BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G18080.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480713 jgi|Araly1|480713|fgenesh2_kg.3__3414__AT2G18080.1 1923 0.0
Ahg491014 jgi|Araly1|491014|fgenesh2_kg.7__447__AT4G36190.1 1048 0.0
Ahg931688 jgi|Araly1|931688|scaffold_304145.1 263 3e-69
> Ahg480713 jgi|Araly1|480713|fgenesh2_kg.3__3414__AT2G18080.1
Length=1254
Score = 1923 bits (1041), Expect = 0.0
Identities = 1187/1258 (94%), Gaps = 8/1258 (1%)
Strand=Plus/Plus
Query 217 ATGGACTACTTTCGATCTCCAGATGGGCCTATGTTTATGATAATATGCGGTGAAGGTCCT 276
||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1 ATGGACTACTTTCGAGCTCCAGATGGGCCTTTGTTTATGATAATCTGCGGTGAAGGTCCT 60
Query 277 TGTAGTGGCATAGCTAATGATTATATAAATGTATTAGCAAAGAAGTTTCAAGCAGGTGTG 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTAGTGGCATAGCTAATGATTATATAAATGTATTAGCAAAGAAGTTTCAAGCAGGTGTG 120
Query 337 GTTTCACTAGAACATAGGTACTATGGAAAAAGCTCCCCCTTTAACTCATTAGCTACAGAA 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTTCACTAGAACATAGGTACTATGGAAAAAGCTCCCCCTTTAACTCATTAGCTACAGAG 180
Query 397 AATTTGAAATACCTTTCATCGAAACAAGCCCTTTACGATTTGGCATCTTTCCGACAATAT 456
||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct 181 AATCTGAAATACCTTTCATCAAAACAAGCCCTTTTCGATTTGGCCGCTTTCCGACAATAT 240
Query 457 TACCAGGAATCTCTGAATAAGAAGTTGAATATAAGTAGTGGTGGTAGTGACAATCCGTGG 516
|||||||||||| ||||| ||||||||||| |||| |||||||| ||| |||||||||
Sbjct 241 TACCAGGAATCTTTGAATGTTAAGTTGAATATGAGTAATGGTGGTAATGAAAATCCGTGG 300
Query 517 TTCTTCTTCGGGATTTCTTATTCTGGAGCTTTAAGTGCGTGGTTTCGGCTTAAGTTCCCG 576
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 301 TTCTTCTTCGGGATTTCTTATTCTGGAGCTTTAAGTGCCTGGTTTAGGCTTAAGTTCCCG 360
Query 577 CATTTGACGTGTGGAAGCCTTGCTAGTTCTGCAGTCGTTCGTGCAATCTATGAATTCTCT 636
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 361 CATTTGACGTGTGGAAGCCTTGCTAGTTCTGCAGTCGTTCGCGCGGTCTATGAATTCACT 420
Query 637 GAATTTGATCAGCAGATAGGTGAATCAGCTGGTCAAGAATGCAAACTTGCACTACAAGAG 696
||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 421 GAATTTGATCAGCAGATAGGTGAGTCAGCTGGTCAAGAATGCAAAGGTGCATTACAAGAG 480
Query 697 ACTAATAAACTTCTGGAATTAGGGCTTAAAGTAAAAAATAA-GGCAGTGAAATCTCTCTT 755
||||||||||| || |||||||||||||||| |||| | || |||||||||||| |||||
Sbjct 481 ACTAATAAACTCCTCGAATTAGGGCTTAAAG-AAAACAGAAAGGCAGTGAAATCCCTCTT 539
Query 756 CAATGCCACTGAGCTTGATGTTGATGCTGATTTTTTATACTTAACGGCAGATGCAGCGGT 815
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 CAATGCCACCGAGCTTGATGTTGATGCTGATTTCTTATACTTAACGGCAGATGCAGCGGT 599
Query 816 TATGGCGTTTCAATATGGAAATCCAGATAAACTATGTGTCCCGCTTGTTGAAGCAAAGAA 875
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATGGCGTTTCAGTATGGAAATCCAGATAAACTATGTGTCCCGCTTGTTGAAGCAAAGAA 659
Query 876 GAATGGTAGTGATTTAGTGGTAACATATTC-AACATATGTTAGAGAGTATTGCATGAGAA 934
|||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||
Sbjct 660 GAATGGTAGTGATTTAGTGGAAACATATTCTAA-ATACGTTAGAGAGTATTGCATGAGAT 718
Query 935 TTTGGGGATTACGTGTTAGAACATATAACCGAAAACATCTGAGAAACACAGTAGTTACCG 994
||||||| ||||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 719 TTTGGGGGCTACGTGTAAGAACATATAACCGAAAACATCTAAGAAACACTGTCGTTACCG 778
Query 995 CAGACAGTGCATATCGGTTATGGTGGTTTCAAGCTTGCACAGAACTAGGATATTTCCAGG 1054
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 CAGACAGCGCATATCGGTTATGGTGGTTTCAAGTTTGCACAGAACTAGGATATTTCCAGG 838
Query 1055 TGGCACCTAAATATGATAGTGTTCGATCTCATCAAATCAATACAACGTTTCATTTGGATT 1114
||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 839 TGGCACCTAAAAATGATAGTGTTCGATCTCAGCAAATCAATACAATGTTCCATTTGGATT 898
Query 1115 TATGCAAGAGCCTTTTTGG-GAAAGATGTTTACCCTAAAGTTGATGCAACAAACTTGTAC 1173
||||||||||||| ||||| ||| | |||||||||||||||||| |||||||||||||||
Sbjct 899 TATGCAAGAGCCTGTTTGGAGAAGG-TGTTTACCCTAAAGTTGACGCAACAAACTTGTAC 957
Query 1174 TATGGAGGCGATAGACTCGCCGCAACCAAAATCATTTTCACAAATGGGTCAGAAGATCCA 1233
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 TATGGAGGCGATAGACTCACCGCAACCAAAATCATTTTCACAAATGGTTCAGAAGATCCA 1017
Query 1234 TGGCGTCATGCTTCCAAACAGAACTC-TACTCATGAAATGCCTTCTTACATCATAAAATG 1292
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1018 TGGCGTCATGCTTCCAAACAGAACTCAT-CTCATGAAATGCCTTCTTACATCATAAAATG 1076
Query 1293 TCGTAACTGTGGCCATGGAAGTGATATAAGAGGATGCCCTCAATCTCCAATGGTCATTGA 1352
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCGTAACTGTGGCCATGGAACTGATATAAGAGGATGCCCTCAATCTCCAATGGTCATTGA 1136
Query 1353 AGGTAAATCAAATAATTGCAGCTTACCCGATTATGTAAACAAAGTAAGGCAACAGATGGT 1412
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1137 AGGTAAATCAAATAATTGCAGCTTACCAGATTATGTAAACAAAGTAAGGCAACAAATGGT 1196
Query 1413 AGAACACATTGACTTGTGGCTGTCTGAGTGTCGCCAATCTATTAGGAGTTCAATATAG 1470
|||||| |||||||||||| |||||||||||||| || | ||||||||||||||||||
Sbjct 1197 AGAACATATTGACTTGTGGTTGTCTGAGTGTCGCAAACCGATTAGGAGTTCAATATAG 1254
> Ahg491014 jgi|Araly1|491014|fgenesh2_kg.7__447__AT4G36190.1
Length=1560
Score = 1048 bits (567), Expect = 0.0
Identities = 1098/1351 (81%), Gaps = 49/1351 (4%)
Strand=Plus/Plus
Query 124 TACATGACGACCAATGAACTATGGTTTAATCAAACCCTAGATCA-TGAATCTCCTAATGA 182
||| |||||| |||| || ||||| ||||||||||||||||| | | |||||| |||
Sbjct 169 TACTTGACGAGGGATGAGCTCTGGTTCAATCAAACCCTAGATCACT-ACTCTCCTTCTGA 227
Query 183 TCACCGCAAATTCAGACAGCGATACTATGAATTTATGGACTACTTT-CGA-TCTCCAGAT 240
||| |||||||||||||||||||||||||||| | | ||| | ||| ||| | ||||||
Sbjct 228 TCATCGCAAATTCAGACAGCGATACTATGAATATCTTGACCA-TTTACGAGT-TCCAGAC 285
Query 241 GGGCCTATGTTTATGATAATATGCGGTGAAGGTCCTTGTAGTGGCATAGCTAATGATTAT 300
|| ||||| |||||||| || || || ||||| ||||| | ||| || | ||||| |||
Sbjct 286 GGACCTATCTTTATGATGATCTGTGGCGAAGGACCTTGCAATGGAATCCCCAATGACTAT 345
Query 301 ATAAATGTATTAGCAAAGAAGTTTCAAGCAGGTGTGGTTTCACTAGAACATAGGTACTAT 360
|||| ||| ||||||||||||||| | ||||| | |||||||| || ||| | |||||
Sbjct 346 ATAACTGTGTTAGCAAAGAAGTTTGATGCAGGCATTGTTTCACTCGAGCATCGTTACTAC 405
Query 361 GGAAAAAGCTCCCCCTTTAACTCATTAGCTACAGAAAATTTGAAATACCTTTCATCGAAA 420
||||| ||||| || ||||| |||||||| || || ||| | || || |||||||| |||
Sbjct 406 GGAAAGAGCTCACCGTTTAAGTCATTAGCCACTGAGAATCTCAAGTATCTTTCATCTAAA 465
Query 421 CAAGCCCTTTACGATTTGGCAT-CTTTCCGACAATATTACCAGG-AATCTCTGAATAAGA 478
|| || |||| |||||| || | ||||||| ||||||||||||| || || ||| |
Sbjct 466 CAGGCTCTTTTCGATTTAGC-TGCTTTCCGCCAATATTACCAGGCAAGATCA-AATGACT 523
Query 479 AGTTGAATAT-AAGT--AGT-G--GTGGTA--GT-GACAATCCGTGGTTCTTCTTCGG-G 528
|||||| | |||| | | | |||| | || || ||||||||||| ||||| || |
Sbjct 524 CTTTGAATGTTAAGTTTAATAGAAGTGGCAACGTTGAGAATCCGTGGTTTTTCTTTGGAG 583
Query 529 ATTTCTTATTCTGGAGCTTTAAGTGCGTGGTTTCGGCTTAAGTTCCCGCATTTGACGTGT 588
| |||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct 584 CGT-CTTATTCTGGAGCTTTAAGTGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGT 642
Query 589 GGAAGCCTTGCTAGTTCTGCAGTCGTTCGTGCAATCTATGAATTCTCTGAATTTGATCAG 648
|||||||| |||||||| ||||| |||||||| |||| |||||| |||||||||||||
Sbjct 643 GGAAGCCTCGCTAGTTCCGCAGTTGTTCGTGCTGTCTACGAATTCCCTGAATTTGATCAA 702
Query 649 CAGATAGGTGAATCAGCTGGTCAAGAATGCAAA-CTTGCACTACAAGAGACTAATAAACT 707
||||||||||| || ||||| | ||||| ||| || |||||||||||||||||||||||
Sbjct 703 CAGATAGGTGAGTCCGCTGGACCGGAATGTAAAGCT-GCACTACAAGAGACTAATAAACT 761
Query 708 TCT-GGAATTAGGGCTTAAAGTAAAAAATAAGGCAGTGAAATCTCTCTTCAATGCCACTG 766
|| |||| ||||||||||||| || || | ||| |||||| |||||||||||||||| |
Sbjct 762 -CTTGGAACTAGGGCTTAAAGTGAATAACAGGGCTGTGAAAGCTCTCTTCAATGCCACCG 820
Query 767 AGCTTGATGTTGATGCTGATTTTTTATACTTAACGGCAGATGCAGCGGTTATGGCGTTTC 826
||||||| || ||||||||||| || ||||| | |||||||||| ||||||||| | |
Sbjct 821 AGCTTGACGTCGATGCTGATTTCTTGTACTTGATAGCAGATGCAGAAGTTATGGCGATCC 880
Query 827 AATATGGAAATCCAGATAAACTATGTGTCCCGCTTGTTGAAGCA-AAGAAGAATGGTAGT 885
|||| ||||| || |||||||||||||| || || || ||||| || ||||||||| ||
Sbjct 881 AATACGGAAACCCGGATAAACTATGTGTACCACTCGTGGAAGCTCAA-AAGAATGGTGGT 939
Query 886 GATTTAGTGGTAA-CATATTC-AACATATGTTAGAGAGTATTGCATGAGAATTTG-GGGA 942
|||||||||| || ||||| | || |||||||||||||| ||| ||| || ||| |||
Sbjct 940 GATTTAGTGG-AAGCATATGCTAA-ATATGTTAGAGAGTTTTGTATGGGAGTTTTCGGGC 997
Query 943 TTA-CGTGTTAGAACATATAACCGAAAACATCTGAGAAACACAGTAGTTACCGCAGACAG 1001
| | | | | | |||||||| ||| ||||||||| | |||| | || ||| |||| ||
Sbjct 998 TAAGC-TCTAA-AACATATAGCCGGAAACATCTGCTAGACACTGCGGTCACCCCAGAGAG 1055
Query 1002 TGCATATCGG-TTATGGTGGTTTCAAGCTTGCACAGAACTAG-GATATTTCCAGGTGGCA 1059
|||| || || || |||||||| |||| |||||| ||| | | | |||||||| ||||||
Sbjct 1056 TGCAGATAGGCTT-TGGTGGTTCCAAGTTTGCACTGAAGTGGCG-TATTTCCAAGTGGCA 1113
Query 1060 CCTA-AATATGATAGTGTTCGATCTCATCAAATCAATACA-ACGTTTCATTTGGATTTAT 1117
||| || | ||||| | || |||||||||||||||||| | || |||||||||| |||
Sbjct 1114 CCTGCAA-ACGATAGCATCCGGTCTCATCAAATCAATACAGA-GTATCATTTGGATCTAT 1171
Query 1118 GCAAGAGCCTTTTTGGGAAAGATGTTTACCCTAAAGTTGATGCAACAAACTTGTACTATG 1177
||||||| || |||||||||| |||||||||| |||| |||||||||||| |||||||||
Sbjct 1172 GCAAGAGTCTGTTTGGGAAAGGTGTTTACCCTGAAGTCGATGCAACAAACCTGTACTATG 1231
Query 1178 GAGGCGATAGACTCGCCGCAACCAAAATCATTTTCACAAATGGGTCAGAAGATCCATGGC 1237
|| | |||||| | || || ||||| || || ||||||||||||||| | ||||||||||
Sbjct 1232 GAAGTGATAGAATTGCTGCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGC 1291
Query 1238 GTCATGCTTCCAAACAGAACTC-TACTCATGAAATGCCTTCTTACATCATAAAATGTCGT 1296
||||||| |||||||||| ||| | ||| |||| ||||||||||||| | | ||||
Sbjct 1292 GTCATGCATCCAAACAGACCTCAT-CTCCTGAACTGCCTTCTTACATTGTGACTTGTCAC 1350
Query 1297 AACTGTGGCCATGGAAGTGATATAAGAGGATGCCCTCAATCTCCAATGGTCATTGAAGGT 1356
||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct 1351 AACTGTGGCCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGAAGGT 1410
Query 1357 AAATCAAATAATTGCAGCTT-ACCCGATT-ATGTAAACAAAGTAAGGCAACAGATGGTAG 1414
| || || |||||||| || ||| ||| | || |||||||| |||||||| || ||||
Sbjct 1411 GATTCCAAGAATTGCAG-TTCACCAGATGCA-GTGAACAAAGTGAGGCAACATATAGTAG 1468
Query 1415 AACACATTGACTTGTGGCTGTCTGAGTGTCG 1445
||||||| ||||||||||| || ||||||||
Sbjct 1469 AACACATGGACTTGTGGCTCTCCGAGTGTCG 1499
> Ahg931688 jgi|Araly1|931688|scaffold_304145.1
Length=273
Score = 263 bits (142), Expect = 3e-69
Identities = 169/182 (93%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTTAGAGTTCGGCTTTATTCTGATCAACATTTTCACTGCGATTGTGTCAT-TTTC 59
|||||||| ||| |||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 21 ATGTCGTTGGAGCTCGGCTTTATTCTGATCACCACTTTCACTGCGATTGTGTCATGTTT- 79
Query 60 AACTTTGTCTCATGCCTTATTGCATCCTAGTAGCGTTTCTCATAATGTCTCCAGAAGCCG 119
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 80 GACTTTGTCTCATGCCTTATTGCATCCTAGTAGCGTGTCTCATAATGTCTCGAGAAGCAG 139
Query 120 CTATTACATGACGACCAATGAACTATGGTTTAATCAAACCCTAGATCATGAATCTCCTAA 179
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 140 CTATTACTTGACTACCAATGAACTATGGTTTAATCAAACCCTAGATCATGACTCTCCTAA 199
Query 180 TG 181
||
Sbjct 200 TG 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5