BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G18080.1 Length=1470 Score E Sequences producing significant alignments: (Bits) Value Ahg480713 jgi|Araly1|480713|fgenesh2_kg.3__3414__AT2G18080.1 1923 0.0 Ahg491014 jgi|Araly1|491014|fgenesh2_kg.7__447__AT4G36190.1 1048 0.0 Ahg931688 jgi|Araly1|931688|scaffold_304145.1 263 3e-69 > Ahg480713 jgi|Araly1|480713|fgenesh2_kg.3__3414__AT2G18080.1 Length=1254 Score = 1923 bits (1041), Expect = 0.0 Identities = 1187/1258 (94%), Gaps = 8/1258 (1%) Strand=Plus/Plus Query 217 ATGGACTACTTTCGATCTCCAGATGGGCCTATGTTTATGATAATATGCGGTGAAGGTCCT 276 ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1 ATGGACTACTTTCGAGCTCCAGATGGGCCTTTGTTTATGATAATCTGCGGTGAAGGTCCT 60 Query 277 TGTAGTGGCATAGCTAATGATTATATAAATGTATTAGCAAAGAAGTTTCAAGCAGGTGTG 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTAGTGGCATAGCTAATGATTATATAAATGTATTAGCAAAGAAGTTTCAAGCAGGTGTG 120 Query 337 GTTTCACTAGAACATAGGTACTATGGAAAAAGCTCCCCCTTTAACTCATTAGCTACAGAA 396 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTTCACTAGAACATAGGTACTATGGAAAAAGCTCCCCCTTTAACTCATTAGCTACAGAG 180 Query 397 AATTTGAAATACCTTTCATCGAAACAAGCCCTTTACGATTTGGCATCTTTCCGACAATAT 456 ||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| Sbjct 181 AATCTGAAATACCTTTCATCAAAACAAGCCCTTTTCGATTTGGCCGCTTTCCGACAATAT 240 Query 457 TACCAGGAATCTCTGAATAAGAAGTTGAATATAAGTAGTGGTGGTAGTGACAATCCGTGG 516 |||||||||||| ||||| ||||||||||| |||| |||||||| ||| ||||||||| Sbjct 241 TACCAGGAATCTTTGAATGTTAAGTTGAATATGAGTAATGGTGGTAATGAAAATCCGTGG 300 Query 517 TTCTTCTTCGGGATTTCTTATTCTGGAGCTTTAAGTGCGTGGTTTCGGCTTAAGTTCCCG 576 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 301 TTCTTCTTCGGGATTTCTTATTCTGGAGCTTTAAGTGCCTGGTTTAGGCTTAAGTTCCCG 360 Query 577 CATTTGACGTGTGGAAGCCTTGCTAGTTCTGCAGTCGTTCGTGCAATCTATGAATTCTCT 636 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct 361 CATTTGACGTGTGGAAGCCTTGCTAGTTCTGCAGTCGTTCGCGCGGTCTATGAATTCACT 420 Query 637 GAATTTGATCAGCAGATAGGTGAATCAGCTGGTCAAGAATGCAAACTTGCACTACAAGAG 696 ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| Sbjct 421 GAATTTGATCAGCAGATAGGTGAGTCAGCTGGTCAAGAATGCAAAGGTGCATTACAAGAG 480 Query 697 ACTAATAAACTTCTGGAATTAGGGCTTAAAGTAAAAAATAA-GGCAGTGAAATCTCTCTT 755 ||||||||||| || |||||||||||||||| |||| | || |||||||||||| ||||| Sbjct 481 ACTAATAAACTCCTCGAATTAGGGCTTAAAG-AAAACAGAAAGGCAGTGAAATCCCTCTT 539 Query 756 CAATGCCACTGAGCTTGATGTTGATGCTGATTTTTTATACTTAACGGCAGATGCAGCGGT 815 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 540 CAATGCCACCGAGCTTGATGTTGATGCTGATTTCTTATACTTAACGGCAGATGCAGCGGT 599 Query 816 TATGGCGTTTCAATATGGAAATCCAGATAAACTATGTGTCCCGCTTGTTGAAGCAAAGAA 875 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TATGGCGTTTCAGTATGGAAATCCAGATAAACTATGTGTCCCGCTTGTTGAAGCAAAGAA 659 Query 876 GAATGGTAGTGATTTAGTGGTAACATATTC-AACATATGTTAGAGAGTATTGCATGAGAA 934 |||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||| Sbjct 660 GAATGGTAGTGATTTAGTGGAAACATATTCTAA-ATACGTTAGAGAGTATTGCATGAGAT 718 Query 935 TTTGGGGATTACGTGTTAGAACATATAACCGAAAACATCTGAGAAACACAGTAGTTACCG 994 ||||||| ||||||| ||||||||||||||||||||||| |||||||| || ||||||| Sbjct 719 TTTGGGGGCTACGTGTAAGAACATATAACCGAAAACATCTAAGAAACACTGTCGTTACCG 778 Query 995 CAGACAGTGCATATCGGTTATGGTGGTTTCAAGCTTGCACAGAACTAGGATATTTCCAGG 1054 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 779 CAGACAGCGCATATCGGTTATGGTGGTTTCAAGTTTGCACAGAACTAGGATATTTCCAGG 838 Query 1055 TGGCACCTAAATATGATAGTGTTCGATCTCATCAAATCAATACAACGTTTCATTTGGATT 1114 ||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||| Sbjct 839 TGGCACCTAAAAATGATAGTGTTCGATCTCAGCAAATCAATACAATGTTCCATTTGGATT 898 Query 1115 TATGCAAGAGCCTTTTTGG-GAAAGATGTTTACCCTAAAGTTGATGCAACAAACTTGTAC 1173 ||||||||||||| ||||| ||| | |||||||||||||||||| ||||||||||||||| Sbjct 899 TATGCAAGAGCCTGTTTGGAGAAGG-TGTTTACCCTAAAGTTGACGCAACAAACTTGTAC 957 Query 1174 TATGGAGGCGATAGACTCGCCGCAACCAAAATCATTTTCACAAATGGGTCAGAAGATCCA 1233 |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 958 TATGGAGGCGATAGACTCACCGCAACCAAAATCATTTTCACAAATGGTTCAGAAGATCCA 1017 Query 1234 TGGCGTCATGCTTCCAAACAGAACTC-TACTCATGAAATGCCTTCTTACATCATAAAATG 1292 |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1018 TGGCGTCATGCTTCCAAACAGAACTCAT-CTCATGAAATGCCTTCTTACATCATAAAATG 1076 Query 1293 TCGTAACTGTGGCCATGGAAGTGATATAAGAGGATGCCCTCAATCTCCAATGGTCATTGA 1352 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TCGTAACTGTGGCCATGGAACTGATATAAGAGGATGCCCTCAATCTCCAATGGTCATTGA 1136 Query 1353 AGGTAAATCAAATAATTGCAGCTTACCCGATTATGTAAACAAAGTAAGGCAACAGATGGT 1412 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1137 AGGTAAATCAAATAATTGCAGCTTACCAGATTATGTAAACAAAGTAAGGCAACAAATGGT 1196 Query 1413 AGAACACATTGACTTGTGGCTGTCTGAGTGTCGCCAATCTATTAGGAGTTCAATATAG 1470 |||||| |||||||||||| |||||||||||||| || | |||||||||||||||||| Sbjct 1197 AGAACATATTGACTTGTGGTTGTCTGAGTGTCGCAAACCGATTAGGAGTTCAATATAG 1254 > Ahg491014 jgi|Araly1|491014|fgenesh2_kg.7__447__AT4G36190.1 Length=1560 Score = 1048 bits (567), Expect = 0.0 Identities = 1098/1351 (81%), Gaps = 49/1351 (4%) Strand=Plus/Plus Query 124 TACATGACGACCAATGAACTATGGTTTAATCAAACCCTAGATCA-TGAATCTCCTAATGA 182 ||| |||||| |||| || ||||| ||||||||||||||||| | | |||||| ||| Sbjct 169 TACTTGACGAGGGATGAGCTCTGGTTCAATCAAACCCTAGATCACT-ACTCTCCTTCTGA 227 Query 183 TCACCGCAAATTCAGACAGCGATACTATGAATTTATGGACTACTTT-CGA-TCTCCAGAT 240 ||| |||||||||||||||||||||||||||| | | ||| | ||| ||| | |||||| Sbjct 228 TCATCGCAAATTCAGACAGCGATACTATGAATATCTTGACCA-TTTACGAGT-TCCAGAC 285 Query 241 GGGCCTATGTTTATGATAATATGCGGTGAAGGTCCTTGTAGTGGCATAGCTAATGATTAT 300 || ||||| |||||||| || || || ||||| ||||| | ||| || | ||||| ||| Sbjct 286 GGACCTATCTTTATGATGATCTGTGGCGAAGGACCTTGCAATGGAATCCCCAATGACTAT 345 Query 301 ATAAATGTATTAGCAAAGAAGTTTCAAGCAGGTGTGGTTTCACTAGAACATAGGTACTAT 360 |||| ||| ||||||||||||||| | ||||| | |||||||| || ||| | ||||| Sbjct 346 ATAACTGTGTTAGCAAAGAAGTTTGATGCAGGCATTGTTTCACTCGAGCATCGTTACTAC 405 Query 361 GGAAAAAGCTCCCCCTTTAACTCATTAGCTACAGAAAATTTGAAATACCTTTCATCGAAA 420 ||||| ||||| || ||||| |||||||| || || ||| | || || |||||||| ||| Sbjct 406 GGAAAGAGCTCACCGTTTAAGTCATTAGCCACTGAGAATCTCAAGTATCTTTCATCTAAA 465 Query 421 CAAGCCCTTTACGATTTGGCAT-CTTTCCGACAATATTACCAGG-AATCTCTGAATAAGA 478 || || |||| |||||| || | ||||||| ||||||||||||| || || ||| | Sbjct 466 CAGGCTCTTTTCGATTTAGC-TGCTTTCCGCCAATATTACCAGGCAAGATCA-AATGACT 523 Query 479 AGTTGAATAT-AAGT--AGT-G--GTGGTA--GT-GACAATCCGTGGTTCTTCTTCGG-G 528 |||||| | |||| | | | |||| | || || ||||||||||| ||||| || | Sbjct 524 CTTTGAATGTTAAGTTTAATAGAAGTGGCAACGTTGAGAATCCGTGGTTTTTCTTTGGAG 583 Query 529 ATTTCTTATTCTGGAGCTTTAAGTGCGTGGTTTCGGCTTAAGTTCCCGCATTTGACGTGT 588 | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||| Sbjct 584 CGT-CTTATTCTGGAGCTTTAAGTGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGT 642 Query 589 GGAAGCCTTGCTAGTTCTGCAGTCGTTCGTGCAATCTATGAATTCTCTGAATTTGATCAG 648 |||||||| |||||||| ||||| |||||||| |||| |||||| ||||||||||||| Sbjct 643 GGAAGCCTCGCTAGTTCCGCAGTTGTTCGTGCTGTCTACGAATTCCCTGAATTTGATCAA 702 Query 649 CAGATAGGTGAATCAGCTGGTCAAGAATGCAAA-CTTGCACTACAAGAGACTAATAAACT 707 ||||||||||| || ||||| | ||||| ||| || ||||||||||||||||||||||| Sbjct 703 CAGATAGGTGAGTCCGCTGGACCGGAATGTAAAGCT-GCACTACAAGAGACTAATAAACT 761 Query 708 TCT-GGAATTAGGGCTTAAAGTAAAAAATAAGGCAGTGAAATCTCTCTTCAATGCCACTG 766 || |||| ||||||||||||| || || | ||| |||||| |||||||||||||||| | Sbjct 762 -CTTGGAACTAGGGCTTAAAGTGAATAACAGGGCTGTGAAAGCTCTCTTCAATGCCACCG 820 Query 767 AGCTTGATGTTGATGCTGATTTTTTATACTTAACGGCAGATGCAGCGGTTATGGCGTTTC 826 ||||||| || ||||||||||| || ||||| | |||||||||| ||||||||| | | Sbjct 821 AGCTTGACGTCGATGCTGATTTCTTGTACTTGATAGCAGATGCAGAAGTTATGGCGATCC 880 Query 827 AATATGGAAATCCAGATAAACTATGTGTCCCGCTTGTTGAAGCA-AAGAAGAATGGTAGT 885 |||| ||||| || |||||||||||||| || || || ||||| || ||||||||| || Sbjct 881 AATACGGAAACCCGGATAAACTATGTGTACCACTCGTGGAAGCTCAA-AAGAATGGTGGT 939 Query 886 GATTTAGTGGTAA-CATATTC-AACATATGTTAGAGAGTATTGCATGAGAATTTG-GGGA 942 |||||||||| || ||||| | || |||||||||||||| ||| ||| || ||| ||| Sbjct 940 GATTTAGTGG-AAGCATATGCTAA-ATATGTTAGAGAGTTTTGTATGGGAGTTTTCGGGC 997 Query 943 TTA-CGTGTTAGAACATATAACCGAAAACATCTGAGAAACACAGTAGTTACCGCAGACAG 1001 | | | | | | |||||||| ||| ||||||||| | |||| | || ||| |||| || Sbjct 998 TAAGC-TCTAA-AACATATAGCCGGAAACATCTGCTAGACACTGCGGTCACCCCAGAGAG 1055 Query 1002 TGCATATCGG-TTATGGTGGTTTCAAGCTTGCACAGAACTAG-GATATTTCCAGGTGGCA 1059 |||| || || || |||||||| |||| |||||| ||| | | | |||||||| |||||| Sbjct 1056 TGCAGATAGGCTT-TGGTGGTTCCAAGTTTGCACTGAAGTGGCG-TATTTCCAAGTGGCA 1113 Query 1060 CCTA-AATATGATAGTGTTCGATCTCATCAAATCAATACA-ACGTTTCATTTGGATTTAT 1117 ||| || | ||||| | || |||||||||||||||||| | || |||||||||| ||| Sbjct 1114 CCTGCAA-ACGATAGCATCCGGTCTCATCAAATCAATACAGA-GTATCATTTGGATCTAT 1171 Query 1118 GCAAGAGCCTTTTTGGGAAAGATGTTTACCCTAAAGTTGATGCAACAAACTTGTACTATG 1177 ||||||| || |||||||||| |||||||||| |||| |||||||||||| ||||||||| Sbjct 1172 GCAAGAGTCTGTTTGGGAAAGGTGTTTACCCTGAAGTCGATGCAACAAACCTGTACTATG 1231 Query 1178 GAGGCGATAGACTCGCCGCAACCAAAATCATTTTCACAAATGGGTCAGAAGATCCATGGC 1237 || | |||||| | || || ||||| || || ||||||||||||||| | |||||||||| Sbjct 1232 GAAGTGATAGAATTGCTGCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGC 1291 Query 1238 GTCATGCTTCCAAACAGAACTC-TACTCATGAAATGCCTTCTTACATCATAAAATGTCGT 1296 ||||||| |||||||||| ||| | ||| |||| ||||||||||||| | | |||| Sbjct 1292 GTCATGCATCCAAACAGACCTCAT-CTCCTGAACTGCCTTCTTACATTGTGACTTGTCAC 1350 Query 1297 AACTGTGGCCATGGAAGTGATATAAGAGGATGCCCTCAATCTCCAATGGTCATTGAAGGT 1356 ||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||||| Sbjct 1351 AACTGTGGCCATGGAAGTGATCTCCGTGGATGCCCTCAATCTCCCATGGTCATTGAAGGT 1410 Query 1357 AAATCAAATAATTGCAGCTT-ACCCGATT-ATGTAAACAAAGTAAGGCAACAGATGGTAG 1414 | || || |||||||| || ||| ||| | || |||||||| |||||||| || |||| Sbjct 1411 GATTCCAAGAATTGCAG-TTCACCAGATGCA-GTGAACAAAGTGAGGCAACATATAGTAG 1468 Query 1415 AACACATTGACTTGTGGCTGTCTGAGTGTCG 1445 ||||||| ||||||||||| || |||||||| Sbjct 1469 AACACATGGACTTGTGGCTCTCCGAGTGTCG 1499 > Ahg931688 jgi|Araly1|931688|scaffold_304145.1 Length=273 Score = 263 bits (142), Expect = 3e-69 Identities = 169/182 (93%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 1 ATGTCGTTAGAGTTCGGCTTTATTCTGATCAACATTTTCACTGCGATTGTGTCAT-TTTC 59 |||||||| ||| |||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 21 ATGTCGTTGGAGCTCGGCTTTATTCTGATCACCACTTTCACTGCGATTGTGTCATGTTT- 79 Query 60 AACTTTGTCTCATGCCTTATTGCATCCTAGTAGCGTTTCTCATAATGTCTCCAGAAGCCG 119 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | Sbjct 80 GACTTTGTCTCATGCCTTATTGCATCCTAGTAGCGTGTCTCATAATGTCTCGAGAAGCAG 139 Query 120 CTATTACATGACGACCAATGAACTATGGTTTAATCAAACCCTAGATCATGAATCTCCTAA 179 ||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 140 CTATTACTTGACTACCAATGAACTATGGTTTAATCAAACCCTAGATCATGACTCTCCTAA 199 Query 180 TG 181 || Sbjct 200 TG 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55002313780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5