BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18070.1
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906645 jgi|Araly1|906645|Al_scaffold_0003_3773 187 6e-47
> Ahg906645 jgi|Araly1|906645|Al_scaffold_0003_3773
Length=888
Score = 187 bits (101), Expect = 6e-47
Identities = 138/156 (88%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 1 ATGGAACCGATCGAGTACAATGTATGTGAGACTTCTAAATGTAACTCCCACGTCGACGAC 60
||||||||||||||||||||||| | |||| | ||||||||||||||||||| |||||||
Sbjct 1 ATGGAACCGATCGAGTACAATGTTTTTGAGTCCTCTAAATGTAACTCCCACGACGACGAC 60
Query 61 CATGGATGGAAGAAAGTCGTGTCCTCG-AAGAGCATTCGGAAGCGAAAACCAGCGGATCA 119
|||||||||||||||||||||||| || ||| ||| | ||||| ||||||||||||| |
Sbjct 61 CATGGATGGAAGAAAGTCGTGTCC-CGGAAGCGCAACCTGAAGCAAAAACCAGCGGATGA 119
Query 120 GGCGGCCAGTGGAAACCAACCTACCGGTGAGGACGT 155
| ||||| |||||||||||||||||| ||| ||||
Sbjct 120 AGAGGCCAATGGAAACCAACCTACCGGCGAGAACGT 155
Score = 93.5 bits (50), Expect = 1e-18
Identities = 60/64 (94%), Gaps = 3/64 (5%)
Strand=Plus/Plus
Query 346 GGAATGGTACTGCGTA-CAAGACCTAATGCTTTGGCTATTGTATTACCGACACTGAGGG- 403
||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGAATGGTACTACGTAGC-AGACCTAATGCTTTGGCTATTGTATTACCGACACTGAGGGG 476
Query 404 AGAA 407
||||
Sbjct 477 AGAA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17055548283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5