAGCCGAGAGAATAAAAG 836
Query 837 GAAGAAGAAAAAGCAAGTAATGATGACGGGAAATTGGAGAGAGTTAGACAAGTTTGTTGC 896
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 837 AAAGAAGAAAAAGCAAGTAATGATGACGGGAGATTGGAGAGAGTTAGATAAGTTTGTTGC 896
Query 897 TTCACAACTTATGAGCCAAGAAGACAATGGAACTTCAAGTTTCGCAGGTCATCATATAGT 956
|||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 897 TTCACAACTTATGAGCCAAGAAGATAATGGAACTTCAGGTTTCGCTGGTCATCATATAGC 956
Query 957 TAATGAAGATAAAAACAACAATGATGTGGAGATGGATTCGTCAATGTTTTTGAGCGAAAG 1016
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 957 TAATGAAGATAAAAACAACAATGATGTGGAGATTGATTCGTCGATGTTTTTGAGCGAGAG 1016
Query 1017 AGAAGAAGAAAACAGGTTCGTCAGTGAATTCTTGAGTACAAACTCGGATTATGATATTGG 1076
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1017 AGAAGAAGAGAACAGGTTCATCAGTGAGTTCTTGAGTACAAACTCGGATTATGATATTGG 1076
Query 1077 GATTTGCGTATTTGATAATTGA 1098
||||||||||||||||||||||
Sbjct 1077 GATTTGCGTATTTGATAATTGA 1098
> Ahg491017 jgi|Araly1|491017|fgenesh2_kg.7__450__AT4G36160.1
Length=1420
Score = 712 bits (385), Expect = 0.0
Identities = 786/971 (81%), Gaps = 62/971 (6%)
Strand=Plus/Plus
Query 14 AATCTTGTAGCGTTCCTCCAGGATTTAGGTTCCATCCGACGGACGAAGAGCTTGTCGGGT 73
|||| ||||| |||||||| ||||| || |||||||| || || |||||||| || || |
Sbjct 209 AATCATGTAGTGTTCCTCCGGGATTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTT 268
Query 74 ACTATCTAAGGAAGAAAA-TCGCATCGCAAAAGATTGATCTCGACGTCATCAGAGACATC 132
||||| ||||||| |||| | ||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 269 ACTATTTAAGGAA-AAAAGTTGCATCCCAAAAGATCGATCTTGATGTCATAAGAGATATT 327
Query 133 GATCTCTACAGAATAGAACCATGGGATCTACAAGAACA-ATGTCGAATCGGTTATGAGGA 191
|||||||||||||| |||||||||||| |||||| | | ||| |||||||| || |||||
Sbjct 328 GATCTCTACAGAATCGAACCATGGGATTTACAAG-AGAGATGCCGAATCGGATACGAGGA 386
Query 192 ACA-AAATGAATGGTAtttttttAGTCACAAGGACAAGAAATATCCAACGGGGACAAGAA 250
| | ||||||||||||||| || || ||||| || |||||||||||||| || |||||||
Sbjct 387 A-AGAAATGAATGGTATTTCTTCAGCCACAAAGATAAGAAATATCCAACAGGAACAAGAA 445
Query 251 CTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAAGCTGTTTACG 310
| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 446 CAAACAGAGCGACCATGGCTGGGTTTTGGAAAGCCACGGGTCGAGACAAGGCTGTTTACG 505
Query 311 ACAAAACAAAACTAATTGGTATGAGGAAAACACTTGTGTTCTACAAAGGACGTGCACCTA 370
|||| ||||||| ||||||||||| |||||||||||||||||||||||| | || ||||
Sbjct 506 ACAAGTCAAAACTGATTGGTATGAGAAAAACACTTGTGTTCTACAAAGGAAGAGCCCCTA 565
Query 371 ATGG-CAAGAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCA 429
|||| ||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 566 ATGGCCAA-AAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCA 624
Query 430 CCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCaa-aaaaaGAGC--T-ACAGG 485
|| || ||||||||||| ||||||||||||||||| ||||| |||||| | | || ||
Sbjct 625 CCTCCTCAGGAAGAAGGGTGGGTGGTTTGTAGAGCGTTCAAGAAAAAG-CCAATGACCGG 683
Query 486 GCAAGCCAAGAACACGGAAACTTGGAGCTCAAGTTACTTTTACGATGAAGTTGCACCGAA 545
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 684 GCAAGCCAAGAACACGGAAACTTGGAGCTCAAGTTACTTTTACGACGAA-TT--ACCGAG 740
Query 546 TGGAGTTAA-CTCGGTTATGGA-CC-C-CATTGATTACATATCTAAGCAGCAACATAACA 601
|||||| || ||||||| ||| || | || | |||| ||||||||||| |||| ||||
Sbjct 741 TGGAGT-AAGCTCGGTTGCGGAGCCTCTCA--G-TTACGTATCTAAGCAGAAACAAAACA 796
Query 602 TTTTTGGGA-AAGGTTTGATGTGT-AAGCAAGAACTAGAAGGAATG-GTTGAT-GGTATA 657
|||||| | ||| ||| |||| | |||||||||||||||||| | | | || ||| |
Sbjct 797 TTTTTGC-ACAAGATTTAATGT-TCAAGCAAGAACTAGAAGGA-TCAGAT-ATCGGTTTG 852
Query 658 AACTATATACAAT-CGAATCAATTCATTCAGCTCCCACAACTCCAAAGCCCTTCTCTCCC 716
|||| ||| || | ||| |||||||||||| || || || || |||||||||| |||||
Sbjct 853 AACTTTATCCACTGCGA-TCAATTCATTCAACTTCCGCAGCTTGAAAGCCCTTCACTCCC 911
Query 717 GCTGATGAAAAGACCT-TCAAGCTCGATGTCCATAACATCAATGGATAACAATTA--C-A 772
|| | ||| || || | || ||||| ||| || |||||| |||| || ||| | | |
Sbjct 912 TCTTACGAAGAGGCCAGTGAA-CTCGACGTCAATTACATCATTGGAGAAGAATCAAACTA 970
Query 773 ACTATAAACTCCCA-TTAGC-G--GATGAAGAAAGCTTCGA-GTCATTCATAAG-AG-GA 825
|||| ||| | | ||| | ||||| | |||||| | | | || ||||| || ||
Sbjct 971 ACTACAAAAGAC-AGTTAATAGAAGATGATGTGAGCTTCAATG-CGTTGATAAGTAGTGA 1028
Query 826 GAGGATAG--AAG--GAAGAAGAAAA-AGCAAGTAATGATGACGGGAAATTGGAGAG-AG 879
| | || || ||||||||||| | || || |||| ||||| | | |||||| |
Sbjct 1029 AAATAAAGGTAACAAGAAGAAGAAAACATCA-GTGATGACGACGG-AC-T-GGAGAGCAC 1084
Query 880 TTAGACAAGTTTGTTGCTTCACAACTTATGAGCCAAGAAGACAATGGAACTTCAAGTTTC 939
| || || ||||||||||| |||||||||||||||||||| |||| |||| |||||
Sbjct 1085 TC-GATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGA---TGGAGTTTCAGGTTTC 1140
Query 940 GCAGGTCATCA 950
| |||||||||
Sbjct 1141 GGAGGTCATCA 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5